RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 EFCAB5A4FU69 1503 aa14.85□□□□□ -0.03
SF3B1-211ENST00000487698 RANGAP1P46060 587 aaPredicted RBP14.84□□□□□ -0.03
SF3B1-211ENST00000487698 SAMD9Q5K651 1589 aa14.81□□□□□ -0.04
SF3B1-211ENST00000487698 GRIN2AQ12879 1464 aa14.81□□□□□ -0.04
SF3B1-211ENST00000487698 SYNJ2O15056 1496 aa14.8□□□□□ -0.04
SF3B1-211ENST00000487698 TRIM26Q12899 539 aaPredicted RBP14.79□□□□□ -0.04
SF3B1-211ENST00000487698 IQGAP2Q13576 1575 aa14.79□□□□□ -0.04
SF3B1-211ENST00000487698 PCGF6Q9BYE7 350 aa14.76□□□□□ -0.05
SF3B1-211ENST00000487698 CEP170Q5SW79 1584 aa14.74□□□□□ -0.05
SF3B1-211ENST00000487698 KIAA0586Q9BVV6 1533 aa14.73□□□□□ -0.05
SF3B1-211ENST00000487698 PPARGC1BQ86YN6 1023 aaKnown RBP14.73□□□□□ -0.05
SF3B1-211ENST00000487698 FHOD3Q2V2M9 1422 aa14.73□□□□□ -0.05
SF3B1-211ENST00000487698 UGGT2Q9NYU1 1516 aa14.72□□□□□ -0.05
SF3B1-211ENST00000487698 PCF11O94913 1555 aaKnown RBP14.72□□□□□ -0.05
SF3B1-211ENST00000487698 NUP160Q12769 1436 aa14.71□□□□□ -0.05
SF3B1-211ENST00000487698 CHD1O14646 1710 aa14.69□□□□□ -0.06
SF3B1-211ENST00000487698 MAP3K1Q13233 1512 aa14.68□□□□□ -0.06
SF3B1-211ENST00000487698 CHMP7Q8WUX9 453 aaPredicted RBP14.68□□□□□ -0.06
SF3B1-211ENST00000487698 CFAP43Q8NDM7 1665 aa14.67□□□□□ -0.06
SF3B1-211ENST00000487698 FYCO1Q9BQS8 1478 aa14.67□□□□□ -0.06
SF3B1-211ENST00000487698 FMN1Q68DA7 1419 aa14.67□□□□□ -0.06
SF3B1-211ENST00000487698 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
SF3B1-211ENST00000487698 CASKIN1Q8WXD9 1431 aa14.66□□□□□ -0.06
SF3B1-211ENST00000487698 KIAA0556O60303 1618 aa14.66□□□□□ -0.06
SF3B1-211ENST00000487698 APLP2Q06481 763 aa14.65□□□□□ -0.06
SF3B1-211ENST00000487698 P3H3Q8IVL6 736 aa14.65□□□□□ -0.06
SF3B1-211ENST00000487698 DISP1Q96F81 1524 aa14.64□□□□□ -0.07
SF3B1-211ENST00000487698 LRRIQ1Q96JM4 1722 aa14.62□□□□□ -0.07
SF3B1-211ENST00000487698 FBLN2P98095 1184 aa14.61□□□□□ -0.07
SF3B1-211ENST00000487698 TTBK1Q5TCY1 1321 aaPredicted RBP14.6□□□□□ -0.07
SF3B1-211ENST00000487698 KANK4Q5T7N3 995 aaPredicted RBP14.58□□□□□ -0.08
SF3B1-211ENST00000487698 LRRC9Q6ZRR7 1453 aa14.56□□□□□ -0.08
SF3B1-211ENST00000487698 HECW1Q76N89 1606 aa14.56□□□□□ -0.08
SF3B1-211ENST00000487698 SHROOM2Q13796 1616 aa14.55□□□□□ -0.08
SF3B1-211ENST00000487698 JPH4Q96JJ6 628 aa14.51□□□□□ -0.09
SF3B1-211ENST00000487698 CCDC18Q5T9S5 1454 aa14.51□□□□□ -0.09
SF3B1-211ENST00000487698 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
SF3B1-211ENST00000487698 CLASP1Q7Z460 1538 aa14.51□□□□□ -0.09
SF3B1-211ENST00000487698 RAPGEF6Q8TEU7 1601 aa14.5□□□□□ -0.09
SF3B1-211ENST00000487698 RRBP1Q9P2E9 1410 aaKnown RBP14.48□□□□□ -0.09
SF3B1-211ENST00000487698 EPRSP07814 1512 aaKnown RBP14.48□□□□□ -0.09
SF3B1-211ENST00000487698 ATP1B4Q9UN42 357 aaPredicted RBP14.47□□□□□ -0.09
SF3B1-211ENST00000487698 EHBP1L1Q8N3D4 1523 aa14.46□□□□□ -0.1
SF3B1-211ENST00000487698 PRG4Q92954 1404 aaPredicted RBP14.46□□□□□ -0.1
SF3B1-211ENST00000487698 NUP153P49790 1475 aaKnown RBP14.45□□□□□ -0.1
SF3B1-211ENST00000487698 MAGI3Q5TCQ9 1506 aa14.45□□□□□ -0.1
SF3B1-211ENST00000487698 CDK13Q14004 1512 aaKnown RBP14.44□□□□□ -0.1
SF3B1-211ENST00000487698 ABCA8O94911 1581 aa14.44□□□□□ -0.1
SF3B1-211ENST00000487698 SUPT6HQ7KZ85 1726 aaKnown RBP14.43□□□□□ -0.1
SF3B1-211ENST00000487698 PLB1Q6P1J6 1458 aa14.42□□□□□ -0.1
SF3B1-211ENST00000487698 PHLDB1Q86UU1 1377 aa14.42□□□□□ -0.1
SF3B1-211ENST00000487698 MTUS2Q5JR59 1369 aa14.41□□□□□ -0.1
SF3B1-211ENST00000487698 ARHGEF11O15085 1522 aa14.41□□□□□ -0.1
SF3B1-211ENST00000487698 ERCC6L2Q5T890 1561 aa14.4□□□□□ -0.1
SF3B1-211ENST00000487698 CCNB3Q8WWL7 1395 aa14.39□□□□□ -0.11
SF3B1-211ENST00000487698 HRCP23327 699 aa14.38□□□□□ -0.11
SF3B1-211ENST00000487698 NCOA2Q15596 1464 aa14.38□□□□□ -0.11
SF3B1-211ENST00000487698 PTPRGP23470 1445 aa14.35□□□□□ -0.11
SF3B1-211ENST00000487698 ADCY10Q96PN6 1610 aa14.33□□□□□ -0.12
SF3B1-211ENST00000487698 FGD6Q6ZV73 1430 aa14.33□□□□□ -0.12
SF3B1-211ENST00000487698 MYOM3Q5VTT5 1437 aa14.32□□□□□ -0.12
SF3B1-211ENST00000487698 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.32□□□□□ -0.12
SF3B1-211ENST00000487698 HNRNPUL2Q1KMD3 747 aaKnown RBP14.31□□□□□ -0.12
SF3B1-211ENST00000487698 ATP10BO94823 1461 aa14.3□□□□□ -0.12
SF3B1-211ENST00000487698 ARID3CA6NKF2 412 aa14.3□□□□□ -0.12
SF3B1-211ENST00000487698 UACAQ9BZF9 1416 aa14.3□□□□□ -0.12
SF3B1-211ENST00000487698 ABCC2Q92887 1545 aa14.29□□□□□ -0.12
SF3B1-211ENST00000487698 TROQ12816 1431 aaPredicted RBP14.29□□□□□ -0.12
SF3B1-211ENST00000487698 PTPN23Q9H3S7 1636 aa14.27□□□□□ -0.12
SF3B1-211ENST00000487698 KIF14Q15058 1648 aa14.27□□□□□ -0.13
SF3B1-211ENST00000487698 CDK11AQ9UQ88 783 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-211ENST00000487698 UHRF1BP1LA0JNW5 1464 aa14.26□□□□□ -0.13
SF3B1-211ENST00000487698 TCOF1Q13428 1488 aaKnown RBP14.26□□□□□ -0.13
SF3B1-211ENST00000487698 MIA2Q96PC5 1412 aa14.24□□□□□ -0.13
SF3B1-211ENST00000487698 ITSN2Q9NZM3 1697 aa14.24□□□□□ -0.13
SF3B1-211ENST00000487698 OSCARQ8IYS5 282 aa14.24□□□□□ -0.13
SF3B1-211ENST00000487698 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.23□□□□□ -0.13
SF3B1-211ENST00000487698 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.13
SF3B1-211ENST00000487698 ZCCHC11Q5TAX3 1644 aaKnown RBP14.21□□□□□ -0.13
SF3B1-211ENST00000487698 ABCC10Q5T3U5 1492 aa14.2□□□□□ -0.14
SF3B1-211ENST00000487698 CDC42BPAQ5VT25 1732 aa14.2□□□□□ -0.14
SF3B1-211ENST00000487698 KDM5BQ9UGL1 1544 aa14.2□□□□□ -0.14
SF3B1-211ENST00000487698 ZEB1P37275 1124 aaPredicted RBP14.18□□□□□ -0.14
SF3B1-211ENST00000487698 GPATCH8Q9UKJ3 1502 aaKnown RBP14.18□□□□□ -0.14
SF3B1-211ENST00000487698 PLEKHD1A6NEE1 506 aa14.17□□□□□ -0.14
SF3B1-211ENST00000487698 CCER1Q8TC90 406 aaPredicted RBP14.17□□□□□ -0.14
SF3B1-211ENST00000487698 ITGAEP38570 1179 aa14.17□□□□□ -0.14
SF3B1-211ENST00000487698 PTPRKQ15262 1439 aa14.16□□□□□ -0.14
SF3B1-211ENST00000487698 DNMT1P26358 1616 aaKnown RBP14.15□□□□□ -0.14
SF3B1-211ENST00000487698 PREX2Q70Z35 1606 aa14.14□□□□□ -0.15
SF3B1-211ENST00000487698 SETD5Q9C0A6 1442 aa14.14□□□□□ -0.15
SF3B1-211ENST00000487698 TTC37Q6PGP7 1564 aa14.12□□□□□ -0.15
SF3B1-211ENST00000487698 CAMSAP2Q08AD1 1489 aa14.12□□□□□ -0.15
SF3B1-211ENST00000487698 RAB3GAP2Q9H2M9 1393 aa14.12□□□□□ -0.15
SF3B1-211ENST00000487698 CDC42BPBQ9Y5S2 1711 aa14.12□□□□□ -0.15
SF3B1-211ENST00000487698 GCC2Q8IWJ2 1684 aa14.12□□□□□ -0.15
SF3B1-211ENST00000487698 HFM1A2PYH4 1435 aa14.11□□□□□ -0.15
SF3B1-211ENST00000487698 CROCC2H7BZ55 1655 aa14.11□□□□□ -0.15
SF3B1-211ENST00000487698 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.11□□□□□ -0.15
SF3B1-211ENST00000487698 DHX57Q6P158 1386 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms