RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 PCGF6Q9BYE7 350 aa40.96■■■■■ 4.15
SHOX2-204ENST00000483851 EFCAB5A4FU69 1503 aa40.89■■■■■ 4.14
SHOX2-204ENST00000483851 MAGI1Q96QZ7 1491 aaPredicted RBP40.88■■■■■ 4.13
SHOX2-204ENST00000483851 SNAPC4Q5SXM2 1469 aa40.84■■■■■ 4.13
SHOX2-204ENST00000483851 APLP2Q06481 763 aa40.72■■■■■ 4.11
SHOX2-204ENST00000483851 HRCP23327 699 aa40.7■■■■■ 4.11
SHOX2-204ENST00000483851 SYNJ2O15056 1496 aa40.69■■■■■ 4.1
SHOX2-204ENST00000483851 GRIN2AQ12879 1464 aa40.69■■■■■ 4.1
SHOX2-204ENST00000483851 SAMD9Q5K651 1589 aa40.66■■■■■ 4.1
SHOX2-204ENST00000483851 PPARGC1BQ86YN6 1023 aaKnown RBP40.64■■■■■ 4.1
SHOX2-204ENST00000483851 IQGAP2Q13576 1575 aa40.64■■■■■ 4.1
SHOX2-204ENST00000483851 KIAA0586Q9BVV6 1533 aa40.56■■■■■ 4.08
SHOX2-204ENST00000483851 MAP3K1Q13233 1512 aa40.52■■■■■ 4.08
SHOX2-204ENST00000483851 CHMP7Q8WUX9 453 aaPredicted RBP40.52■■■■■ 4.08
SHOX2-204ENST00000483851 FHOD3Q2V2M9 1422 aa40.5■■■■■ 4.07
SHOX2-204ENST00000483851 FMN1Q68DA7 1419 aa40.5■■■■■ 4.07
SHOX2-204ENST00000483851 UGGT2Q9NYU1 1516 aa40.48■■■■■ 4.07
SHOX2-204ENST00000483851 P3H3Q8IVL6 736 aa40.42■■■■■ 4.06
SHOX2-204ENST00000483851 NUP160Q12769 1436 aa40.42■■■■■ 4.06
SHOX2-204ENST00000483851 FYCO1Q9BQS8 1478 aa40.42■■■■■ 4.06
SHOX2-204ENST00000483851 CASKIN1Q8WXD9 1431 aa40.4■■■■■ 4.06
SHOX2-204ENST00000483851 PCF11O94913 1555 aaKnown RBP40.38■■■■■ 4.06
SHOX2-204ENST00000483851 CEP170Q5SW79 1584 aa40.38■■■■■ 4.06
SHOX2-204ENST00000483851 TIAM1Q13009 1591 aa40.33■■■■■ 4.05
SHOX2-204ENST00000483851 FBLN2P98095 1184 aa40.28■■■■■ 4.04
SHOX2-204ENST00000483851 TTBK1Q5TCY1 1321 aaPredicted RBP40.28■■■■■ 4.04
SHOX2-204ENST00000483851 CFAP43Q8NDM7 1665 aa40.27■■■■■ 4.04
SHOX2-204ENST00000483851 KIAA0556O60303 1618 aa40.21■■■■■ 4.03
SHOX2-204ENST00000483851 KANK4Q5T7N3 995 aaPredicted RBP40.21■■■■■ 4.03
SHOX2-204ENST00000483851 DISP1Q96F81 1524 aa40.2■■■■■ 4.03
SHOX2-204ENST00000483851 CHD1O14646 1710 aa40.14■■■■■ 4.02
SHOX2-204ENST00000483851 LRRC9Q6ZRR7 1453 aa40.14■■■■■ 4.02
SHOX2-204ENST00000483851 JPH4Q96JJ6 628 aa40.06■■■■■ 4
SHOX2-204ENST00000483851 CARMIL2Q6F5E8 1435 aa40.06■■■■■ 4
SHOX2-204ENST00000483851 HECW1Q76N89 1606 aa40.04■■■■■ 4
SHOX2-204ENST00000483851 ATP1B4Q9UN42 357 aaPredicted RBP40.02■■■■■ 4
SHOX2-204ENST00000483851 CCDC18Q5T9S5 1454 aa40.01■■■■■ 4
SHOX2-204ENST00000483851 LRRIQ1Q96JM4 1722 aa39.97■■■■□ 3.99
SHOX2-204ENST00000483851 RRBP1Q9P2E9 1410 aaKnown RBP39.95■■■■□ 3.99
SHOX2-204ENST00000483851 SHROOM2Q13796 1616 aa39.86■■■■□ 3.97
SHOX2-204ENST00000483851 EPRSP07814 1512 aaKnown RBP39.85■■■■□ 3.97
SHOX2-204ENST00000483851 RAPGEF6Q8TEU7 1601 aa39.84■■■■□ 3.97
SHOX2-204ENST00000483851 MTUS2Q5JR59 1369 aa39.81■■■■□ 3.96
SHOX2-204ENST00000483851 EHBP1L1Q8N3D4 1523 aa39.8■■■■□ 3.96
SHOX2-204ENST00000483851 CCNB3Q8WWL7 1395 aa39.77■■■■□ 3.96
SHOX2-204ENST00000483851 PRG4Q92954 1404 aaPredicted RBP39.77■■■■□ 3.96
SHOX2-204ENST00000483851 CLASP1Q7Z460 1538 aa39.74■■■■□ 3.95
SHOX2-204ENST00000483851 NUP153P49790 1475 aaKnown RBP39.72■■■■□ 3.95
SHOX2-204ENST00000483851 PHLDB1Q86UU1 1377 aa39.71■■■■□ 3.95
SHOX2-204ENST00000483851 SUPT6HQ7KZ85 1726 aaKnown RBP39.69■■■■□ 3.94
SHOX2-204ENST00000483851 ABCA8O94911 1581 aa39.64■■■■□ 3.94
SHOX2-204ENST00000483851 CDK13Q14004 1512 aaKnown RBP39.64■■■■□ 3.94
SHOX2-204ENST00000483851 PLB1Q6P1J6 1458 aa39.62■■■■□ 3.93
SHOX2-204ENST00000483851 MAGI3Q5TCQ9 1506 aa39.62■■■■□ 3.93
SHOX2-204ENST00000483851 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.6■■■■□ 3.93
SHOX2-204ENST00000483851 ARHGEF11O15085 1522 aa39.6■■■■□ 3.93
SHOX2-204ENST00000483851 NCOA2Q15596 1464 aa39.59■■■■□ 3.93
SHOX2-204ENST00000483851 ZEB1P37275 1124 aaPredicted RBP39.59■■■■□ 3.93
SHOX2-204ENST00000483851 HNRNPUL2Q1KMD3 747 aaKnown RBP39.59■■■■□ 3.93
SHOX2-204ENST00000483851 PTPRGP23470 1445 aa39.58■■■■□ 3.93
SHOX2-204ENST00000483851 CDK11AQ9UQ88 783 aaPredicted RBP39.56■■■■□ 3.92
SHOX2-204ENST00000483851 MYOM3Q5VTT5 1437 aa39.49■■■■□ 3.91
SHOX2-204ENST00000483851 FGD6Q6ZV73 1430 aa39.49■■■■□ 3.91
SHOX2-204ENST00000483851 TROQ12816 1431 aaPredicted RBP39.39■■■■□ 3.9
SHOX2-204ENST00000483851 ERCC6L2Q5T890 1561 aa39.39■■■■□ 3.9
SHOX2-204ENST00000483851 UACAQ9BZF9 1416 aa39.38■■■■□ 3.9
SHOX2-204ENST00000483851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.38■■■■□ 3.89
SHOX2-204ENST00000483851 ARID3CA6NKF2 412 aa39.35■■■■□ 3.89
SHOX2-204ENST00000483851 CCER1Q8TC90 406 aaPredicted RBP39.35■■■■□ 3.89
SHOX2-204ENST00000483851 ATP10BO94823 1461 aa39.35■■■■□ 3.89
SHOX2-204ENST00000483851 MIA2Q96PC5 1412 aa39.33■■■■□ 3.89
SHOX2-204ENST00000483851 ADCY10Q96PN6 1610 aa39.33■■■■□ 3.89
SHOX2-204ENST00000483851 FAM50AQ14320 339 aaKnown RBP39.32■■■■□ 3.89
SHOX2-204ENST00000483851 TCOF1Q13428 1488 aaKnown RBP39.27■■■■□ 3.88
SHOX2-204ENST00000483851 OSCARQ8IYS5 282 aa39.27■■■■□ 3.88
SHOX2-204ENST00000483851 PTPN23Q9H3S7 1636 aa39.27■■■■□ 3.88
SHOX2-204ENST00000483851 ABCC2Q92887 1545 aa39.27■■■■□ 3.88
SHOX2-204ENST00000483851 PLEKHD1A6NEE1 506 aa39.23■■■■□ 3.87
SHOX2-204ENST00000483851 UHRF1BP1LA0JNW5 1464 aa39.22■■■■□ 3.87
SHOX2-204ENST00000483851 ITGAEP38570 1179 aa39.17■■■■□ 3.86
SHOX2-204ENST00000483851 ITSN2Q9NZM3 1697 aa39.14■■■■□ 3.86
SHOX2-204ENST00000483851 KIF14Q15058 1648 aa39.14■■■■□ 3.86
SHOX2-204ENST00000483851 SETD5Q9C0A6 1442 aa39.08■■■■□ 3.85
SHOX2-204ENST00000483851 ABCC10Q5T3U5 1492 aa39.03■■■■□ 3.84
SHOX2-204ENST00000483851 KDM5BQ9UGL1 1544 aa39.03■■■■□ 3.84
SHOX2-204ENST00000483851 GPATCH8Q9UKJ3 1502 aaKnown RBP39.03■■■■□ 3.84
SHOX2-204ENST00000483851 CLSPNQ9HAW4 1339 aa39■■■■□ 3.83
SHOX2-204ENST00000483851 RAB3GAP2Q9H2M9 1393 aa38.99■■■■□ 3.83
SHOX2-204ENST00000483851 PTPRKQ15262 1439 aa38.96■■■■□ 3.83
SHOX2-204ENST00000483851 ZCCHC11Q5TAX3 1644 aaKnown RBP38.95■■■■□ 3.83
SHOX2-204ENST00000483851 HFM1A2PYH4 1435 aa38.93■■■■□ 3.82
SHOX2-204ENST00000483851 DHX57Q6P158 1386 aaKnown RBP38.93■■■■□ 3.82
SHOX2-204ENST00000483851 CDC42BPAQ5VT25 1732 aa38.92■■■■□ 3.82
SHOX2-204ENST00000483851 CFDP1Q9UEE9 299 aaPredicted RBP38.91■■■■□ 3.82
SHOX2-204ENST00000483851 AKNAQ7Z591 1439 aa38.91■■■■□ 3.82
SHOX2-204ENST00000483851 DNMT1P26358 1616 aaKnown RBP38.89■■■■□ 3.82
SHOX2-204ENST00000483851 CAMSAP2Q08AD1 1489 aa38.85■■■■□ 3.81
SHOX2-204ENST00000483851 DAPK1P53355 1430 aa38.82■■■■□ 3.81
SHOX2-204ENST00000483851 NAIPQ13075 1403 aa38.79■■■■□ 3.8
SHOX2-204ENST00000483851 PREX2Q70Z35 1606 aa38.78■■■■□ 3.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms