RNA–Protein interactions for RNA: ENST00000485592.5

SMARCD3-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 820 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-211ENST00000485592 KIF13AQ9H1H9 1805 aa24.32■■□□□ 1.48
SMARCD3-211ENST00000485592 CUL7Q14999 1698 aa24.22■■□□□ 1.47
SMARCD3-211ENST00000485592 NPM1P06748 294 aaKnown RBP eCLIP24.21■■□□□ 1.47
SMARCD3-211ENST00000485592 KIF27Q86VH2 1401 aa24.19■■□□□ 1.46
SMARCD3-211ENST00000485592 KIAA0586Q9BVV6 1533 aa24.19■■□□□ 1.46
SMARCD3-211ENST00000485592 MAPKBP1O60336 1514 aa24.18■■□□□ 1.46
SMARCD3-211ENST00000485592 ABCC10Q5T3U5 1492 aa24.17■■□□□ 1.46
SMARCD3-211ENST00000485592 ADCY10Q96PN6 1610 aa24.17■■□□□ 1.46
SMARCD3-211ENST00000485592 IGF1RP08069 1367 aa24.15■■□□□ 1.46
SMARCD3-211ENST00000485592 FAM69CQ0P6D2 419 aa24.14■■□□□ 1.45
SMARCD3-211ENST00000485592 DIP2BQ9P265 1576 aa24.12■■□□□ 1.45
SMARCD3-211ENST00000485592 CARMIL1Q5VZK9 1371 aa24.03■■□□□ 1.44
SMARCD3-211ENST00000485592 PTPRGP23470 1445 aa24■■□□□ 1.43
SMARCD3-211ENST00000485592 CARMIL2Q6F5E8 1435 aa23.99■■□□□ 1.43
SMARCD3-211ENST00000485592 KDM6BO15054 1643 aa23.99■■□□□ 1.43
SMARCD3-211ENST00000485592 TSPOAP1O95153 1857 aa23.98■■□□□ 1.43
SMARCD3-211ENST00000485592 IQGAP2Q13576 1575 aa23.96■■□□□ 1.43
SMARCD3-211ENST00000485592 TNIKQ9UKE5 1360 aa23.94■■□□□ 1.42
SMARCD3-211ENST00000485592 TTBK1Q5TCY1 1321 aaPredicted RBP23.93■■□□□ 1.42
SMARCD3-211ENST00000485592 ABCC2Q92887 1545 aa23.9■■□□□ 1.42
SMARCD3-211ENST00000485592 UHRF1BP1LA0JNW5 1464 aa23.84■■□□□ 1.41
SMARCD3-211ENST00000485592 PLB1Q6P1J6 1458 aa23.84■■□□□ 1.41
SMARCD3-211ENST00000485592 ASXL2Q76L83 1435 aa23.84■■□□□ 1.41
SMARCD3-211ENST00000485592 DISP1Q96F81 1524 aa23.81■■□□□ 1.4
SMARCD3-211ENST00000485592 UACAQ9BZF9 1416 aa23.81■■□□□ 1.4
SMARCD3-211ENST00000485592 GLI2P10070 1586 aa23.81■■□□□ 1.4
SMARCD3-211ENST00000485592 RAPGEF2Q9Y4G8 1499 aa23.81■■□□□ 1.4
SMARCD3-211ENST00000485592 UGGT2Q9NYU1 1516 aa23.78■■□□□ 1.4
SMARCD3-211ENST00000485592 PPRC1Q5VV67 1664 aaKnown RBP23.76■■□□□ 1.39
SMARCD3-211ENST00000485592 KIAA0556O60303 1618 aa23.74■■□□□ 1.39
SMARCD3-211ENST00000485592 KDM4FA0A1W2PPD8 638 aa23.73■■□□□ 1.39
SMARCD3-211ENST00000485592 KDM5BQ9UGL1 1544 aa23.73■■□□□ 1.39
SMARCD3-211ENST00000485592 ZCCHC11Q5TAX3 1644 aaKnown RBP23.71■■□□□ 1.39
SMARCD3-211ENST00000485592 EPRSP07814 1512 aaKnown RBP23.69■■□□□ 1.38
SMARCD3-211ENST00000485592 CTTNBP2Q8WZ74 1663 aa23.68■■□□□ 1.38
SMARCD3-211ENST00000485592 MAP3K4Q9Y6R4 1608 aa23.68■■□□□ 1.38
SMARCD3-211ENST00000485592 TEX14Q8IWB6 1497 aa23.65■■□□□ 1.38
SMARCD3-211ENST00000485592 GOLGA3Q08378 1498 aa23.59■■□□□ 1.37
SMARCD3-211ENST00000485592 WDR7Q9Y4E6 1490 aa23.59■■□□□ 1.37
SMARCD3-211ENST00000485592 ADGRL1O94910 1474 aa23.56■■□□□ 1.36
SMARCD3-211ENST00000485592 COL17A1Q9UMD9 1497 aaPredicted RBP23.56■■□□□ 1.36
SMARCD3-211ENST00000485592 ABCA8O94911 1581 aa23.51■■□□□ 1.35
SMARCD3-211ENST00000485592 CFAP43Q8NDM7 1665 aa23.51■■□□□ 1.35
SMARCD3-211ENST00000485592 PRXQ9BXM0 1461 aa23.48■■□□□ 1.35
SMARCD3-211ENST00000485592 MAGI3Q5TCQ9 1506 aa23.45■■□□□ 1.34
SMARCD3-211ENST00000485592 CD109Q6YHK3 1445 aa23.45■■□□□ 1.34
SMARCD3-211ENST00000485592 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
SMARCD3-211ENST00000485592 KCNH8Q96L42 1107 aa23.42■■□□□ 1.34
SMARCD3-211ENST00000485592 HECW2Q9P2P5 1572 aa23.31■■□□□ 1.32
SMARCD3-211ENST00000485592 P3H3Q8IVL6 736 aa23.3■■□□□ 1.32
SMARCD3-211ENST00000485592 ARID3CA6NKF2 412 aa23.29■■□□□ 1.32
SMARCD3-211ENST00000485592 ATP10BO94823 1461 aa23.29■■□□□ 1.32
SMARCD3-211ENST00000485592 SAMD9Q5K651 1589 aa23.28■■□□□ 1.32
SMARCD3-211ENST00000485592 KIF21BO75037 1637 aa23.27■■□□□ 1.32
SMARCD3-211ENST00000485592 ARAP3Q8WWN8 1544 aa23.27■■□□□ 1.32
SMARCD3-211ENST00000485592 ABCA9Q8IUA7 1624 aa23.26■■□□□ 1.31
SMARCD3-211ENST00000485592 RAPGEF6Q8TEU7 1601 aa23.26■■□□□ 1.31
SMARCD3-211ENST00000485592 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
SMARCD3-211ENST00000485592 ILDR1Q86SU0 546 aaPredicted RBP23.22■■□□□ 1.31
SMARCD3-211ENST00000485592 PHLDB1Q86UU1 1377 aa23.21■■□□□ 1.31
SMARCD3-211ENST00000485592 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.18■■□□□ 1.3
SMARCD3-211ENST00000485592 HNRNPUL2Q1KMD3 747 aaKnown RBP23.18■■□□□ 1.3
SMARCD3-211ENST00000485592 EEA1Q15075 1411 aa23.16■■□□□ 1.3
SMARCD3-211ENST00000485592 NEO1Q92859 1461 aa23.16■■□□□ 1.3
SMARCD3-211ENST00000485592 NUP153P49790 1475 aaKnown RBP23.12■■□□□ 1.29
SMARCD3-211ENST00000485592 FHOD3Q2V2M9 1422 aa23.1■■□□□ 1.29
SMARCD3-211ENST00000485592 RANGAP1P46060 587 aaPredicted RBP23.1■■□□□ 1.29
SMARCD3-211ENST00000485592 RAPGEF3O95398 923 aa23.09■■□□□ 1.29
SMARCD3-211ENST00000485592 ADAMTSL3P82987 1691 aa23.08■■□□□ 1.29
SMARCD3-211ENST00000485592 FRMPD1Q5SYB0 1578 aa23.06■■□□□ 1.28
SMARCD3-211ENST00000485592 PTPRMP28827 1452 aa23.04■■□□□ 1.28
SMARCD3-211ENST00000485592 EFCAB5A4FU69 1503 aa23.03■■□□□ 1.28
SMARCD3-211ENST00000485592 BCORL1Q5H9F3 1711 aa23.03■■□□□ 1.28
SMARCD3-211ENST00000485592 CFAP74Q9C0B2 1584 aa23.03■■□□□ 1.28
SMARCD3-211ENST00000485592 PLEKHD1A6NEE1 506 aa23.03■■□□□ 1.28
SMARCD3-211ENST00000485592 ARID4BQ4LE39 1312 aaPredicted RBP23■■□□□ 1.27
SMARCD3-211ENST00000485592 ARHGEF40Q8TER5 1519 aa22.99■■□□□ 1.27
SMARCD3-211ENST00000485592 DENND4BO75064 1496 aaPredicted RBP22.98■■□□□ 1.27
SMARCD3-211ENST00000485592 RICTORQ6R327 1708 aa22.98■■□□□ 1.27
SMARCD3-211ENST00000485592 MADDQ8WXG6 1647 aa22.97■■□□□ 1.27
SMARCD3-211ENST00000485592 FANCAO15360 1455 aa22.97■■□□□ 1.27
SMARCD3-211ENST00000485592 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.97■■□□□ 1.27
SMARCD3-211ENST00000485592 AKNAQ7Z591 1439 aa22.96■■□□□ 1.27
SMARCD3-211ENST00000485592 TTC37Q6PGP7 1564 aa22.94■■□□□ 1.26
SMARCD3-211ENST00000485592 RIMS1Q86UR5 1692 aaKnown RBP22.9■■□□□ 1.26
SMARCD3-211ENST00000485592 ZMYM4Q5VZL5 1548 aa22.9■■□□□ 1.26
SMARCD3-211ENST00000485592 PCF11O94913 1555 aaKnown RBP22.89■■□□□ 1.26
SMARCD3-211ENST00000485592 CDK13Q14004 1512 aaKnown RBP22.89■■□□□ 1.26
SMARCD3-211ENST00000485592 ZFYVE16Q7Z3T8 1539 aa22.87■■□□□ 1.25
SMARCD3-211ENST00000485592 POGZQ7Z3K3 1410 aa22.87■■□□□ 1.25
SMARCD3-211ENST00000485592 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
SMARCD3-211ENST00000485592 MAGI2Q86UL8 1455 aa22.84■■□□□ 1.25
SMARCD3-211ENST00000485592 LMTK3Q96Q04 1460 aa22.84■■□□□ 1.25
SMARCD3-211ENST00000485592 FMN1Q68DA7 1419 aa22.82■■□□□ 1.24
SMARCD3-211ENST00000485592 UBTFP17480 764 aaKnown RBP22.81■■□□□ 1.24
SMARCD3-211ENST00000485592 FBXO41Q8TF61 875 aa22.81■■□□□ 1.24
SMARCD3-211ENST00000485592 PLCH2O75038 1416 aa22.81■■□□□ 1.24
SMARCD3-211ENST00000485592 YEATS2Q9ULM3 1422 aa22.81■■□□□ 1.24
SMARCD3-211ENST00000485592 MYO5CQ9NQX4 1742 aa22.8■■□□□ 1.24
SMARCD3-211ENST00000485592 ATP1B4Q9UN42 357 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms