RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 KIF27Q86VH2 1401 aa22.87■■□□□ 1.25
SMAD9-204ENST00000483941 PRG4Q92954 1404 aaPredicted RBP22.82■■□□□ 1.24
SMAD9-204ENST00000483941 FAM9AQ8IZU1 332 aaPredicted RBP22.81■■□□□ 1.24
SMAD9-204ENST00000483941 CSRNP3Q8WYN3 585 aa22.81■■□□□ 1.24
SMAD9-204ENST00000483941 RUSC2Q8N2Y8 1516 aa22.8■■□□□ 1.24
SMAD9-204ENST00000483941 ABCC10Q5T3U5 1492 aa22.77■■□□□ 1.24
SMAD9-204ENST00000483941 MAPKBP1O60336 1514 aa22.77■■□□□ 1.24
SMAD9-204ENST00000483941 DIP2BQ9P265 1576 aa22.76■■□□□ 1.23
SMAD9-204ENST00000483941 ADCY10Q96PN6 1610 aa22.72■■□□□ 1.23
SMAD9-204ENST00000483941 JPH4Q96JJ6 628 aa22.7■■□□□ 1.22
SMAD9-204ENST00000483941 KDM6BO15054 1643 aa22.7■■□□□ 1.22
SMAD9-204ENST00000483941 FAM69CQ0P6D2 419 aa22.69■■□□□ 1.22
SMAD9-204ENST00000483941 TSPOAP1O95153 1857 aa22.65■■□□□ 1.22
SMAD9-204ENST00000483941 NPM1P06748 294 aaKnown RBP eCLIP22.65■■□□□ 1.22
SMAD9-204ENST00000483941 IGF1RP08069 1367 aa22.63■■□□□ 1.21
SMAD9-204ENST00000483941 KDM4FA0A1W2PPD8 638 aa22.55■■□□□ 1.2
SMAD9-204ENST00000483941 GOLGA3Q08378 1498 aa22.54■■□□□ 1.2
SMAD9-204ENST00000483941 PRXQ9BXM0 1461 aa22.54■■□□□ 1.2
SMAD9-204ENST00000483941 KIF21BO75037 1637 aa22.54■■□□□ 1.2
SMAD9-204ENST00000483941 CARMIL1Q5VZK9 1371 aa22.54■■□□□ 1.2
SMAD9-204ENST00000483941 LOC105371045A0A1W2PR82 267 aa22.53■■□□□ 1.2
SMAD9-204ENST00000483941 KIAA0586Q9BVV6 1533 aa22.52■■□□□ 1.2
SMAD9-204ENST00000483941 CUL7Q14999 1698 aa22.52■■□□□ 1.2
SMAD9-204ENST00000483941 RAPGEF2Q9Y4G8 1499 aa22.48■■□□□ 1.19
SMAD9-204ENST00000483941 UBTFP17480 764 aaKnown RBP22.48■■□□□ 1.19
SMAD9-204ENST00000483941 PPRC1Q5VV67 1664 aaKnown RBP22.43■■□□□ 1.18
SMAD9-204ENST00000483941 TNIKQ9UKE5 1360 aa22.42■■□□□ 1.18
SMAD9-204ENST00000483941 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
SMAD9-204ENST00000483941 ABCC2Q92887 1545 aa22.39■■□□□ 1.17
SMAD9-204ENST00000483941 PTPRGP23470 1445 aa22.38■■□□□ 1.17
SMAD9-204ENST00000483941 GLI2P10070 1586 aa22.38■■□□□ 1.17
SMAD9-204ENST00000483941 ILDR1Q86SU0 546 aaPredicted RBP22.37■■□□□ 1.17
SMAD9-204ENST00000483941 ADGRL1O94910 1474 aa22.35■■□□□ 1.17
SMAD9-204ENST00000483941 ASXL2Q76L83 1435 aa22.34■■□□□ 1.17
SMAD9-204ENST00000483941 PLB1Q6P1J6 1458 aa22.34■■□□□ 1.17
SMAD9-204ENST00000483941 CARMIL2Q6F5E8 1435 aa22.32■■□□□ 1.16
SMAD9-204ENST00000483941 IQGAP2Q13576 1575 aa22.31■■□□□ 1.16
SMAD9-204ENST00000483941 TTBK1Q5TCY1 1321 aaPredicted RBP22.3■■□□□ 1.16
SMAD9-204ENST00000483941 UHRF1BP1LA0JNW5 1464 aa22.28■■□□□ 1.16
SMAD9-204ENST00000483941 MAP3K4Q9Y6R4 1608 aa22.28■■□□□ 1.16
SMAD9-204ENST00000483941 HECW2Q9P2P5 1572 aa22.25■■□□□ 1.15
SMAD9-204ENST00000483941 EPRSP07814 1512 aaKnown RBP22.22■■□□□ 1.15
SMAD9-204ENST00000483941 UACAQ9BZF9 1416 aa22.22■■□□□ 1.15
SMAD9-204ENST00000483941 TEX14Q8IWB6 1497 aa22.21■■□□□ 1.15
SMAD9-204ENST00000483941 ZCCHC11Q5TAX3 1644 aaKnown RBP22.2■■□□□ 1.15
SMAD9-204ENST00000483941 CEP162Q5TB80 1403 aa22.2■■□□□ 1.14
SMAD9-204ENST00000483941 COL17A1Q9UMD9 1497 aaPredicted RBP22.2■■□□□ 1.14
SMAD9-204ENST00000483941 DISP1Q96F81 1524 aa22.19■■□□□ 1.14
SMAD9-204ENST00000483941 KDM5BQ9UGL1 1544 aa22.19■■□□□ 1.14
SMAD9-204ENST00000483941 CLIP1P30622 1438 aa22.14■■□□□ 1.14
SMAD9-204ENST00000483941 KIAA0556O60303 1618 aa22.13■■□□□ 1.13
SMAD9-204ENST00000483941 UGGT2Q9NYU1 1516 aa22.11■■□□□ 1.13
SMAD9-204ENST00000483941 CTTNBP2Q8WZ74 1663 aa22.09■■□□□ 1.13
SMAD9-204ENST00000483941 WDR7Q9Y4E6 1490 aa22.07■■□□□ 1.12
SMAD9-204ENST00000483941 CFAP43Q8NDM7 1665 aa22.05■■□□□ 1.12
SMAD9-204ENST00000483941 RANGAP1P46060 587 aaPredicted RBP22.05■■□□□ 1.12
SMAD9-204ENST00000483941 EFCAB5A4FU69 1503 aa22.03■■□□□ 1.12
SMAD9-204ENST00000483941 MAGI3Q5TCQ9 1506 aa21.98■■□□□ 1.11
SMAD9-204ENST00000483941 ARHGAP35Q9NRY4 1499 aa21.96■■□□□ 1.11
SMAD9-204ENST00000483941 CD109Q6YHK3 1445 aa21.94■■□□□ 1.1
SMAD9-204ENST00000483941 ABCA8O94911 1581 aa21.92■■□□□ 1.1
SMAD9-204ENST00000483941 VPS8Q8N3P4 1428 aa21.91■■□□□ 1.1
SMAD9-204ENST00000483941 SAMD9Q5K651 1589 aa21.88■■□□□ 1.09
SMAD9-204ENST00000483941 FMN1Q68DA7 1419 aa21.88■■□□□ 1.09
SMAD9-204ENST00000483941 APLP2Q06481 763 aa21.85■■□□□ 1.09
SMAD9-204ENST00000483941 P3H3Q8IVL6 736 aa21.85■■□□□ 1.09
SMAD9-204ENST00000483941 KCNH8Q96L42 1107 aa21.83■■□□□ 1.09
SMAD9-204ENST00000483941 ARAP3Q8WWN8 1544 aa21.82■■□□□ 1.08
SMAD9-204ENST00000483941 FHOD3Q2V2M9 1422 aa21.81■■□□□ 1.08
SMAD9-204ENST00000483941 ADAMTSL3P82987 1691 aa21.8■■□□□ 1.08
SMAD9-204ENST00000483941 FBXO41Q8TF61 875 aa21.8■■□□□ 1.08
SMAD9-204ENST00000483941 ABCA9Q8IUA7 1624 aa21.76■■□□□ 1.07
SMAD9-204ENST00000483941 PTPRMP28827 1452 aa21.76■■□□□ 1.07
SMAD9-204ENST00000483941 CASKIN1Q8WXD9 1431 aa21.73■■□□□ 1.07
SMAD9-204ENST00000483941 BCORL1Q5H9F3 1711 aa21.72■■□□□ 1.07
SMAD9-204ENST00000483941 FYCO1Q9BQS8 1478 aa21.71■■□□□ 1.07
SMAD9-204ENST00000483941 PCF11O94913 1555 aaKnown RBP21.7■■□□□ 1.06
SMAD9-204ENST00000483941 MADDQ8WXG6 1647 aa21.69■■□□□ 1.06
SMAD9-204ENST00000483941 PHLDB1Q86UU1 1377 aa21.68■■□□□ 1.06
SMAD9-204ENST00000483941 FRMPD1Q5SYB0 1578 aa21.68■■□□□ 1.06
SMAD9-204ENST00000483941 ATP10BO94823 1461 aa21.67■■□□□ 1.06
SMAD9-204ENST00000483941 ATP1B4Q9UN42 357 aaPredicted RBP21.66■■□□□ 1.06
SMAD9-204ENST00000483941 MAP3K1Q13233 1512 aa21.65■■□□□ 1.06
SMAD9-204ENST00000483941 NEO1Q92859 1461 aa21.65■■□□□ 1.06
SMAD9-204ENST00000483941 ARID3CA6NKF2 412 aa21.65■■□□□ 1.06
SMAD9-204ENST00000483941 LMTK3Q96Q04 1460 aa21.63■■□□□ 1.05
SMAD9-204ENST00000483941 ARHGEF40Q8TER5 1519 aa21.62■■□□□ 1.05
SMAD9-204ENST00000483941 RIMS1Q86UR5 1692 aaKnown RBP21.62■■□□□ 1.05
SMAD9-204ENST00000483941 RAPGEF6Q8TEU7 1601 aa21.62■■□□□ 1.05
SMAD9-204ENST00000483941 RAPGEF3O95398 923 aa21.6■■□□□ 1.05
SMAD9-204ENST00000483941 CCDC18Q5T9S5 1454 aa21.59■■□□□ 1.05
SMAD9-204ENST00000483941 HECW1Q76N89 1606 aa21.59■■□□□ 1.05
SMAD9-204ENST00000483941 RICTORQ6R327 1708 aa21.57■■□□□ 1.04
SMAD9-204ENST00000483941 CDK11AQ9UQ88 783 aaPredicted RBP21.56■■□□□ 1.04
SMAD9-204ENST00000483941 ARID4BQ4LE39 1312 aaPredicted RBP21.55■■□□□ 1.04
SMAD9-204ENST00000483941 CFAP74Q9C0B2 1584 aa21.53■■□□□ 1.04
SMAD9-204ENST00000483941 TIAM1Q13009 1591 aa21.52■■□□□ 1.04
SMAD9-204ENST00000483941 NUP153P49790 1475 aaKnown RBP21.49■■□□□ 1.03
SMAD9-204ENST00000483941 DENND4BO75064 1496 aaPredicted RBP21.48■■□□□ 1.03
SMAD9-204ENST00000483941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 213.5 ms