RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 KIAA0586Q9BVV6 1533 aa24.04■■□□□ 1.44
BRCA1-218ENST00000489037 PRG4Q92954 1404 aaPredicted RBP24.02■■□□□ 1.44
BRCA1-218ENST00000489037 ERCC6L2Q5T890 1561 aa24.01■■□□□ 1.43
BRCA1-218ENST00000489037 RAPGEF2Q9Y4G8 1499 aa24■■□□□ 1.43
BRCA1-218ENST00000489037 IQGAP2Q13576 1575 aa23.9■■□□□ 1.42
BRCA1-218ENST00000489037 EEA1Q15075 1411 aa23.87■■□□□ 1.41
BRCA1-218ENST00000489037 CSRNP3Q8WYN3 585 aa23.87■■□□□ 1.41
BRCA1-218ENST00000489037 TRHP20396 242 aaPredicted RBP23.86■■□□□ 1.41
BRCA1-218ENST00000489037 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
BRCA1-218ENST00000489037 CARMIL2Q6F5E8 1435 aa23.85■■□□□ 1.41
BRCA1-218ENST00000489037 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
BRCA1-218ENST00000489037 CTTNBP2Q8WZ74 1663 aa23.81■■□□□ 1.4
BRCA1-218ENST00000489037 FAM9AQ8IZU1 332 aaPredicted RBP23.77■■□□□ 1.4
BRCA1-218ENST00000489037 NPM1P06748 294 aaKnown RBP eCLIP23.75■■□□□ 1.39
BRCA1-218ENST00000489037 TNIKQ9UKE5 1360 aa23.75■■□□□ 1.39
BRCA1-218ENST00000489037 PTPRGP23470 1445 aa23.75■■□□□ 1.39
BRCA1-218ENST00000489037 TTBK1Q5TCY1 1321 aaPredicted RBP23.74■■□□□ 1.39
BRCA1-218ENST00000489037 UGGT2Q9NYU1 1516 aa23.74■■□□□ 1.39
BRCA1-218ENST00000489037 DISP1Q96F81 1524 aa23.69■■□□□ 1.38
BRCA1-218ENST00000489037 GOLGA3Q08378 1498 aa23.67■■□□□ 1.38
BRCA1-218ENST00000489037 KIAA0556O60303 1618 aa23.65■■□□□ 1.38
BRCA1-218ENST00000489037 ADCY10Q96PN6 1610 aa23.64■■□□□ 1.38
BRCA1-218ENST00000489037 KIF21BO75037 1637 aa23.59■■□□□ 1.37
BRCA1-218ENST00000489037 UACAQ9BZF9 1416 aa23.57■■□□□ 1.36
BRCA1-218ENST00000489037 UHRF1BP1LA0JNW5 1464 aa23.53■■□□□ 1.36
BRCA1-218ENST00000489037 MAPKBP1O60336 1514 aa23.53■■□□□ 1.36
BRCA1-218ENST00000489037 ABCC2Q92887 1545 aa23.51■■□□□ 1.35
BRCA1-218ENST00000489037 UBTFP17480 764 aaKnown RBP23.49■■□□□ 1.35
BRCA1-218ENST00000489037 KIF13AQ9H1H9 1805 aa23.48■■□□□ 1.35
BRCA1-218ENST00000489037 RANGAP1P46060 587 aaPredicted RBP23.48■■□□□ 1.35
BRCA1-218ENST00000489037 P3H3Q8IVL6 736 aa23.48■■□□□ 1.35
BRCA1-218ENST00000489037 EHMT2Q96KQ7 1210 aa23.48■■□□□ 1.35
BRCA1-218ENST00000489037 FAM69CQ0P6D2 419 aa23.45■■□□□ 1.34
BRCA1-218ENST00000489037 ABCC10Q5T3U5 1492 aa23.44■■□□□ 1.34
BRCA1-218ENST00000489037 SAMD9Q5K651 1589 aa23.44■■□□□ 1.34
BRCA1-218ENST00000489037 PLB1Q6P1J6 1458 aa23.42■■□□□ 1.34
BRCA1-218ENST00000489037 KDM5BQ9UGL1 1544 aa23.4■■□□□ 1.34
BRCA1-218ENST00000489037 ABCA8O94911 1581 aa23.39■■□□□ 1.33
BRCA1-218ENST00000489037 DIP2BQ9P265 1576 aa23.39■■□□□ 1.33
BRCA1-218ENST00000489037 ZCCHC11Q5TAX3 1644 aaKnown RBP23.38■■□□□ 1.33
BRCA1-218ENST00000489037 ASXL2Q76L83 1435 aa23.38■■□□□ 1.33
BRCA1-218ENST00000489037 EFCAB5A4FU69 1503 aa23.35■■□□□ 1.33
BRCA1-218ENST00000489037 FHOD3Q2V2M9 1422 aa23.31■■□□□ 1.32
BRCA1-218ENST00000489037 TSPOAP1O95153 1857 aa23.3■■□□□ 1.32
BRCA1-218ENST00000489037 RAPGEF6Q8TEU7 1601 aa23.28■■□□□ 1.32
BRCA1-218ENST00000489037 GLI2P10070 1586 aa23.26■■□□□ 1.31
BRCA1-218ENST00000489037 WDR7Q9Y4E6 1490 aa23.24■■□□□ 1.31
BRCA1-218ENST00000489037 ARID3CA6NKF2 412 aa23.24■■□□□ 1.31
BRCA1-218ENST00000489037 EPRSP07814 1512 aaKnown RBP23.23■■□□□ 1.31
BRCA1-218ENST00000489037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.23■■□□□ 1.31
BRCA1-218ENST00000489037 HNRNPUL2Q1KMD3 747 aaKnown RBP23.23■■□□□ 1.31
BRCA1-218ENST00000489037 ATP10BO94823 1461 aa23.2■■□□□ 1.3
BRCA1-218ENST00000489037 KCNH8Q96L42 1107 aa23.2■■□□□ 1.3
BRCA1-218ENST00000489037 ARHGAP35Q9NRY4 1499 aa23.17■■□□□ 1.3
BRCA1-218ENST00000489037 FMN1Q68DA7 1419 aa23.16■■□□□ 1.3
BRCA1-218ENST00000489037 NUP153P49790 1475 aaKnown RBP23.14■■□□□ 1.29
BRCA1-218ENST00000489037 MAP3K4Q9Y6R4 1608 aa23.14■■□□□ 1.29
BRCA1-218ENST00000489037 ATP1B4Q9UN42 357 aaPredicted RBP23.12■■□□□ 1.29
BRCA1-218ENST00000489037 TEX14Q8IWB6 1497 aa23.11■■□□□ 1.29
BRCA1-218ENST00000489037 CFAP43Q8NDM7 1665 aa23.1■■□□□ 1.29
BRCA1-218ENST00000489037 KDM6BO15054 1643 aa23.1■■□□□ 1.29
BRCA1-218ENST00000489037 PLEKHD1A6NEE1 506 aa23.09■■□□□ 1.29
BRCA1-218ENST00000489037 PPRC1Q5VV67 1664 aaKnown RBP23.09■■□□□ 1.29
BRCA1-218ENST00000489037 CD109Q6YHK3 1445 aa23.08■■□□□ 1.28
BRCA1-218ENST00000489037 HECW1Q76N89 1606 aa23.06■■□□□ 1.28
BRCA1-218ENST00000489037 CLIP1P30622 1438 aa23.04■■□□□ 1.28
BRCA1-218ENST00000489037 MAGI3Q5TCQ9 1506 aa23.01■■□□□ 1.27
BRCA1-218ENST00000489037 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
BRCA1-218ENST00000489037 ABCA9Q8IUA7 1624 aa22.99■■□□□ 1.27
BRCA1-218ENST00000489037 CDK13Q14004 1512 aaKnown RBP22.98■■□□□ 1.27
BRCA1-218ENST00000489037 CASKIN1Q8WXD9 1431 aa22.92■■□□□ 1.26
BRCA1-218ENST00000489037 PCF11O94913 1555 aaKnown RBP22.9■■□□□ 1.26
BRCA1-218ENST00000489037 LOC105371045A0A1W2PR82 267 aa22.89■■□□□ 1.25
BRCA1-218ENST00000489037 CEP162Q5TB80 1403 aa22.89■■□□□ 1.25
BRCA1-218ENST00000489037 PHLDB1Q86UU1 1377 aa22.89■■□□□ 1.25
BRCA1-218ENST00000489037 CCDC18Q5T9S5 1454 aa22.88■■□□□ 1.25
BRCA1-218ENST00000489037 FYCO1Q9BQS8 1478 aa22.87■■□□□ 1.25
BRCA1-218ENST00000489037 LRRIQ1Q96JM4 1722 aa22.87■■□□□ 1.25
BRCA1-218ENST00000489037 COL17A1Q9UMD9 1497 aaPredicted RBP22.85■■□□□ 1.25
BRCA1-218ENST00000489037 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.85■■□□□ 1.25
BRCA1-218ENST00000489037 NEO1Q92859 1461 aa22.83■■□□□ 1.25
BRCA1-218ENST00000489037 TROQ12816 1431 aaPredicted RBP22.82■■□□□ 1.24
BRCA1-218ENST00000489037 KIF14Q15058 1648 aa22.81■■□□□ 1.24
BRCA1-218ENST00000489037 ARAP3Q8WWN8 1544 aa22.81■■□□□ 1.24
BRCA1-218ENST00000489037 TTC37Q6PGP7 1564 aa22.8■■□□□ 1.24
BRCA1-218ENST00000489037 CFAP74Q9C0B2 1584 aa22.8■■□□□ 1.24
BRCA1-218ENST00000489037 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
BRCA1-218ENST00000489037 MYO5CQ9NQX4 1742 aa22.77■■□□□ 1.23
BRCA1-218ENST00000489037 FANCAO15360 1455 aa22.76■■□□□ 1.23
BRCA1-218ENST00000489037 PLCH2O75038 1416 aa22.74■■□□□ 1.23
BRCA1-218ENST00000489037 AKNAQ7Z591 1439 aa22.74■■□□□ 1.23
BRCA1-218ENST00000489037 EFCAB2Q5VUJ9 269 aa22.71■■□□□ 1.23
BRCA1-218ENST00000489037 RAPGEF3O95398 923 aa22.7■■□□□ 1.22
BRCA1-218ENST00000489037 DENND4BO75064 1496 aaPredicted RBP22.69■■□□□ 1.22
BRCA1-218ENST00000489037 MTUS2Q5JR59 1369 aa22.66■■□□□ 1.22
BRCA1-218ENST00000489037 ARHGAP5Q13017 1502 aa22.66■■□□□ 1.22
BRCA1-218ENST00000489037 ADGRL1O94910 1474 aa22.65■■□□□ 1.22
BRCA1-218ENST00000489037 VPS8Q8N3P4 1428 aa22.63■■□□□ 1.21
BRCA1-218ENST00000489037 SCAPERQ9BY12 1400 aa22.62■■□□□ 1.21
BRCA1-218ENST00000489037 RICTORQ6R327 1708 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms