RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RAPGEF2Q9Y4G8 1499 aa24.78■■□□□ 1.56
USP4-212ENST00000486549 ERCC6L2Q5T890 1561 aa24.78■■□□□ 1.56
USP4-212ENST00000486549 KIAA0586Q9BVV6 1533 aa24.74■■□□□ 1.55
USP4-212ENST00000486549 TRHP20396 242 aaPredicted RBP24.72■■□□□ 1.55
USP4-212ENST00000486549 PRG4Q92954 1404 aaPredicted RBP24.7■■□□□ 1.55
USP4-212ENST00000486549 JPH4Q96JJ6 628 aa24.7■■□□□ 1.54
USP4-212ENST00000486549 EEA1Q15075 1411 aa24.69■■□□□ 1.54
USP4-212ENST00000486549 FAM9AQ8IZU1 332 aaPredicted RBP24.68■■□□□ 1.54
USP4-212ENST00000486549 PRXQ9BXM0 1461 aa24.68■■□□□ 1.54
USP4-212ENST00000486549 CSRNP3Q8WYN3 585 aa24.66■■□□□ 1.54
USP4-212ENST00000486549 IQGAP2Q13576 1575 aa24.66■■□□□ 1.54
USP4-212ENST00000486549 CTTNBP2Q8WZ74 1663 aa24.62■■□□□ 1.53
USP4-212ENST00000486549 CARMIL2Q6F5E8 1435 aa24.49■■□□□ 1.51
USP4-212ENST00000486549 KIF21BO75037 1637 aa24.48■■□□□ 1.51
USP4-212ENST00000486549 UGGT2Q9NYU1 1516 aa24.48■■□□□ 1.51
USP4-212ENST00000486549 TTBK1Q5TCY1 1321 aaPredicted RBP24.45■■□□□ 1.5
USP4-212ENST00000486549 DISP1Q96F81 1524 aa24.45■■□□□ 1.5
USP4-212ENST00000486549 KIAA0556O60303 1618 aa24.43■■□□□ 1.5
USP4-212ENST00000486549 NPM1P06748 294 aaKnown RBP eCLIP24.42■■□□□ 1.5
USP4-212ENST00000486549 EHMT2Q96KQ7 1210 aa24.41■■□□□ 1.5
USP4-212ENST00000486549 TNIKQ9UKE5 1360 aa24.4■■□□□ 1.5
USP4-212ENST00000486549 PTPRGP23470 1445 aa24.39■■□□□ 1.5
USP4-212ENST00000486549 ADCY10Q96PN6 1610 aa24.35■■□□□ 1.49
USP4-212ENST00000486549 GOLGA3Q08378 1498 aa24.35■■□□□ 1.49
USP4-212ENST00000486549 RANGAP1P46060 587 aaPredicted RBP24.3■■□□□ 1.48
USP4-212ENST00000486549 UBTFP17480 764 aaKnown RBP24.28■■□□□ 1.48
USP4-212ENST00000486549 SAMD9Q5K651 1589 aa24.26■■□□□ 1.47
USP4-212ENST00000486549 P3H3Q8IVL6 736 aa24.25■■□□□ 1.47
USP4-212ENST00000486549 UACAQ9BZF9 1416 aa24.23■■□□□ 1.47
USP4-212ENST00000486549 MAPKBP1O60336 1514 aa24.23■■□□□ 1.47
USP4-212ENST00000486549 ABCC2Q92887 1545 aa24.21■■□□□ 1.47
USP4-212ENST00000486549 UHRF1BP1LA0JNW5 1464 aa24.19■■□□□ 1.46
USP4-212ENST00000486549 ABCC10Q5T3U5 1492 aa24.17■■□□□ 1.46
USP4-212ENST00000486549 PLB1Q6P1J6 1458 aa24.17■■□□□ 1.46
USP4-212ENST00000486549 FAM69CQ0P6D2 419 aa24.15■■□□□ 1.46
USP4-212ENST00000486549 EFCAB5A4FU69 1503 aa24.15■■□□□ 1.46
USP4-212ENST00000486549 FHOD3Q2V2M9 1422 aa24.14■■□□□ 1.45
USP4-212ENST00000486549 ABCA8O94911 1581 aa24.13■■□□□ 1.45
USP4-212ENST00000486549 ZCCHC11Q5TAX3 1644 aaKnown RBP24.1■■□□□ 1.45
USP4-212ENST00000486549 KIF13AQ9H1H9 1805 aa24.1■■□□□ 1.45
USP4-212ENST00000486549 KDM5BQ9UGL1 1544 aa24.09■■□□□ 1.45
USP4-212ENST00000486549 DIP2BQ9P265 1576 aa24.05■■□□□ 1.44
USP4-212ENST00000486549 RAPGEF6Q8TEU7 1601 aa24.05■■□□□ 1.44
USP4-212ENST00000486549 ASXL2Q76L83 1435 aa24.03■■□□□ 1.44
USP4-212ENST00000486549 ARHGAP35Q9NRY4 1499 aa24.03■■□□□ 1.44
USP4-212ENST00000486549 ARID3CA6NKF2 412 aa24.01■■□□□ 1.43
USP4-212ENST00000486549 NUP153P49790 1475 aaKnown RBP23.93■■□□□ 1.42
USP4-212ENST00000486549 ATP10BO94823 1461 aa23.92■■□□□ 1.42
USP4-212ENST00000486549 WDR7Q9Y4E6 1490 aa23.92■■□□□ 1.42
USP4-212ENST00000486549 TSPOAP1O95153 1857 aa23.91■■□□□ 1.42
USP4-212ENST00000486549 CLIP1P30622 1438 aa23.9■■□□□ 1.42
USP4-212ENST00000486549 FMN1Q68DA7 1419 aa23.9■■□□□ 1.42
USP4-212ENST00000486549 GLI2P10070 1586 aa23.9■■□□□ 1.42
USP4-212ENST00000486549 EPRSP07814 1512 aaKnown RBP23.89■■□□□ 1.41
USP4-212ENST00000486549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.88■■□□□ 1.41
USP4-212ENST00000486549 HNRNPUL2Q1KMD3 747 aaKnown RBP23.88■■□□□ 1.41
USP4-212ENST00000486549 LOC105371045A0A1W2PR82 267 aa23.85■■□□□ 1.41
USP4-212ENST00000486549 HECW1Q76N89 1606 aa23.84■■□□□ 1.41
USP4-212ENST00000486549 AEBP2Q6ZN18 517 aaPredicted RBP23.84■■□□□ 1.41
USP4-212ENST00000486549 ATP1B4Q9UN42 357 aaPredicted RBP23.84■■□□□ 1.41
USP4-212ENST00000486549 KCNH8Q96L42 1107 aa23.83■■□□□ 1.41
USP4-212ENST00000486549 KDM6BO15054 1643 aa23.81■■□□□ 1.4
USP4-212ENST00000486549 CDK13Q14004 1512 aaKnown RBP23.8■■□□□ 1.4
USP4-212ENST00000486549 CEP162Q5TB80 1403 aa23.8■■□□□ 1.4
USP4-212ENST00000486549 MAP3K4Q9Y6R4 1608 aa23.8■■□□□ 1.4
USP4-212ENST00000486549 PCF11O94913 1555 aaKnown RBP23.79■■□□□ 1.4
USP4-212ENST00000486549 TEX14Q8IWB6 1497 aa23.78■■□□□ 1.4
USP4-212ENST00000486549 PPRC1Q5VV67 1664 aaKnown RBP23.77■■□□□ 1.4
USP4-212ENST00000486549 CFAP43Q8NDM7 1665 aa23.75■■□□□ 1.39
USP4-212ENST00000486549 LRRIQ1Q96JM4 1722 aa23.75■■□□□ 1.39
USP4-212ENST00000486549 CASKIN1Q8WXD9 1431 aa23.72■■□□□ 1.39
USP4-212ENST00000486549 PLEKHD1A6NEE1 506 aa23.7■■□□□ 1.38
USP4-212ENST00000486549 CD109Q6YHK3 1445 aa23.68■■□□□ 1.38
USP4-212ENST00000486549 ABCA9Q8IUA7 1624 aa23.68■■□□□ 1.38
USP4-212ENST00000486549 FYCO1Q9BQS8 1478 aa23.68■■□□□ 1.38
USP4-212ENST00000486549 CCDC18Q5T9S5 1454 aa23.64■■□□□ 1.38
USP4-212ENST00000486549 MAGI3Q5TCQ9 1506 aa23.63■■□□□ 1.37
USP4-212ENST00000486549 CDK11AQ9UQ88 783 aaPredicted RBP23.6■■□□□ 1.37
USP4-212ENST00000486549 TTC37Q6PGP7 1564 aa23.59■■□□□ 1.37
USP4-212ENST00000486549 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP4-212ENST00000486549 KIF14Q15058 1648 aa23.56■■□□□ 1.36
USP4-212ENST00000486549 TROQ12816 1431 aaPredicted RBP23.56■■□□□ 1.36
USP4-212ENST00000486549 PHLDB1Q86UU1 1377 aa23.54■■□□□ 1.36
USP4-212ENST00000486549 COL17A1Q9UMD9 1497 aaPredicted RBP23.51■■□□□ 1.35
USP4-212ENST00000486549 VPS8Q8N3P4 1428 aa23.5■■□□□ 1.35
USP4-212ENST00000486549 MYO5CQ9NQX4 1742 aa23.48■■□□□ 1.35
USP4-212ENST00000486549 NEO1Q92859 1461 aa23.45■■□□□ 1.34
USP4-212ENST00000486549 CFAP74Q9C0B2 1584 aa23.44■■□□□ 1.34
USP4-212ENST00000486549 ARAP3Q8WWN8 1544 aa23.43■■□□□ 1.34
USP4-212ENST00000486549 FANCAO15360 1455 aa23.43■■□□□ 1.34
USP4-212ENST00000486549 KDM4FA0A1W2PPD8 638 aa23.42■■□□□ 1.34
USP4-212ENST00000486549 PLCH2O75038 1416 aa23.41■■□□□ 1.34
USP4-212ENST00000486549 MTUS2Q5JR59 1369 aa23.4■■□□□ 1.34
USP4-212ENST00000486549 TIAM1Q13009 1591 aa23.39■■□□□ 1.33
USP4-212ENST00000486549 AKNAQ7Z591 1439 aa23.38■■□□□ 1.33
USP4-212ENST00000486549 ARHGAP5Q13017 1502 aa23.38■■□□□ 1.33
USP4-212ENST00000486549 EHBP1L1Q8N3D4 1523 aa23.38■■□□□ 1.33
USP4-212ENST00000486549 PREX2Q70Z35 1606 aa23.36■■□□□ 1.33
USP4-212ENST00000486549 CDC42BPAQ5VT25 1732 aa23.36■■□□□ 1.33
USP4-212ENST00000486549 CDC42BPBQ9Y5S2 1711 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms