RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 ADAMTS12P58397 1594 aa19.06■□□□□ 0.64
HMGN1-215ENST00000485550 SHROOM2Q13796 1616 aa19.03■□□□□ 0.64
HMGN1-215ENST00000485550 NUP160Q12769 1436 aa19.02■□□□□ 0.64
HMGN1-215ENST00000485550 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.62
HMGN1-215ENST00000485550 FHAD1B1AJZ9 1412 aa18.92■□□□□ 0.62
HMGN1-215ENST00000485550 BIVM-ERCC5R4GMW8 1640 aa18.91■□□□□ 0.62
HMGN1-215ENST00000485550 PRG4Q92954 1404 aaPredicted RBP18.9■□□□□ 0.62
HMGN1-215ENST00000485550 TOP2BQ02880 1626 aa18.88■□□□□ 0.61
HMGN1-215ENST00000485550 TSPOAP1O95153 1857 aa18.87■□□□□ 0.61
HMGN1-215ENST00000485550 ERICH3Q5RHP9 1530 aa18.86■□□□□ 0.61
HMGN1-215ENST00000485550 FAM69CQ0P6D2 419 aa18.86■□□□□ 0.61
HMGN1-215ENST00000485550 ABCC10Q5T3U5 1492 aa18.84■□□□□ 0.61
HMGN1-215ENST00000485550 JPH4Q96JJ6 628 aa18.83■□□□□ 0.6
HMGN1-215ENST00000485550 DIP2BQ9P265 1576 aa18.82■□□□□ 0.6
HMGN1-215ENST00000485550 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
HMGN1-215ENST00000485550 KDM6BO15054 1643 aa18.79■□□□□ 0.6
HMGN1-215ENST00000485550 ADCY10Q96PN6 1610 aa18.79■□□□□ 0.6
HMGN1-215ENST00000485550 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
HMGN1-215ENST00000485550 NPM1P06748 294 aaKnown RBP eCLIP18.78■□□□□ 0.6
HMGN1-215ENST00000485550 KDM4FA0A1W2PPD8 638 aa18.77■□□□□ 0.6
HMGN1-215ENST00000485550 ILDR1Q86SU0 546 aaPredicted RBP18.68■□□□□ 0.58
HMGN1-215ENST00000485550 KIAA0586Q9BVV6 1533 aa18.6■□□□□ 0.57
HMGN1-215ENST00000485550 PPRC1Q5VV67 1664 aaKnown RBP18.59■□□□□ 0.57
HMGN1-215ENST00000485550 TTBK1Q5TCY1 1321 aaPredicted RBP18.58■□□□□ 0.57
HMGN1-215ENST00000485550 CUL7Q14999 1698 aa18.55■□□□□ 0.56
HMGN1-215ENST00000485550 ADGRL1O94910 1474 aa18.52■□□□□ 0.56
HMGN1-215ENST00000485550 PTPRGP23470 1445 aa18.52■□□□□ 0.56
HMGN1-215ENST00000485550 IGF1RP08069 1367 aa18.5■□□□□ 0.55
HMGN1-215ENST00000485550 ABCC2Q92887 1545 aa18.49■□□□□ 0.55
HMGN1-215ENST00000485550 ASXL2Q76L83 1435 aa18.49■□□□□ 0.55
HMGN1-215ENST00000485550 GLI2P10070 1586 aa18.47■□□□□ 0.55
HMGN1-215ENST00000485550 PLB1Q6P1J6 1458 aa18.46■□□□□ 0.54
HMGN1-215ENST00000485550 KIF27Q86VH2 1401 aa18.45■□□□□ 0.54
HMGN1-215ENST00000485550 TNIKQ9UKE5 1360 aa18.44■□□□□ 0.54
HMGN1-215ENST00000485550 HECW2Q9P2P5 1572 aa18.44■□□□□ 0.54
HMGN1-215ENST00000485550 COL17A1Q9UMD9 1497 aaPredicted RBP18.43■□□□□ 0.54
HMGN1-215ENST00000485550 CARMIL2Q6F5E8 1435 aa18.42■□□□□ 0.54
HMGN1-215ENST00000485550 IQGAP2Q13576 1575 aa18.41■□□□□ 0.54
HMGN1-215ENST00000485550 MAP3K4Q9Y6R4 1608 aa18.41■□□□□ 0.54
HMGN1-215ENST00000485550 CARMIL1Q5VZK9 1371 aa18.39■□□□□ 0.53
HMGN1-215ENST00000485550 UHRF1BP1LA0JNW5 1464 aa18.38■□□□□ 0.53
HMGN1-215ENST00000485550 EPRSP07814 1512 aaKnown RBP18.38■□□□□ 0.53
HMGN1-215ENST00000485550 UACAQ9BZF9 1416 aa18.37■□□□□ 0.53
HMGN1-215ENST00000485550 ZCCHC11Q5TAX3 1644 aaKnown RBP18.37■□□□□ 0.53
HMGN1-215ENST00000485550 DISP1Q96F81 1524 aa18.33■□□□□ 0.53
HMGN1-215ENST00000485550 TEX14Q8IWB6 1497 aa18.33■□□□□ 0.53
HMGN1-215ENST00000485550 KDM5BQ9UGL1 1544 aa18.32■□□□□ 0.52
HMGN1-215ENST00000485550 KIAA0556O60303 1618 aa18.26■□□□□ 0.51
HMGN1-215ENST00000485550 UGGT2Q9NYU1 1516 aa18.23■□□□□ 0.51
HMGN1-215ENST00000485550 WDR7Q9Y4E6 1490 aa18.22■□□□□ 0.51
HMGN1-215ENST00000485550 KIF21BO75037 1637 aa18.22■□□□□ 0.51
HMGN1-215ENST00000485550 CFAP43Q8NDM7 1665 aa18.22■□□□□ 0.51
HMGN1-215ENST00000485550 RAPGEF2Q9Y4G8 1499 aa18.17■□□□□ 0.5
HMGN1-215ENST00000485550 CD109Q6YHK3 1445 aa18.16■□□□□ 0.5
HMGN1-215ENST00000485550 CTTNBP2Q8WZ74 1663 aa18.16■□□□□ 0.5
HMGN1-215ENST00000485550 KCNH8Q96L42 1107 aa18.16■□□□□ 0.5
HMGN1-215ENST00000485550 MAGI3Q5TCQ9 1506 aa18.15■□□□□ 0.5
HMGN1-215ENST00000485550 FBXO41Q8TF61 875 aa18.11■□□□□ 0.49
HMGN1-215ENST00000485550 ABCA8O94911 1581 aa18.09■□□□□ 0.49
HMGN1-215ENST00000485550 ADAMTSL3P82987 1691 aa18.05■□□□□ 0.48
HMGN1-215ENST00000485550 ARAP3Q8WWN8 1544 aa18.03■□□□□ 0.48
HMGN1-215ENST00000485550 PTPRMP28827 1452 aa18.02■□□□□ 0.48
HMGN1-215ENST00000485550 GOLGA3Q08378 1498 aa18.02■□□□□ 0.48
HMGN1-215ENST00000485550 ARID3CA6NKF2 412 aa18.01■□□□□ 0.47
HMGN1-215ENST00000485550 BCORL1Q5H9F3 1711 aa17.98■□□□□ 0.47
HMGN1-215ENST00000485550 MADDQ8WXG6 1647 aa17.98■□□□□ 0.47
HMGN1-215ENST00000485550 MAPK8IP2Q13387 824 aaPredicted RBP17.97■□□□□ 0.47
HMGN1-215ENST00000485550 ABCA9Q8IUA7 1624 aa17.97■□□□□ 0.47
HMGN1-215ENST00000485550 PCF11O94913 1555 aaKnown RBP17.95■□□□□ 0.46
HMGN1-215ENST00000485550 RAPGEF3O95398 923 aa17.94■□□□□ 0.46
HMGN1-215ENST00000485550 ATP10BO94823 1461 aa17.93■□□□□ 0.46
HMGN1-215ENST00000485550 RIMS1Q86UR5 1692 aaKnown RBP17.93■□□□□ 0.46
HMGN1-215ENST00000485550 P3H3Q8IVL6 736 aa17.91■□□□□ 0.46
HMGN1-215ENST00000485550 ARID4BQ4LE39 1312 aaPredicted RBP17.91■□□□□ 0.46
HMGN1-215ENST00000485550 FRMPD1Q5SYB0 1578 aa17.91■□□□□ 0.46
HMGN1-215ENST00000485550 LMTK3Q96Q04 1460 aa17.9■□□□□ 0.46
HMGN1-215ENST00000485550 PHLDB1Q86UU1 1377 aa17.89■□□□□ 0.45
HMGN1-215ENST00000485550 NEO1Q92859 1461 aa17.87■□□□□ 0.45
HMGN1-215ENST00000485550 RAPGEF6Q8TEU7 1601 aa17.85■□□□□ 0.45
HMGN1-215ENST00000485550 PRXQ9BXM0 1461 aa17.85■□□□□ 0.45
HMGN1-215ENST00000485550 FAM9AQ8IZU1 332 aaPredicted RBP17.84■□□□□ 0.45
HMGN1-215ENST00000485550 RICTORQ6R327 1708 aa17.84■□□□□ 0.45
HMGN1-215ENST00000485550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.83■□□□□ 0.44
HMGN1-215ENST00000485550 HSPA2P54652 639 aa17.83■□□□□ 0.44
HMGN1-215ENST00000485550 HNRNPUL2Q1KMD3 747 aaKnown RBP17.83■□□□□ 0.44
HMGN1-215ENST00000485550 ARHGEF40Q8TER5 1519 aa17.82■□□□□ 0.44
HMGN1-215ENST00000485550 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
HMGN1-215ENST00000485550 DMRT2Q9Y5R5 561 aa17.81■□□□□ 0.44
HMGN1-215ENST00000485550 SIGLEC1Q9BZZ2 1709 aa17.8■□□□□ 0.44
HMGN1-215ENST00000485550 SAMD9Q5K651 1589 aa17.79■□□□□ 0.44
HMGN1-215ENST00000485550 FER1L4A9Z1Z3 1794 aa17.76■□□□□ 0.43
HMGN1-215ENST00000485550 DENND4BO75064 1496 aaPredicted RBP17.75■□□□□ 0.43
HMGN1-215ENST00000485550 RANGAP1P46060 587 aaPredicted RBP17.75■□□□□ 0.43
HMGN1-215ENST00000485550 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
HMGN1-215ENST00000485550 CERKQ8TCT0 537 aa17.74■□□□□ 0.43
HMGN1-215ENST00000485550 NUP153P49790 1475 aaKnown RBP17.74■□□□□ 0.43
HMGN1-215ENST00000485550 FANCAO15360 1455 aa17.73■□□□□ 0.43
HMGN1-215ENST00000485550 CFAP74Q9C0B2 1584 aa17.73■□□□□ 0.43
HMGN1-215ENST00000485550 AKNAQ7Z591 1439 aa17.72■□□□□ 0.43
HMGN1-215ENST00000485550 POGZQ7Z3K3 1410 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms