RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 JPH4Q96JJ6 628 aa28.39■■■□□ 2.14
TRIM54-203ENST00000485306 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
TRIM54-203ENST00000485306 PRG4Q92954 1404 aaPredicted RBP28.33■■■□□ 2.13
TRIM54-203ENST00000485306 CARMIL1Q5VZK9 1371 aa28.31■■■□□ 2.12
TRIM54-203ENST00000485306 RUSC2Q8N2Y8 1516 aa28.29■■■□□ 2.12
TRIM54-203ENST00000485306 KIAA0586Q9BVV6 1533 aa28.26■■■□□ 2.11
TRIM54-203ENST00000485306 RAPGEF2Q9Y4G8 1499 aa28.09■■■□□ 2.09
TRIM54-203ENST00000485306 NPM1P06748 294 aaKnown RBP eCLIP28.04■■■□□ 2.08
TRIM54-203ENST00000485306 IQGAP2Q13576 1575 aa28.03■■■□□ 2.08
TRIM54-203ENST00000485306 CARMIL2Q6F5E8 1435 aa28.02■■■□□ 2.08
TRIM54-203ENST00000485306 PTPRGP23470 1445 aa27.96■■■□□ 2.07
TRIM54-203ENST00000485306 TNIKQ9UKE5 1360 aa27.94■■■□□ 2.06
TRIM54-203ENST00000485306 TTBK1Q5TCY1 1321 aaPredicted RBP27.92■■■□□ 2.06
TRIM54-203ENST00000485306 ADCY10Q96PN6 1610 aa27.89■■■□□ 2.06
TRIM54-203ENST00000485306 UGGT2Q9NYU1 1516 aa27.85■■■□□ 2.05
TRIM54-203ENST00000485306 PRXQ9BXM0 1461 aa27.84■■■□□ 2.05
TRIM54-203ENST00000485306 DISP1Q96F81 1524 aa27.83■■■□□ 2.05
TRIM54-203ENST00000485306 MAPKBP1O60336 1514 aa27.82■■■□□ 2.04
TRIM54-203ENST00000485306 CTTNBP2Q8WZ74 1663 aa27.82■■■□□ 2.04
TRIM54-203ENST00000485306 CSRNP3Q8WYN3 585 aa27.82■■■□□ 2.04
TRIM54-203ENST00000485306 KIF13AQ9H1H9 1805 aa27.8■■■□□ 2.04
TRIM54-203ENST00000485306 FAM69CQ0P6D2 419 aa27.79■■■□□ 2.04
TRIM54-203ENST00000485306 ABCC10Q5T3U5 1492 aa27.76■■■□□ 2.04
TRIM54-203ENST00000485306 EEA1Q15075 1411 aa27.75■■■□□ 2.03
TRIM54-203ENST00000485306 UACAQ9BZF9 1416 aa27.74■■■□□ 2.03
TRIM54-203ENST00000485306 KIAA0556O60303 1618 aa27.74■■■□□ 2.03
TRIM54-203ENST00000485306 GOLGA3Q08378 1498 aa27.73■■■□□ 2.03
TRIM54-203ENST00000485306 ABCC2Q92887 1545 aa27.72■■■□□ 2.03
TRIM54-203ENST00000485306 UHRF1BP1LA0JNW5 1464 aa27.71■■■□□ 2.03
TRIM54-203ENST00000485306 DIP2BQ9P265 1576 aa27.67■■■□□ 2.02
TRIM54-203ENST00000485306 FAM9AQ8IZU1 332 aaPredicted RBP27.65■■■□□ 2.02
TRIM54-203ENST00000485306 PLB1Q6P1J6 1458 aa27.62■■■□□ 2.01
TRIM54-203ENST00000485306 ASXL2Q76L83 1435 aa27.59■■■□□ 2.01
TRIM54-203ENST00000485306 KDM5BQ9UGL1 1544 aa27.57■■■□□ 2
TRIM54-203ENST00000485306 TSPOAP1O95153 1857 aa27.51■■□□□ 1.99
TRIM54-203ENST00000485306 ZCCHC11Q5TAX3 1644 aaKnown RBP27.51■■□□□ 1.99
TRIM54-203ENST00000485306 P3H3Q8IVL6 736 aa27.5■■□□□ 1.99
TRIM54-203ENST00000485306 GLI2P10070 1586 aa27.48■■□□□ 1.99
TRIM54-203ENST00000485306 ABCA8O94911 1581 aa27.47■■□□□ 1.99
TRIM54-203ENST00000485306 KIF21BO75037 1637 aa27.44■■□□□ 1.98
TRIM54-203ENST00000485306 EPRSP07814 1512 aaKnown RBP27.42■■□□□ 1.98
TRIM54-203ENST00000485306 SAMD9Q5K651 1589 aa27.41■■□□□ 1.98
TRIM54-203ENST00000485306 RANGAP1P46060 587 aaPredicted RBP27.41■■□□□ 1.98
TRIM54-203ENST00000485306 WDR7Q9Y4E6 1490 aa27.38■■□□□ 1.97
TRIM54-203ENST00000485306 KDM6BO15054 1643 aa27.38■■□□□ 1.97
TRIM54-203ENST00000485306 UBTFP17480 764 aaKnown RBP27.33■■□□□ 1.97
TRIM54-203ENST00000485306 KCNH8Q96L42 1107 aa27.32■■□□□ 1.96
TRIM54-203ENST00000485306 MAP3K4Q9Y6R4 1608 aa27.31■■□□□ 1.96
TRIM54-203ENST00000485306 PPRC1Q5VV67 1664 aaKnown RBP27.3■■□□□ 1.96
TRIM54-203ENST00000485306 EHMT2Q96KQ7 1210 aa27.29■■□□□ 1.96
TRIM54-203ENST00000485306 TEX14Q8IWB6 1497 aa27.29■■□□□ 1.96
TRIM54-203ENST00000485306 ARID3CA6NKF2 412 aa27.28■■□□□ 1.96
TRIM54-203ENST00000485306 RAPGEF6Q8TEU7 1601 aa27.27■■□□□ 1.96
TRIM54-203ENST00000485306 ATP10BO94823 1461 aa27.26■■□□□ 1.95
TRIM54-203ENST00000485306 EFCAB5A4FU69 1503 aa27.26■■□□□ 1.95
TRIM54-203ENST00000485306 FHOD3Q2V2M9 1422 aa27.25■■□□□ 1.95
TRIM54-203ENST00000485306 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.24■■□□□ 1.95
TRIM54-203ENST00000485306 HNRNPUL2Q1KMD3 747 aaKnown RBP27.24■■□□□ 1.95
TRIM54-203ENST00000485306 CD109Q6YHK3 1445 aa27.21■■□□□ 1.95
TRIM54-203ENST00000485306 CFAP43Q8NDM7 1665 aa27.21■■□□□ 1.95
TRIM54-203ENST00000485306 MAGI3Q5TCQ9 1506 aa27.15■■□□□ 1.94
TRIM54-203ENST00000485306 NUP153P49790 1475 aaKnown RBP27.13■■□□□ 1.93
TRIM54-203ENST00000485306 PLEKHD1A6NEE1 506 aa27.1■■□□□ 1.93
TRIM54-203ENST00000485306 COL17A1Q9UMD9 1497 aaPredicted RBP27.09■■□□□ 1.93
TRIM54-203ENST00000485306 FMN1Q68DA7 1419 aa27.05■■□□□ 1.92
TRIM54-203ENST00000485306 ABCA9Q8IUA7 1624 aa27.05■■□□□ 1.92
TRIM54-203ENST00000485306 ARHGAP35Q9NRY4 1499 aa27.03■■□□□ 1.92
TRIM54-203ENST00000485306 ATP1B4Q9UN42 357 aaPredicted RBP27.01■■□□□ 1.91
TRIM54-203ENST00000485306 PHLDB1Q86UU1 1377 aa26.98■■□□□ 1.91
TRIM54-203ENST00000485306 KDM4FA0A1W2PPD8 638 aa26.94■■□□□ 1.9
TRIM54-203ENST00000485306 ARAP3Q8WWN8 1544 aa26.93■■□□□ 1.9
TRIM54-203ENST00000485306 HECW1Q76N89 1606 aa26.93■■□□□ 1.9
TRIM54-203ENST00000485306 CDK11AQ9UQ88 783 aaPredicted RBP26.92■■□□□ 1.9
TRIM54-203ENST00000485306 CDK13Q14004 1512 aaKnown RBP26.9■■□□□ 1.9
TRIM54-203ENST00000485306 NEO1Q92859 1461 aa26.9■■□□□ 1.9
TRIM54-203ENST00000485306 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.84■■□□□ 1.89
TRIM54-203ENST00000485306 ADGRL1O94910 1474 aa26.81■■□□□ 1.88
TRIM54-203ENST00000485306 RAPGEF3O95398 923 aa26.8■■□□□ 1.88
TRIM54-203ENST00000485306 CFAP74Q9C0B2 1584 aa26.78■■□□□ 1.88
TRIM54-203ENST00000485306 FANCAO15360 1455 aa26.77■■□□□ 1.88
TRIM54-203ENST00000485306 CLIP1P30622 1438 aa26.77■■□□□ 1.88
TRIM54-203ENST00000485306 TTC37Q6PGP7 1564 aa26.76■■□□□ 1.87
TRIM54-203ENST00000485306 CASKIN1Q8WXD9 1431 aa26.76■■□□□ 1.87
TRIM54-203ENST00000485306 AKNAQ7Z591 1439 aa26.75■■□□□ 1.87
TRIM54-203ENST00000485306 PLCH2O75038 1416 aa26.72■■□□□ 1.87
TRIM54-203ENST00000485306 TROQ12816 1431 aaPredicted RBP26.72■■□□□ 1.87
TRIM54-203ENST00000485306 DENND4BO75064 1496 aaPredicted RBP26.71■■□□□ 1.87
TRIM54-203ENST00000485306 CCDC18Q5T9S5 1454 aa26.71■■□□□ 1.87
TRIM54-203ENST00000485306 LRRIQ1Q96JM4 1722 aa26.7■■□□□ 1.87
TRIM54-203ENST00000485306 PCF11O94913 1555 aaKnown RBP26.69■■□□□ 1.86
TRIM54-203ENST00000485306 KIF14Q15058 1648 aa26.68■■□□□ 1.86
TRIM54-203ENST00000485306 EFCAB2Q5VUJ9 269 aa26.68■■□□□ 1.86
TRIM54-203ENST00000485306 MYO5CQ9NQX4 1742 aa26.66■■□□□ 1.86
TRIM54-203ENST00000485306 FYCO1Q9BQS8 1478 aa26.66■■□□□ 1.86
TRIM54-203ENST00000485306 FRMPD1Q5SYB0 1578 aa26.65■■□□□ 1.86
TRIM54-203ENST00000485306 RICTORQ6R327 1708 aa26.63■■□□□ 1.85
TRIM54-203ENST00000485306 CEP162Q5TB80 1403 aa26.61■■□□□ 1.85
TRIM54-203ENST00000485306 SCAPERQ9BY12 1400 aa26.6■■□□□ 1.85
TRIM54-203ENST00000485306 LOC105371045A0A1W2PR82 267 aa26.59■■□□□ 1.85
TRIM54-203ENST00000485306 ARID4BQ4LE39 1312 aaPredicted RBP26.58■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms