RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 RUSC2Q8N2Y8 1516 aa34.83■■■■□ 3.17
HDAC4-209ENST00000487617 PRG4Q92954 1404 aaPredicted RBP34.81■■■■□ 3.16
HDAC4-209ENST00000487617 KIAA0586Q9BVV6 1533 aa34.76■■■■□ 3.16
HDAC4-209ENST00000487617 TRHP20396 242 aaPredicted RBP34.71■■■■□ 3.15
HDAC4-209ENST00000487617 RAPGEF2Q9Y4G8 1499 aa34.62■■■■□ 3.13
HDAC4-209ENST00000487617 IQGAP2Q13576 1575 aa34.49■■■■□ 3.11
HDAC4-209ENST00000487617 CARMIL2Q6F5E8 1435 aa34.43■■■■□ 3.1
HDAC4-209ENST00000487617 PRXQ9BXM0 1461 aa34.4■■■■□ 3.1
HDAC4-209ENST00000487617 PTPRGP23470 1445 aa34.37■■■■□ 3.09
HDAC4-209ENST00000487617 TTBK1Q5TCY1 1321 aaPredicted RBP34.36■■■■□ 3.09
HDAC4-209ENST00000487617 TNIKQ9UKE5 1360 aa34.35■■■■□ 3.09
HDAC4-209ENST00000487617 NPM1P06748 294 aaKnown RBP eCLIP34.33■■■■□ 3.09
HDAC4-209ENST00000487617 CSRNP3Q8WYN3 585 aa34.33■■■■□ 3.09
HDAC4-209ENST00000487617 UGGT2Q9NYU1 1516 aa34.3■■■■□ 3.08
HDAC4-209ENST00000487617 DISP1Q96F81 1524 aa34.29■■■■□ 3.08
HDAC4-209ENST00000487617 ADCY10Q96PN6 1610 aa34.27■■■■□ 3.08
HDAC4-209ENST00000487617 EEA1Q15075 1411 aa34.26■■■■□ 3.07
HDAC4-209ENST00000487617 CHIC1Q5VXU3 224 aa34.22■■■■□ 3.07
HDAC4-209ENST00000487617 CTTNBP2Q8WZ74 1663 aa34.22■■■■□ 3.07
HDAC4-209ENST00000487617 FAM9AQ8IZU1 332 aaPredicted RBP34.19■■■■□ 3.06
HDAC4-209ENST00000487617 KIAA0556O60303 1618 aa34.16■■■■□ 3.06
HDAC4-209ENST00000487617 MAPKBP1O60336 1514 aa34.13■■■■□ 3.05
HDAC4-209ENST00000487617 UACAQ9BZF9 1416 aa34.11■■■■□ 3.05
HDAC4-209ENST00000487617 GOLGA3Q08378 1498 aa34.1■■■■□ 3.05
HDAC4-209ENST00000487617 ABCC2Q92887 1545 aa34.07■■■■□ 3.04
HDAC4-209ENST00000487617 UHRF1BP1LA0JNW5 1464 aa34.07■■■■□ 3.04
HDAC4-209ENST00000487617 FAM69CQ0P6D2 419 aa34.05■■■■□ 3.04
HDAC4-209ENST00000487617 ABCC10Q5T3U5 1492 aa34.05■■■■□ 3.04
HDAC4-209ENST00000487617 KIF13AQ9H1H9 1805 aa34■■■■□ 3.03
HDAC4-209ENST00000487617 DIP2BQ9P265 1576 aa33.94■■■■□ 3.02
HDAC4-209ENST00000487617 P3H3Q8IVL6 736 aa33.92■■■■□ 3.02
HDAC4-209ENST00000487617 KDM5BQ9UGL1 1544 aa33.9■■■■□ 3.02
HDAC4-209ENST00000487617 PLB1Q6P1J6 1458 aa33.9■■■■□ 3.02
HDAC4-209ENST00000487617 ASXL2Q76L83 1435 aa33.9■■■■□ 3.02
HDAC4-209ENST00000487617 KIF21BO75037 1637 aa33.89■■■■□ 3.02
HDAC4-209ENST00000487617 RANGAP1P46060 587 aaPredicted RBP33.85■■■■□ 3.01
HDAC4-209ENST00000487617 ABCA8O94911 1581 aa33.82■■■■□ 3
HDAC4-209ENST00000487617 ZCCHC11Q5TAX3 1644 aaKnown RBP33.8■■■■□ 3
HDAC4-209ENST00000487617 EHMT2Q96KQ7 1210 aa33.8■■■■□ 3
HDAC4-209ENST00000487617 SAMD9Q5K651 1589 aa33.8■■■■□ 3
HDAC4-209ENST00000487617 UBTFP17480 764 aaKnown RBP33.73■■■□□ 2.99
HDAC4-209ENST00000487617 GLI2P10070 1586 aa33.7■■■□□ 2.99
HDAC4-209ENST00000487617 EPRSP07814 1512 aaKnown RBP33.69■■■□□ 2.98
HDAC4-209ENST00000487617 WDR7Q9Y4E6 1490 aa33.67■■■□□ 2.98
HDAC4-209ENST00000487617 FHOD3Q2V2M9 1422 aa33.66■■■□□ 2.98
HDAC4-209ENST00000487617 TSPOAP1O95153 1857 aa33.65■■■□□ 2.98
HDAC4-209ENST00000487617 ARID3CA6NKF2 412 aa33.65■■■□□ 2.98
HDAC4-209ENST00000487617 EFCAB5A4FU69 1503 aa33.6■■■□□ 2.97
HDAC4-209ENST00000487617 ATP10BO94823 1461 aa33.57■■■□□ 2.97
HDAC4-209ENST00000487617 RAPGEF6Q8TEU7 1601 aa33.57■■■□□ 2.96
HDAC4-209ENST00000487617 KCNH8Q96L42 1107 aa33.56■■■□□ 2.96
HDAC4-209ENST00000487617 KDM6BO15054 1643 aa33.51■■■□□ 2.96
HDAC4-209ENST00000487617 MAP3K4Q9Y6R4 1608 aa33.51■■■□□ 2.96
HDAC4-209ENST00000487617 PPRC1Q5VV67 1664 aaKnown RBP33.49■■■□□ 2.95
HDAC4-209ENST00000487617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.49■■■□□ 2.95
HDAC4-209ENST00000487617 HNRNPUL2Q1KMD3 747 aaKnown RBP33.49■■■□□ 2.95
HDAC4-209ENST00000487617 NUP153P49790 1475 aaKnown RBP33.47■■■□□ 2.95
HDAC4-209ENST00000487617 TEX14Q8IWB6 1497 aa33.44■■■□□ 2.94
HDAC4-209ENST00000487617 CD109Q6YHK3 1445 aa33.42■■■□□ 2.94
HDAC4-209ENST00000487617 ARHGAP35Q9NRY4 1499 aa33.41■■■□□ 2.94
HDAC4-209ENST00000487617 CFAP43Q8NDM7 1665 aa33.35■■■□□ 2.93
HDAC4-209ENST00000487617 MAGI3Q5TCQ9 1506 aa33.33■■■□□ 2.93
HDAC4-209ENST00000487617 FMN1Q68DA7 1419 aa33.33■■■□□ 2.93
HDAC4-209ENST00000487617 PLEKHD1A6NEE1 506 aa33.3■■■□□ 2.92
HDAC4-209ENST00000487617 COL17A1Q9UMD9 1497 aaPredicted RBP33.3■■■□□ 2.92
HDAC4-209ENST00000487617 ATP1B4Q9UN42 357 aaPredicted RBP33.28■■■□□ 2.92
HDAC4-209ENST00000487617 AEBP2Q6ZN18 517 aaPredicted RBP33.24■■■□□ 2.91
HDAC4-209ENST00000487617 ABCA9Q8IUA7 1624 aa33.23■■■□□ 2.91
HDAC4-209ENST00000487617 CDK13Q14004 1512 aaKnown RBP33.21■■■□□ 2.91
HDAC4-209ENST00000487617 HECW1Q76N89 1606 aa33.18■■■□□ 2.9
HDAC4-209ENST00000487617 CLIP1P30622 1438 aa33.12■■■□□ 2.89
HDAC4-209ENST00000487617 PHLDB1Q86UU1 1377 aa33.08■■■□□ 2.89
HDAC4-209ENST00000487617 CDK11AQ9UQ88 783 aaPredicted RBP33.07■■■□□ 2.88
HDAC4-209ENST00000487617 ARAP3Q8WWN8 1544 aa33.05■■■□□ 2.88
HDAC4-209ENST00000487617 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.04■■■□□ 2.88
HDAC4-209ENST00000487617 CASKIN1Q8WXD9 1431 aa33.03■■■□□ 2.88
HDAC4-209ENST00000487617 NEO1Q92859 1461 aa33.03■■■□□ 2.88
HDAC4-209ENST00000487617 PCF11O94913 1555 aaKnown RBP33■■■□□ 2.87
HDAC4-209ENST00000487617 TTC37Q6PGP7 1564 aa32.98■■■□□ 2.87
HDAC4-209ENST00000487617 KDM4FA0A1W2PPD8 638 aa32.97■■■□□ 2.87
HDAC4-209ENST00000487617 TROQ12816 1431 aaPredicted RBP32.94■■■□□ 2.86
HDAC4-209ENST00000487617 RAPGEF3O95398 923 aa32.93■■■□□ 2.86
HDAC4-209ENST00000487617 FANCAO15360 1455 aa32.93■■■□□ 2.86
HDAC4-209ENST00000487617 CCDC18Q5T9S5 1454 aa32.93■■■□□ 2.86
HDAC4-209ENST00000487617 LRRIQ1Q96JM4 1722 aa32.92■■■□□ 2.86
HDAC4-209ENST00000487617 FYCO1Q9BQS8 1478 aa32.92■■■□□ 2.86
HDAC4-209ENST00000487617 AKNAQ7Z591 1439 aa32.9■■■□□ 2.86
HDAC4-209ENST00000487617 PLCH2O75038 1416 aa32.87■■■□□ 2.85
HDAC4-209ENST00000487617 CEP162Q5TB80 1403 aa32.87■■■□□ 2.85
HDAC4-209ENST00000487617 KIF14Q15058 1648 aa32.86■■■□□ 2.85
HDAC4-209ENST00000487617 CFAP74Q9C0B2 1584 aa32.86■■■□□ 2.85
HDAC4-209ENST00000487617 LOC105371045A0A1W2PR82 267 aa32.85■■■□□ 2.85
HDAC4-209ENST00000487617 DENND4BO75064 1496 aaPredicted RBP32.83■■■□□ 2.85
HDAC4-209ENST00000487617 ADGRL1O94910 1474 aa32.83■■■□□ 2.85
HDAC4-209ENST00000487617 EFCAB2Q5VUJ9 269 aa32.79■■■□□ 2.84
HDAC4-209ENST00000487617 FRMPD1Q5SYB0 1578 aa32.79■■■□□ 2.84
HDAC4-209ENST00000487617 MYO5CQ9NQX4 1742 aa32.74■■■□□ 2.83
HDAC4-209ENST00000487617 SCAPERQ9BY12 1400 aa32.72■■■□□ 2.83
HDAC4-209ENST00000487617 ARHGAP5Q13017 1502 aa32.7■■■□□ 2.83
HDAC4-209ENST00000487617 RICTORQ6R327 1708 aa32.69■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms