RNA–Protein interactions for RNA: ENST00000483030.1

CSDE1-206, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-206ENST00000483030 PRG4Q92954 1404 aaPredicted RBP13.17□□□□□ -0.3
CSDE1-206ENST00000483030 ERICH3Q5RHP9 1530 aa13.15□□□□□ -0.3
CSDE1-206ENST00000483030 BIVM-ERCC5R4GMW8 1640 aa13.13□□□□□ -0.31
CSDE1-206ENST00000483030 SHROOM2Q13796 1616 aa13.13□□□□□ -0.31
CSDE1-206ENST00000483030 NPM1P06748 294 aaKnown RBP eCLIP13.12□□□□□ -0.31
CSDE1-206ENST00000483030 FAM69CQ0P6D2 419 aa13.11□□□□□ -0.31
CSDE1-206ENST00000483030 IGF1RP08069 1367 aa13.05□□□□□ -0.32
CSDE1-206ENST00000483030 ABCC10Q5T3U5 1492 aa13.04□□□□□ -0.32
CSDE1-206ENST00000483030 RUSC2Q8N2Y8 1516 aa13.01□□□□□ -0.33
CSDE1-206ENST00000483030 KIF13AQ9H1H9 1805 aa13□□□□□ -0.33
CSDE1-206ENST00000483030 KIAA0586Q9BVV6 1533 aa13□□□□□ -0.33
CSDE1-206ENST00000483030 TTBK1Q5TCY1 1321 aaPredicted RBP13□□□□□ -0.33
CSDE1-206ENST00000483030 KIF27Q86VH2 1401 aa12.98□□□□□ -0.33
CSDE1-206ENST00000483030 MAPKBP1O60336 1514 aa12.98□□□□□ -0.33
CSDE1-206ENST00000483030 PTPRGP23470 1445 aa12.96□□□□□ -0.33
CSDE1-206ENST00000483030 ADCY10Q96PN6 1610 aa12.95□□□□□ -0.34
CSDE1-206ENST00000483030 CARMIL1Q5VZK9 1371 aa12.94□□□□□ -0.34
CSDE1-206ENST00000483030 KDM4FA0A1W2PPD8 638 aa12.94□□□□□ -0.34
CSDE1-206ENST00000483030 DIP2BQ9P265 1576 aa12.94□□□□□ -0.34
CSDE1-206ENST00000483030 CARMIL2Q6F5E8 1435 aa12.9□□□□□ -0.34
CSDE1-206ENST00000483030 TNIKQ9UKE5 1360 aa12.9□□□□□ -0.34
CSDE1-206ENST00000483030 KDM6BO15054 1643 aa12.88□□□□□ -0.35
CSDE1-206ENST00000483030 CUL7Q14999 1698 aa12.88□□□□□ -0.35
CSDE1-206ENST00000483030 ABCC2Q92887 1545 aa12.86□□□□□ -0.35
CSDE1-206ENST00000483030 ASXL2Q76L83 1435 aa12.85□□□□□ -0.35
CSDE1-206ENST00000483030 PLB1Q6P1J6 1458 aa12.84□□□□□ -0.35
CSDE1-206ENST00000483030 TSPOAP1O95153 1857 aa12.83□□□□□ -0.36
CSDE1-206ENST00000483030 UACAQ9BZF9 1416 aa12.83□□□□□ -0.36
CSDE1-206ENST00000483030 UHRF1BP1LA0JNW5 1464 aa12.8□□□□□ -0.36
CSDE1-206ENST00000483030 IQGAP2Q13576 1575 aa12.8□□□□□ -0.36
CSDE1-206ENST00000483030 DISP1Q96F81 1524 aa12.79□□□□□ -0.36
CSDE1-206ENST00000483030 COL17A1Q9UMD9 1497 aaPredicted RBP12.78□□□□□ -0.36
CSDE1-206ENST00000483030 GLI2P10070 1586 aa12.77□□□□□ -0.36
CSDE1-206ENST00000483030 RAPGEF2Q9Y4G8 1499 aa12.77□□□□□ -0.37
CSDE1-206ENST00000483030 MSH5O43196 834 aa12.76□□□□□ -0.37
CSDE1-206ENST00000483030 EPRSP07814 1512 aaKnown RBP12.76□□□□□ -0.37
CSDE1-206ENST00000483030 KDM5BQ9UGL1 1544 aa12.76□□□□□ -0.37
CSDE1-206ENST00000483030 UGGT2Q9NYU1 1516 aa12.73□□□□□ -0.37
CSDE1-206ENST00000483030 ILDR1Q86SU0 546 aaPredicted RBP12.73□□□□□ -0.37
CSDE1-206ENST00000483030 ADGRL1O94910 1474 aa12.72□□□□□ -0.37
CSDE1-206ENST00000483030 KCNH8Q96L42 1107 aa12.72□□□□□ -0.37
CSDE1-206ENST00000483030 PPRC1Q5VV67 1664 aaKnown RBP12.72□□□□□ -0.37
CSDE1-206ENST00000483030 TEX14Q8IWB6 1497 aa12.71□□□□□ -0.38
CSDE1-206ENST00000483030 KIAA0556O60303 1618 aa12.68□□□□□ -0.38
CSDE1-206ENST00000483030 WDR7Q9Y4E6 1490 aa12.67□□□□□ -0.38
CSDE1-206ENST00000483030 ZCCHC11Q5TAX3 1644 aaKnown RBP12.67□□□□□ -0.38
CSDE1-206ENST00000483030 MAP3K4Q9Y6R4 1608 aa12.67□□□□□ -0.38
CSDE1-206ENST00000483030 CD109Q6YHK3 1445 aa12.66□□□□□ -0.38
CSDE1-206ENST00000483030 ARID3CA6NKF2 412 aa12.64□□□□□ -0.39
CSDE1-206ENST00000483030 GOLGA3Q08378 1498 aa12.64□□□□□ -0.39
CSDE1-206ENST00000483030 P3H3Q8IVL6 736 aa12.63□□□□□ -0.39
CSDE1-206ENST00000483030 FAM9AQ8IZU1 332 aaPredicted RBP12.62□□□□□ -0.39
CSDE1-206ENST00000483030 MAGI3Q5TCQ9 1506 aa12.61□□□□□ -0.39
CSDE1-206ENST00000483030 ABCA8O94911 1581 aa12.6□□□□□ -0.39
CSDE1-206ENST00000483030 PRXQ9BXM0 1461 aa12.59□□□□□ -0.39
CSDE1-206ENST00000483030 HECW2Q9P2P5 1572 aa12.58□□□□□ -0.4
CSDE1-206ENST00000483030 ATP10BO94823 1461 aa12.56□□□□□ -0.4
CSDE1-206ENST00000483030 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.54□□□□□ -0.4
CSDE1-206ENST00000483030 RAPGEF3O95398 923 aa12.54□□□□□ -0.4
CSDE1-206ENST00000483030 HNRNPUL2Q1KMD3 747 aaKnown RBP12.54□□□□□ -0.4
CSDE1-206ENST00000483030 CTTNBP2Q8WZ74 1663 aa12.54□□□□□ -0.4
CSDE1-206ENST00000483030 CSRNP3Q8WYN3 585 aa12.53□□□□□ -0.4
CSDE1-206ENST00000483030 CFAP43Q8NDM7 1665 aa12.53□□□□□ -0.4
CSDE1-206ENST00000483030 ARAP3Q8WWN8 1544 aa12.52□□□□□ -0.4
CSDE1-206ENST00000483030 RANGAP1P46060 587 aaPredicted RBP12.51□□□□□ -0.41
CSDE1-206ENST00000483030 PHLDB1Q86UU1 1377 aa12.5□□□□□ -0.41
CSDE1-206ENST00000483030 ARID4BQ4LE39 1312 aaPredicted RBP12.47□□□□□ -0.41
CSDE1-206ENST00000483030 KIF21BO75037 1637 aa12.47□□□□□ -0.41
CSDE1-206ENST00000483030 PTPRMP28827 1452 aa12.45□□□□□ -0.42
CSDE1-206ENST00000483030 PLEKHD1A6NEE1 506 aa12.44□□□□□ -0.42
CSDE1-206ENST00000483030 NEO1Q92859 1461 aa12.44□□□□□ -0.42
CSDE1-206ENST00000483030 ABCA9Q8IUA7 1624 aa12.44□□□□□ -0.42
CSDE1-206ENST00000483030 FBXO41Q8TF61 875 aa12.43□□□□□ -0.42
CSDE1-206ENST00000483030 NUP153P49790 1475 aaKnown RBP12.41□□□□□ -0.42
CSDE1-206ENST00000483030 FHOD3Q2V2M9 1422 aa12.41□□□□□ -0.42
CSDE1-206ENST00000483030 RAPGEF6Q8TEU7 1601 aa12.4□□□□□ -0.42
CSDE1-206ENST00000483030 SAMD9Q5K651 1589 aa12.4□□□□□ -0.42
CSDE1-206ENST00000483030 PLPPR3Q6T4P5 718 aa12.39□□□□□ -0.43
CSDE1-206ENST00000483030 ADAMTSL3P82987 1691 aa12.38□□□□□ -0.43
CSDE1-206ENST00000483030 DENND4BO75064 1496 aaPredicted RBP12.38□□□□□ -0.43
CSDE1-206ENST00000483030 AKNAQ7Z591 1439 aa12.37□□□□□ -0.43
CSDE1-206ENST00000483030 EEA1Q15075 1411 aa12.36□□□□□ -0.43
CSDE1-206ENST00000483030 FRMPD1Q5SYB0 1578 aa12.35□□□□□ -0.43
CSDE1-206ENST00000483030 HSPA2P54652 639 aa12.35□□□□□ -0.43
CSDE1-206ENST00000483030 FANCAO15360 1455 aa12.34□□□□□ -0.43
CSDE1-206ENST00000483030 MLECQ14165 292 aa12.34□□□□□ -0.43
CSDE1-206ENST00000483030 BCORL1Q5H9F3 1711 aa12.34□□□□□ -0.43
CSDE1-206ENST00000483030 EHMT2Q96KQ7 1210 aa12.33□□□□□ -0.44
CSDE1-206ENST00000483030 ATP1B4Q9UN42 357 aaPredicted RBP12.33□□□□□ -0.44
CSDE1-206ENST00000483030 LMTK3Q96Q04 1460 aa12.33□□□□□ -0.44
CSDE1-206ENST00000483030 MADDQ8WXG6 1647 aa12.33□□□□□ -0.44
CSDE1-206ENST00000483030 PCF11O94913 1555 aaKnown RBP12.32□□□□□ -0.44
CSDE1-206ENST00000483030 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.32□□□□□ -0.44
CSDE1-206ENST00000483030 POGZQ7Z3K3 1410 aa12.31□□□□□ -0.44
CSDE1-206ENST00000483030 YEATS2Q9ULM3 1422 aa12.31□□□□□ -0.44
CSDE1-206ENST00000483030 ARHGEF40Q8TER5 1519 aa12.3□□□□□ -0.44
CSDE1-206ENST00000483030 SCAPERQ9BY12 1400 aa12.29□□□□□ -0.44
CSDE1-206ENST00000483030 UBTFP17480 764 aaKnown RBP12.29□□□□□ -0.44
CSDE1-206ENST00000483030 PLCH2O75038 1416 aa12.28□□□□□ -0.44
CSDE1-206ENST00000483030 EFCAB2Q5VUJ9 269 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms