RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 JPH4Q96JJ6 628 aa27.69■■■□□ 2.02
MCF2L-228ENST00000487354 ADCY10Q96PN6 1610 aa27.69■■■□□ 2.02
MCF2L-228ENST00000487354 MAPKBP1O60336 1514 aa27.68■■■□□ 2.02
MCF2L-228ENST00000487354 DIP2BQ9P265 1576 aa27.67■■■□□ 2.02
MCF2L-228ENST00000487354 ABCC10Q5T3U5 1492 aa27.66■■■□□ 2.02
MCF2L-228ENST00000487354 CUL7Q14999 1698 aa27.53■■■□□ 2
MCF2L-228ENST00000487354 KIAA0586Q9BVV6 1533 aa27.53■■■□□ 2
MCF2L-228ENST00000487354 FAM69CQ0P6D2 419 aa27.52■■■□□ 2
MCF2L-228ENST00000487354 IGF1RP08069 1367 aa27.48■■□□□ 1.99
MCF2L-228ENST00000487354 TSPOAP1O95153 1857 aa27.47■■□□□ 1.99
MCF2L-228ENST00000487354 KDM6BO15054 1643 aa27.45■■□□□ 1.99
MCF2L-228ENST00000487354 NPM1P06748 294 aaKnown RBP eCLIP27.4■■□□□ 1.98
MCF2L-228ENST00000487354 KIF27Q86VH2 1401 aa27.4■■□□□ 1.98
MCF2L-228ENST00000487354 PPRC1Q5VV67 1664 aaKnown RBP27.35■■□□□ 1.97
MCF2L-228ENST00000487354 KDM4FA0A1W2PPD8 638 aa27.31■■□□□ 1.96
MCF2L-228ENST00000487354 ABCC2Q92887 1545 aa27.28■■□□□ 1.96
MCF2L-228ENST00000487354 PTPRGP23470 1445 aa27.28■■□□□ 1.96
MCF2L-228ENST00000487354 IQGAP2Q13576 1575 aa27.26■■□□□ 1.96
MCF2L-228ENST00000487354 CARMIL1Q5VZK9 1371 aa27.25■■□□□ 1.95
MCF2L-228ENST00000487354 GLI2P10070 1586 aa27.25■■□□□ 1.95
MCF2L-228ENST00000487354 TNIKQ9UKE5 1360 aa27.22■■□□□ 1.95
MCF2L-228ENST00000487354 UHRF1BP1LA0JNW5 1464 aa27.2■■□□□ 1.95
MCF2L-228ENST00000487354 ASXL2Q76L83 1435 aa27.2■■□□□ 1.94
MCF2L-228ENST00000487354 DISP1Q96F81 1524 aa27.2■■□□□ 1.94
MCF2L-228ENST00000487354 CARMIL2Q6F5E8 1435 aa27.17■■□□□ 1.94
MCF2L-228ENST00000487354 PLB1Q6P1J6 1458 aa27.16■■□□□ 1.94
MCF2L-228ENST00000487354 MAP3K4Q9Y6R4 1608 aa27.13■■□□□ 1.93
MCF2L-228ENST00000487354 TTBK1Q5TCY1 1321 aaPredicted RBP27.12■■□□□ 1.93
MCF2L-228ENST00000487354 UACAQ9BZF9 1416 aa27.11■■□□□ 1.93
MCF2L-228ENST00000487354 KDM5BQ9UGL1 1544 aa27.1■■□□□ 1.93
MCF2L-228ENST00000487354 COL17A1Q9UMD9 1497 aaPredicted RBP27.09■■□□□ 1.93
MCF2L-228ENST00000487354 UGGT2Q9NYU1 1516 aa27.09■■□□□ 1.93
MCF2L-228ENST00000487354 ZCCHC11Q5TAX3 1644 aaKnown RBP27.08■■□□□ 1.93
MCF2L-228ENST00000487354 EPRSP07814 1512 aaKnown RBP27.07■■□□□ 1.92
MCF2L-228ENST00000487354 KIAA0556O60303 1618 aa27.06■■□□□ 1.92
MCF2L-228ENST00000487354 ADGRL1O94910 1474 aa27.04■■□□□ 1.92
MCF2L-228ENST00000487354 RAPGEF2Q9Y4G8 1499 aa27■■□□□ 1.91
MCF2L-228ENST00000487354 CTTNBP2Q8WZ74 1663 aa26.94■■□□□ 1.9
MCF2L-228ENST00000487354 TEX14Q8IWB6 1497 aa26.92■■□□□ 1.9
MCF2L-228ENST00000487354 WDR7Q9Y4E6 1490 aa26.89■■□□□ 1.9
MCF2L-228ENST00000487354 ABCA8O94911 1581 aa26.84■■□□□ 1.89
MCF2L-228ENST00000487354 HECW2Q9P2P5 1572 aa26.84■■□□□ 1.89
MCF2L-228ENST00000487354 CFAP43Q8NDM7 1665 aa26.83■■□□□ 1.89
MCF2L-228ENST00000487354 ILDR1Q86SU0 546 aaPredicted RBP26.81■■□□□ 1.88
MCF2L-228ENST00000487354 MAGI3Q5TCQ9 1506 aa26.78■■□□□ 1.88
MCF2L-228ENST00000487354 GOLGA3Q08378 1498 aa26.72■■□□□ 1.87
MCF2L-228ENST00000487354 CD109Q6YHK3 1445 aa26.7■■□□□ 1.86
MCF2L-228ENST00000487354 KIF21BO75037 1637 aa26.68■■□□□ 1.86
MCF2L-228ENST00000487354 PRXQ9BXM0 1461 aa26.68■■□□□ 1.86
MCF2L-228ENST00000487354 ARAP3Q8WWN8 1544 aa26.59■■□□□ 1.85
MCF2L-228ENST00000487354 KCNH8Q96L42 1107 aa26.58■■□□□ 1.85
MCF2L-228ENST00000487354 ABCA9Q8IUA7 1624 aa26.57■■□□□ 1.84
MCF2L-228ENST00000487354 ATP10BO94823 1461 aa26.55■■□□□ 1.84
MCF2L-228ENST00000487354 SAMD9Q5K651 1589 aa26.53■■□□□ 1.84
MCF2L-228ENST00000487354 ADAMTSL3P82987 1691 aa26.5■■□□□ 1.83
MCF2L-228ENST00000487354 FRMPD1Q5SYB0 1578 aa26.48■■□□□ 1.83
MCF2L-228ENST00000487354 RAPGEF6Q8TEU7 1601 aa26.45■■□□□ 1.82
MCF2L-228ENST00000487354 ARID3CA6NKF2 412 aa26.44■■□□□ 1.82
MCF2L-228ENST00000487354 P3H3Q8IVL6 736 aa26.39■■□□□ 1.82
MCF2L-228ENST00000487354 BCORL1Q5H9F3 1711 aa26.39■■□□□ 1.81
MCF2L-228ENST00000487354 PTPRMP28827 1452 aa26.38■■□□□ 1.81
MCF2L-228ENST00000487354 NEO1Q92859 1461 aa26.37■■□□□ 1.81
MCF2L-228ENST00000487354 PHLDB1Q86UU1 1377 aa26.36■■□□□ 1.81
MCF2L-228ENST00000487354 NUP153P49790 1475 aaKnown RBP26.36■■□□□ 1.81
MCF2L-228ENST00000487354 MADDQ8WXG6 1647 aa26.34■■□□□ 1.81
MCF2L-228ENST00000487354 RAPGEF3O95398 923 aa26.32■■□□□ 1.8
MCF2L-228ENST00000487354 RICTORQ6R327 1708 aa26.31■■□□□ 1.8
MCF2L-228ENST00000487354 ARHGEF40Q8TER5 1519 aa26.29■■□□□ 1.8
MCF2L-228ENST00000487354 SIGLEC1Q9BZZ2 1709 aa26.25■■□□□ 1.79
MCF2L-228ENST00000487354 PCF11O94913 1555 aaKnown RBP26.24■■□□□ 1.79
MCF2L-228ENST00000487354 LMTK3Q96Q04 1460 aa26.23■■□□□ 1.79
MCF2L-228ENST00000487354 RIMS1Q86UR5 1692 aaKnown RBP26.23■■□□□ 1.79
MCF2L-228ENST00000487354 FHOD3Q2V2M9 1422 aa26.22■■□□□ 1.79
MCF2L-228ENST00000487354 CSRNP3Q8WYN3 585 aa26.21■■□□□ 1.79
MCF2L-228ENST00000487354 TTC37Q6PGP7 1564 aa26.2■■□□□ 1.79
MCF2L-228ENST00000487354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.19■■□□□ 1.78
MCF2L-228ENST00000487354 CFAP74Q9C0B2 1584 aa26.17■■□□□ 1.78
MCF2L-228ENST00000487354 FBXO41Q8TF61 875 aa26.17■■□□□ 1.78
MCF2L-228ENST00000487354 ZMYM4Q5VZL5 1548 aa26.17■■□□□ 1.78
MCF2L-228ENST00000487354 FAM9AQ8IZU1 332 aaPredicted RBP26.16■■□□□ 1.78
MCF2L-228ENST00000487354 DENND4BO75064 1496 aaPredicted RBP26.15■■□□□ 1.78
MCF2L-228ENST00000487354 AKNAQ7Z591 1439 aa26.14■■□□□ 1.77
MCF2L-228ENST00000487354 FANCAO15360 1455 aa26.12■■□□□ 1.77
MCF2L-228ENST00000487354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.12■■□□□ 1.77
MCF2L-228ENST00000487354 HNRNPUL2Q1KMD3 747 aaKnown RBP26.12■■□□□ 1.77
MCF2L-228ENST00000487354 EFCAB5A4FU69 1503 aa26.09■■□□□ 1.77
MCF2L-228ENST00000487354 EEA1Q15075 1411 aa26.08■■□□□ 1.77
MCF2L-228ENST00000487354 ARID4BQ4LE39 1312 aaPredicted RBP26.08■■□□□ 1.77
MCF2L-228ENST00000487354 YEATS2Q9ULM3 1422 aa26.07■■□□□ 1.76
MCF2L-228ENST00000487354 ZFYVE16Q7Z3T8 1539 aa26.07■■□□□ 1.76
MCF2L-228ENST00000487354 CDK13Q14004 1512 aaKnown RBP26.06■■□□□ 1.76
MCF2L-228ENST00000487354 HECW1Q76N89 1606 aa26.05■■□□□ 1.76
MCF2L-228ENST00000487354 RANGAP1P46060 587 aaPredicted RBP26.04■■□□□ 1.76
MCF2L-228ENST00000487354 FER1L4A9Z1Z3 1794 aa26.04■■□□□ 1.76
MCF2L-228ENST00000487354 PLEKHD1A6NEE1 506 aa26.02■■□□□ 1.76
MCF2L-228ENST00000487354 MAGI2Q86UL8 1455 aa25.99■■□□□ 1.75
MCF2L-228ENST00000487354 POGZQ7Z3K3 1410 aa25.98■■□□□ 1.75
MCF2L-228ENST00000487354 MYO5CQ9NQX4 1742 aa25.94■■□□□ 1.74
MCF2L-228ENST00000487354 HSPA2P54652 639 aa25.94■■□□□ 1.74
MCF2L-228ENST00000487354 PLCH2O75038 1416 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms