RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CARMIL1Q5VZK9 1371 aa28.88■■■□□ 2.21
VIM-205ENST00000485947 KIAA0586Q9BVV6 1533 aa28.86■■■□□ 2.21
VIM-205ENST00000485947 PRG4Q92954 1404 aaPredicted RBP28.85■■■□□ 2.21
VIM-205ENST00000485947 RUSC2Q8N2Y8 1516 aa28.84■■■□□ 2.21
VIM-205ENST00000485947 ERCC6L2Q5T890 1561 aa28.84■■■□□ 2.21
VIM-205ENST00000485947 RAPGEF2Q9Y4G8 1499 aa28.67■■■□□ 2.18
VIM-205ENST00000485947 CARMIL2Q6F5E8 1435 aa28.59■■■□□ 2.17
VIM-205ENST00000485947 IQGAP2Q13576 1575 aa28.57■■■□□ 2.16
VIM-205ENST00000485947 NPM1P06748 294 aaKnown RBP eCLIP28.52■■■□□ 2.16
VIM-205ENST00000485947 PTPRGP23470 1445 aa28.5■■■□□ 2.15
VIM-205ENST00000485947 TNIKQ9UKE5 1360 aa28.5■■■□□ 2.15
VIM-205ENST00000485947 KIF13AQ9H1H9 1805 aa28.49■■■□□ 2.15
VIM-205ENST00000485947 PRXQ9BXM0 1461 aa28.48■■■□□ 2.15
VIM-205ENST00000485947 UGGT2Q9NYU1 1516 aa28.45■■■□□ 2.15
VIM-205ENST00000485947 CHIC1Q5VXU3 224 aa28.45■■■□□ 2.14
VIM-205ENST00000485947 EEA1Q15075 1411 aa28.43■■■□□ 2.14
VIM-205ENST00000485947 MAPKBP1O60336 1514 aa28.4■■■□□ 2.14
VIM-205ENST00000485947 DISP1Q96F81 1524 aa28.39■■■□□ 2.14
VIM-205ENST00000485947 ADCY10Q96PN6 1610 aa28.39■■■□□ 2.13
VIM-205ENST00000485947 CSRNP3Q8WYN3 585 aa28.38■■■□□ 2.13
VIM-205ENST00000485947 UHRF1BP1LA0JNW5 1464 aa28.33■■■□□ 2.13
VIM-205ENST00000485947 GOLGA3Q08378 1498 aa28.32■■■□□ 2.12
VIM-205ENST00000485947 ABCC10Q5T3U5 1492 aa28.31■■■□□ 2.12
VIM-205ENST00000485947 CTTNBP2Q8WZ74 1663 aa28.3■■■□□ 2.12
VIM-205ENST00000485947 UACAQ9BZF9 1416 aa28.29■■■□□ 2.12
VIM-205ENST00000485947 ABCC2Q92887 1545 aa28.28■■■□□ 2.12
VIM-205ENST00000485947 KIAA0556O60303 1618 aa28.28■■■□□ 2.12
VIM-205ENST00000485947 FAM69CQ0P6D2 419 aa28.24■■■□□ 2.11
VIM-205ENST00000485947 TTBK1Q5TCY1 1321 aaPredicted RBP28.22■■■□□ 2.11
VIM-205ENST00000485947 KDM4FA0A1W2PPD8 638 aa28.2■■■□□ 2.1
VIM-205ENST00000485947 ILDR1Q86SU0 546 aaPredicted RBP28.19■■■□□ 2.1
VIM-205ENST00000485947 FAM9AQ8IZU1 332 aaPredicted RBP28.18■■■□□ 2.1
VIM-205ENST00000485947 PLB1Q6P1J6 1458 aa28.18■■■□□ 2.1
VIM-205ENST00000485947 DIP2BQ9P265 1576 aa28.17■■■□□ 2.1
VIM-205ENST00000485947 KDM5BQ9UGL1 1544 aa28.16■■■□□ 2.1
VIM-205ENST00000485947 ASXL2Q76L83 1435 aa28.1■■■□□ 2.09
VIM-205ENST00000485947 KDM6BO15054 1643 aa28.06■■■□□ 2.08
VIM-205ENST00000485947 GLI2P10070 1586 aa28.04■■■□□ 2.08
VIM-205ENST00000485947 KIF21BO75037 1637 aa28.03■■■□□ 2.08
VIM-205ENST00000485947 ABCA8O94911 1581 aa28.03■■■□□ 2.08
VIM-205ENST00000485947 SAMD9Q5K651 1589 aa27.99■■■□□ 2.07
VIM-205ENST00000485947 ZCCHC11Q5TAX3 1644 aaKnown RBP27.98■■■□□ 2.07
VIM-205ENST00000485947 EPRSP07814 1512 aaKnown RBP27.94■■■□□ 2.06
VIM-205ENST00000485947 TSPOAP1O95153 1857 aa27.94■■■□□ 2.06
VIM-205ENST00000485947 WDR7Q9Y4E6 1490 aa27.93■■■□□ 2.06
VIM-205ENST00000485947 P3H3Q8IVL6 736 aa27.9■■■□□ 2.06
VIM-205ENST00000485947 EFCAB5A4FU69 1503 aa27.86■■■□□ 2.05
VIM-205ENST00000485947 TEX14Q8IWB6 1497 aa27.83■■■□□ 2.04
VIM-205ENST00000485947 MAP3K4Q9Y6R4 1608 aa27.81■■■□□ 2.04
VIM-205ENST00000485947 UBTFP17480 764 aaKnown RBP27.8■■■□□ 2.04
VIM-205ENST00000485947 ATP10BO94823 1461 aa27.8■■■□□ 2.04
VIM-205ENST00000485947 RAPGEF6Q8TEU7 1601 aa27.78■■■□□ 2.04
VIM-205ENST00000485947 FHOD3Q2V2M9 1422 aa27.75■■■□□ 2.03
VIM-205ENST00000485947 PPRC1Q5VV67 1664 aaKnown RBP27.75■■■□□ 2.03
VIM-205ENST00000485947 RANGAP1P46060 587 aaPredicted RBP27.74■■■□□ 2.03
VIM-205ENST00000485947 ADGRL1O94910 1474 aa27.74■■■□□ 2.03
VIM-205ENST00000485947 MAGI3Q5TCQ9 1506 aa27.72■■■□□ 2.03
VIM-205ENST00000485947 KCNH8Q96L42 1107 aa27.72■■■□□ 2.03
VIM-205ENST00000485947 CD109Q6YHK3 1445 aa27.72■■■□□ 2.03
VIM-205ENST00000485947 CFAP43Q8NDM7 1665 aa27.7■■■□□ 2.02
VIM-205ENST00000485947 NUP153P49790 1475 aaKnown RBP27.7■■■□□ 2.02
VIM-205ENST00000485947 HECW2Q9P2P5 1572 aa27.65■■■□□ 2.02
VIM-205ENST00000485947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.64■■■□□ 2.02
VIM-205ENST00000485947 HNRNPUL2Q1KMD3 747 aaKnown RBP27.64■■■□□ 2.02
VIM-205ENST00000485947 FMN1Q68DA7 1419 aa27.64■■■□□ 2.02
VIM-205ENST00000485947 ARID3CA6NKF2 412 aa27.63■■■□□ 2.01
VIM-205ENST00000485947 PHLDB1Q86UU1 1377 aa27.6■■■□□ 2.01
VIM-205ENST00000485947 PLEKHD1A6NEE1 506 aa27.6■■■□□ 2.01
VIM-205ENST00000485947 ARHGAP35Q9NRY4 1499 aa27.59■■■□□ 2.01
VIM-205ENST00000485947 COL17A1Q9UMD9 1497 aaPredicted RBP27.58■■■□□ 2.01
VIM-205ENST00000485947 ABCA9Q8IUA7 1624 aa27.57■■■□□ 2
VIM-205ENST00000485947 EHMT2Q96KQ7 1210 aa27.56■■■□□ 2
VIM-205ENST00000485947 ARAP3Q8WWN8 1544 aa27.5■■□□□ 1.99
VIM-205ENST00000485947 NEO1Q92859 1461 aa27.47■■□□□ 1.99
VIM-205ENST00000485947 CDK11AQ9UQ88 783 aaPredicted RBP27.47■■□□□ 1.99
VIM-205ENST00000485947 HECW1Q76N89 1606 aa27.46■■□□□ 1.99
VIM-205ENST00000485947 CDK13Q14004 1512 aaKnown RBP27.37■■□□□ 1.97
VIM-205ENST00000485947 ATP1B4Q9UN42 357 aaPredicted RBP27.37■■□□□ 1.97
VIM-205ENST00000485947 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.35■■□□□ 1.976e-21■■■□□ 15.4
VIM-205ENST00000485947 CASKIN1Q8WXD9 1431 aa27.34■■□□□ 1.97
VIM-205ENST00000485947 CLIP1P30622 1438 aa27.33■■□□□ 1.97
VIM-205ENST00000485947 FBXO41Q8TF61 875 aa27.32■■□□□ 1.96
VIM-205ENST00000485947 CCDC18Q5T9S5 1454 aa27.3■■□□□ 1.96
VIM-205ENST00000485947 CFAP74Q9C0B2 1584 aa27.3■■□□□ 1.96
VIM-205ENST00000485947 FANCAO15360 1455 aa27.28■■□□□ 1.96
VIM-205ENST00000485947 TROQ12816 1431 aaPredicted RBP27.28■■□□□ 1.96
VIM-205ENST00000485947 PLCH2O75038 1416 aa27.27■■□□□ 1.96
VIM-205ENST00000485947 AKNAQ7Z591 1439 aa27.27■■□□□ 1.96
VIM-205ENST00000485947 TTC37Q6PGP7 1564 aa27.25■■□□□ 1.95
VIM-205ENST00000485947 FYCO1Q9BQS8 1478 aa27.25■■□□□ 1.95
VIM-205ENST00000485947 DENND4BO75064 1496 aaPredicted RBP27.24■■□□□ 1.95
VIM-205ENST00000485947 RAPGEF3O95398 923 aa27.23■■□□□ 1.95
VIM-205ENST00000485947 LOC105371045A0A1W2PR82 267 aa27.22■■□□□ 1.95
VIM-205ENST00000485947 KIF14Q15058 1648 aa27.2■■□□□ 1.95
VIM-205ENST00000485947 PCF11O94913 1555 aaKnown RBP27.2■■□□□ 1.94
VIM-205ENST00000485947 EFCAB2Q5VUJ9 269 aa27.2■■□□□ 1.94
VIM-205ENST00000485947 FRMPD1Q5SYB0 1578 aa27.14■■□□□ 1.94
VIM-205ENST00000485947 LRRIQ1Q96JM4 1722 aa27.13■■□□□ 1.93
VIM-205ENST00000485947 MAGI2Q86UL8 1455 aa27.13■■□□□ 1.93
VIM-205ENST00000485947 MYO5CQ9NQX4 1742 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms