RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SP7Q8TDD2 431 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-210ENST00000485247 NESP48681 1621 aa11.11□□□□□ -0.63
PTPN4-210ENST00000485247 MNX1P50219 401 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-210ENST00000485247 NCAPD3P42695 1498 aa11.09□□□□□ -0.63
PTPN4-210ENST00000485247 THOC2Q8NI27 1593 aaKnown RBP11.03□□□□□ -0.64
PTPN4-210ENST00000485247 CD44P16070 742 aaKnown RBP11.03□□□□□ -0.64
PTPN4-210ENST00000485247 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
PTPN4-210ENST00000485247 MIER1Q8N108 512 aa11□□□□□ -0.65
PTPN4-210ENST00000485247 SMARCA2P51531 1590 aa10.98□□□□□ -0.65
PTPN4-210ENST00000485247 FBXO3Q9UK99 471 aa10.96□□□□□ -0.65
PTPN4-210ENST00000485247 NPM1P06748 294 aaKnown RBP eCLIP10.95□□□□□ -0.66
PTPN4-210ENST00000485247 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
PTPN4-210ENST00000485247 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
PTPN4-210ENST00000485247 ZRANB1Q9UGI0 708 aa10.92□□□□□ -0.66
PTPN4-210ENST00000485247 KIF21AQ7Z4S6 1674 aa10.9□□□□□ -0.66
PTPN4-210ENST00000485247 GABBR2O75899 941 aa10.9□□□□□ -0.66
PTPN4-210ENST00000485247 PLEKHG5O94827 1062 aa10.9□□□□□ -0.66
PTPN4-210ENST00000485247 LAMC3Q9Y6N6 1575 aa10.89□□□□□ -0.67
PTPN4-210ENST00000485247 VASPP50552 380 aaPredicted RBP10.88□□□□□ -0.67
PTPN4-210ENST00000485247 ZNF579Q8NAF0 562 aaKnown RBP10.88□□□□□ -0.67
PTPN4-210ENST00000485247 PDS5BQ9NTI5 1447 aa10.88□□□□□ -0.67
PTPN4-210ENST00000485247 BAZ1BQ9UIG0 1483 aaKnown RBP10.87□□□□□ -0.67
PTPN4-210ENST00000485247 BAZ1AQ9NRL2 1556 aaPredicted RBP10.86□□□□□ -0.67
PTPN4-210ENST00000485247 SMARCA4P51532 1647 aa10.84□□□□□ -0.67
PTPN4-210ENST00000485247 RASEFQ8IZ41 740 aa10.84□□□□□ -0.67
PTPN4-210ENST00000485247 PAK3O75914 559 aaPredicted RBP10.83□□□□□ -0.68
PTPN4-210ENST00000485247 PHF12Q96QT6 1004 aa10.83□□□□□ -0.68
PTPN4-210ENST00000485247 TSPYL2Q9H2G4 693 aaPredicted RBP10.82□□□□□ -0.68
PTPN4-210ENST00000485247 MRC2Q9UBG0 1479 aa10.81□□□□□ -0.68
PTPN4-210ENST00000485247 NUBP1P53384 320 aa10.81□□□□□ -0.68
PTPN4-210ENST00000485247 ZBTB47Q9UFB7 747 aaPredicted RBP10.81□□□□□ -0.68
PTPN4-210ENST00000485247 WDR62O43379 1518 aa10.79□□□□□ -0.68
PTPN4-210ENST00000485247 CCDC61Q9Y6R9 512 aa10.78□□□□□ -0.68
PTPN4-210ENST00000485247 GALR2O43603 387 aaPredicted RBP10.75□□□□□ -0.69
PTPN4-210ENST00000485247 CLCN6P51797 869 aa10.75□□□□□ -0.69
PTPN4-210ENST00000485247 RIMBP3CA6NJZ7 1639 aa10.75□□□□□ -0.69
PTPN4-210ENST00000485247 RIMBP3BA6NNM3 1639 aa10.75□□□□□ -0.69
PTPN4-210ENST00000485247 RIMBP3Q9UFD9 1639 aa10.75□□□□□ -0.69
PTPN4-210ENST00000485247 CADPSQ9ULU8 1353 aa10.75□□□□□ -0.69
PTPN4-210ENST00000485247 IFNLR1Q8IU57 520 aaPredicted RBP10.74□□□□□ -0.69
PTPN4-210ENST00000485247 POTEIP0CG38 1075 aa10.72□□□□□ -0.69
PTPN4-210ENST00000485247 KLHL34Q8N239 644 aa10.71□□□□□ -0.69
PTPN4-210ENST00000485247 PEG3Q9GZU2 1588 aa10.71□□□□□ -0.69
PTPN4-210ENST00000485247 CYB5RLQ6IPT4 315 aa10.7□□□□□ -0.7
PTPN4-210ENST00000485247 MS4A3Q96HJ5 214 aa10.69□□□□□ -0.7
PTPN4-210ENST00000485247 KIF12Q96FN5 646 aa10.68□□□□□ -0.7
PTPN4-210ENST00000485247 ARHGEF11O15085 1522 aa10.68□□□□□ -0.7
PTPN4-210ENST00000485247 CEP164Q9UPV0 1460 aa10.68□□□□□ -0.7
PTPN4-210ENST00000485247 FAM212AQ96EL1 285 aa10.67□□□□□ -0.7
PTPN4-210ENST00000485247 MAP3K13O43283 966 aa10.64□□□□□ -0.71
PTPN4-210ENST00000485247 MROH2BQ7Z745 1585 aa10.64□□□□□ -0.71
PTPN4-210ENST00000485247 FANCD2Q9BXW9 1451 aa10.63□□□□□ -0.71
PTPN4-210ENST00000485247 DCAF8Q5TAQ9 597 aa10.62□□□□□ -0.71
PTPN4-210ENST00000485247 DCBLD2Q96PD2 775 aa10.62□□□□□ -0.71
PTPN4-210ENST00000485247 SPOCK2Q92563 424 aa10.6□□□□□ -0.71
PTPN4-210ENST00000485247 TRPC6Q9Y210 931 aa10.6□□□□□ -0.71
PTPN4-210ENST00000485247 URB2Q14146 1524 aaKnown RBP10.57□□□□□ -0.72
PTPN4-210ENST00000485247 PYGBP11216 843 aa10.56□□□□□ -0.72
PTPN4-210ENST00000485247 PCDHB13Q9Y5F0 798 aa10.55□□□□□ -0.72
PTPN4-210ENST00000485247 ARAP1Q96P48 1450 aa10.55□□□□□ -0.72
PTPN4-210ENST00000485247 GSE1Q14687 1217 aa10.54□□□□□ -0.72
PTPN4-210ENST00000485247 PELP1Q8IZL8 1130 aaKnown RBP10.54□□□□□ -0.72
PTPN4-210ENST00000485247 ZNF608Q9ULD9 1512 aaPredicted RBP10.53□□□□□ -0.72
PTPN4-210ENST00000485247 ASTLQ6HA08 431 aaPredicted RBP10.53□□□□□ -0.72
PTPN4-210ENST00000485247 IFNL1Q8IU54 200 aa10.53□□□□□ -0.72
PTPN4-210ENST00000485247 SGIP1Q9BQI5 828 aa10.53□□□□□ -0.72
PTPN4-210ENST00000485247 ATMINO43313 823 aaPredicted RBP10.52□□□□□ -0.73
PTPN4-210ENST00000485247 CFTRP13569 1480 aa10.51□□□□□ -0.73
PTPN4-210ENST00000485247 BMP2KQ9NSY1 1161 aaPredicted RBP10.51□□□□□ -0.73
PTPN4-210ENST00000485247 CIZ1Q9ULV3 898 aaPredicted RBP10.49□□□□□ -0.73
PTPN4-210ENST00000485247 WIZO95785 1651 aa10.48□□□□□ -0.73
PTPN4-210ENST00000485247 TIE1P35590 1138 aa10.48□□□□□ -0.73
PTPN4-210ENST00000485247 ATN1P54259 1190 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-210ENST00000485247 IFT140Q96RY7 1462 aa10.47□□□□□ -0.73
PTPN4-210ENST00000485247 PCDHB8Q9UN66 801 aa10.46□□□□□ -0.73
PTPN4-210ENST00000485247 TTLL13PA6NNM8 815 aa10.45□□□□□ -0.74
PTPN4-210ENST00000485247 CHRM1P11229 460 aaPredicted RBP10.45□□□□□ -0.74
PTPN4-210ENST00000485247 RSF1Q96T23 1441 aaPredicted RBP10.43□□□□□ -0.74
PTPN4-210ENST00000485247 CHD1O14646 1710 aa10.42□□□□□ -0.74
PTPN4-210ENST00000485247 LHX8Q68G74 356 aa10.42□□□□□ -0.74
PTPN4-210ENST00000485247 EIF4G3O43432 1585 aaKnown RBP10.41□□□□□ -0.74
PTPN4-210ENST00000485247 METRNQ9UJH8 293 aa10.4□□□□□ -0.74
PTPN4-210ENST00000485247 AQRO60306 1485 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTPN4-210ENST00000485247 ILDR1Q86SU0 546 aaPredicted RBP10.39□□□□□ -0.75
PTPN4-210ENST00000485247 TMEM106CQ9BVX2 250 aa10.39□□□□□ -0.75
PTPN4-210ENST00000485247 POTEB2H3BUK9 544 aa10.38□□□□□ -0.75
PTPN4-210ENST00000485247 SLC39A7Q92504 469 aa10.38□□□□□ -0.75
PTPN4-210ENST00000485247 TRIM35Q9UPQ4 493 aa10.38□□□□□ -0.75
PTPN4-210ENST00000485247 ZNF467Q7Z7K2 595 aaPredicted RBP10.37□□□□□ -0.75
PTPN4-210ENST00000485247 TOPBP1Q92547 1522 aa10.37□□□□□ -0.75
PTPN4-210ENST00000485247 C7P10643 843 aa10.36□□□□□ -0.75
PTPN4-210ENST00000485247 POTEFA5A3E0 1075 aa10.35□□□□□ -0.75
PTPN4-210ENST00000485247 RNF25Q96BH1 459 aaPredicted RBP10.31□□□□□ -0.76
PTPN4-210ENST00000485247 PSEN1P49768 467 aa10.3□□□□□ -0.76
PTPN4-210ENST00000485247 COLQQ9Y215 455 aaPredicted RBP10.3□□□□□ -0.76
PTPN4-210ENST00000485247 PRDM2Q13029 1718 aa10.3□□□□□ -0.76
PTPN4-210ENST00000485247 POTEJP0CG39 1038 aa10.29□□□□□ -0.76
PTPN4-210ENST00000485247 TARBP1Q13395 1621 aaKnown RBP10.29□□□□□ -0.76
PTPN4-210ENST00000485247 TOP2AP11388 1531 aaKnown RBP10.28□□□□□ -0.76
PTPN4-210ENST00000485247 CLASP1Q7Z460 1538 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms