RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 RUSC2Q8N2Y8 1516 aa23.6■■□□□ 1.37
VARS-225ENST00000482996 PRG4Q92954 1404 aaPredicted RBP23.59■■□□□ 1.37
VARS-225ENST00000482996 KIAA0586Q9BVV6 1533 aa23.58■■□□□ 1.36
VARS-225ENST00000482996 TRHP20396 242 aaPredicted RBP23.51■■□□□ 1.35
VARS-225ENST00000482996 RAPGEF2Q9Y4G8 1499 aa23.48■■□□□ 1.35
VARS-225ENST00000482996 IQGAP2Q13576 1575 aa23.39■■□□□ 1.33
VARS-225ENST00000482996 CARMIL2Q6F5E8 1435 aa23.36■■□□□ 1.33
VARS-225ENST00000482996 PRXQ9BXM0 1461 aa23.32■■□□□ 1.32
VARS-225ENST00000482996 PTPRGP23470 1445 aa23.3■■□□□ 1.32
VARS-225ENST00000482996 NPM1P06748 294 aaKnown RBP eCLIP23.29■■□□□ 1.32
VARS-225ENST00000482996 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
VARS-225ENST00000482996 TNIKQ9UKE5 1360 aa23.28■■□□□ 1.32
VARS-225ENST00000482996 EEA1Q15075 1411 aa23.27■■□□□ 1.32
VARS-225ENST00000482996 UGGT2Q9NYU1 1516 aa23.26■■□□□ 1.31
VARS-225ENST00000482996 TTBK1Q5TCY1 1321 aaPredicted RBP23.26■■□□□ 1.31
VARS-225ENST00000482996 DISP1Q96F81 1524 aa23.23■■□□□ 1.31
VARS-225ENST00000482996 ADCY10Q96PN6 1610 aa23.22■■□□□ 1.31
VARS-225ENST00000482996 CTTNBP2Q8WZ74 1663 aa23.21■■□□□ 1.31
VARS-225ENST00000482996 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
VARS-225ENST00000482996 FAM9AQ8IZU1 332 aaPredicted RBP23.16■■□□□ 1.3
VARS-225ENST00000482996 KIAA0556O60303 1618 aa23.15■■□□□ 1.3
VARS-225ENST00000482996 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
VARS-225ENST00000482996 MAPKBP1O60336 1514 aa23.13■■□□□ 1.29
VARS-225ENST00000482996 UACAQ9BZF9 1416 aa23.12■■□□□ 1.29
VARS-225ENST00000482996 UHRF1BP1LA0JNW5 1464 aa23.1■■□□□ 1.29
VARS-225ENST00000482996 ABCC2Q92887 1545 aa23.09■■□□□ 1.29
VARS-225ENST00000482996 ABCC10Q5T3U5 1492 aa23.07■■□□□ 1.28
VARS-225ENST00000482996 FAM69CQ0P6D2 419 aa23.07■■□□□ 1.28
VARS-225ENST00000482996 KIF13AQ9H1H9 1805 aa23.04■■□□□ 1.28
VARS-225ENST00000482996 DIP2BQ9P265 1576 aa23■■□□□ 1.27
VARS-225ENST00000482996 KIF21BO75037 1637 aa23■■□□□ 1.27
VARS-225ENST00000482996 PLB1Q6P1J6 1458 aa22.98■■□□□ 1.27
VARS-225ENST00000482996 KDM5BQ9UGL1 1544 aa22.98■■□□□ 1.27
VARS-225ENST00000482996 ASXL2Q76L83 1435 aa22.97■■□□□ 1.27
VARS-225ENST00000482996 P3H3Q8IVL6 736 aa22.96■■□□□ 1.27
VARS-225ENST00000482996 ABCA8O94911 1581 aa22.92■■□□□ 1.26
VARS-225ENST00000482996 RANGAP1P46060 587 aaPredicted RBP22.91■■□□□ 1.26
VARS-225ENST00000482996 SAMD9Q5K651 1589 aa22.91■■□□□ 1.26
VARS-225ENST00000482996 ZCCHC11Q5TAX3 1644 aaKnown RBP22.9■■□□□ 1.26
VARS-225ENST00000482996 UBTFP17480 764 aaKnown RBP22.88■■□□□ 1.25
VARS-225ENST00000482996 EHMT2Q96KQ7 1210 aa22.87■■□□□ 1.25
VARS-225ENST00000482996 GLI2P10070 1586 aa22.84■■□□□ 1.25
VARS-225ENST00000482996 EPRSP07814 1512 aaKnown RBP22.82■■□□□ 1.24
VARS-225ENST00000482996 WDR7Q9Y4E6 1490 aa22.82■■□□□ 1.24
VARS-225ENST00000482996 EFCAB5A4FU69 1503 aa22.81■■□□□ 1.24
VARS-225ENST00000482996 TSPOAP1O95153 1857 aa22.81■■□□□ 1.24
VARS-225ENST00000482996 FHOD3Q2V2M9 1422 aa22.81■■□□□ 1.24
VARS-225ENST00000482996 ARID3CA6NKF2 412 aa22.77■■□□□ 1.24
VARS-225ENST00000482996 RAPGEF6Q8TEU7 1601 aa22.75■■□□□ 1.23
VARS-225ENST00000482996 ATP10BO94823 1461 aa22.74■■□□□ 1.23
VARS-225ENST00000482996 KCNH8Q96L42 1107 aa22.74■■□□□ 1.23
VARS-225ENST00000482996 KDM6BO15054 1643 aa22.71■■□□□ 1.23
VARS-225ENST00000482996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
VARS-225ENST00000482996 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
VARS-225ENST00000482996 MAP3K4Q9Y6R4 1608 aa22.71■■□□□ 1.23
VARS-225ENST00000482996 TEX14Q8IWB6 1497 aa22.69■■□□□ 1.22
VARS-225ENST00000482996 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
VARS-225ENST00000482996 PPRC1Q5VV67 1664 aaKnown RBP22.68■■□□□ 1.22
VARS-225ENST00000482996 NUP153P49790 1475 aaKnown RBP22.67■■□□□ 1.22
VARS-225ENST00000482996 CD109Q6YHK3 1445 aa22.65■■□□□ 1.22
VARS-225ENST00000482996 ARHGAP35Q9NRY4 1499 aa22.65■■□□□ 1.22
VARS-225ENST00000482996 FMN1Q68DA7 1419 aa22.63■■□□□ 1.21
VARS-225ENST00000482996 CFAP43Q8NDM7 1665 aa22.62■■□□□ 1.21
VARS-225ENST00000482996 MAGI3Q5TCQ9 1506 aa22.6■■□□□ 1.21
VARS-225ENST00000482996 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
VARS-225ENST00000482996 ATP1B4Q9UN42 357 aaPredicted RBP22.56■■□□□ 1.2
VARS-225ENST00000482996 ABCA9Q8IUA7 1624 aa22.53■■□□□ 1.2
VARS-225ENST00000482996 COL17A1Q9UMD9 1497 aaPredicted RBP22.52■■□□□ 1.2
VARS-225ENST00000482996 HECW1Q76N89 1606 aa22.51■■□□□ 1.19
VARS-225ENST00000482996 CDK13Q14004 1512 aaKnown RBP22.49■■□□□ 1.19
VARS-225ENST00000482996 CDK11AQ9UQ88 783 aaPredicted RBP22.47■■□□□ 1.19
VARS-225ENST00000482996 CLIP1P30622 1438 aa22.47■■□□□ 1.19
VARS-225ENST00000482996 PHLDB1Q86UU1 1377 aa22.46■■□□□ 1.19
VARS-225ENST00000482996 NEO1Q92859 1461 aa22.41■■□□□ 1.18
VARS-225ENST00000482996 ARAP3Q8WWN8 1544 aa22.41■■□□□ 1.18
VARS-225ENST00000482996 CASKIN1Q8WXD9 1431 aa22.4■■□□□ 1.18
VARS-225ENST00000482996 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.38■■□□□ 1.17
VARS-225ENST00000482996 PCF11O94913 1555 aaKnown RBP22.36■■□□□ 1.17
VARS-225ENST00000482996 CCDC18Q5T9S5 1454 aa22.35■■□□□ 1.17
VARS-225ENST00000482996 TTC37Q6PGP7 1564 aa22.34■■□□□ 1.17
VARS-225ENST00000482996 TROQ12816 1431 aaPredicted RBP22.34■■□□□ 1.17
VARS-225ENST00000482996 FYCO1Q9BQS8 1478 aa22.34■■□□□ 1.17
VARS-225ENST00000482996 CFAP74Q9C0B2 1584 aa22.31■■□□□ 1.16
VARS-225ENST00000482996 FANCAO15360 1455 aa22.31■■□□□ 1.16
VARS-225ENST00000482996 KDM4FA0A1W2PPD8 638 aa22.3■■□□□ 1.16
VARS-225ENST00000482996 RAPGEF3O95398 923 aa22.3■■□□□ 1.16
VARS-225ENST00000482996 CEP162Q5TB80 1403 aa22.3■■□□□ 1.16
VARS-225ENST00000482996 AKNAQ7Z591 1439 aa22.3■■□□□ 1.16
VARS-225ENST00000482996 LRRIQ1Q96JM4 1722 aa22.29■■□□□ 1.16
VARS-225ENST00000482996 KIF14Q15058 1648 aa22.29■■□□□ 1.16
VARS-225ENST00000482996 PLCH2O75038 1416 aa22.29■■□□□ 1.16
VARS-225ENST00000482996 DENND4BO75064 1496 aaPredicted RBP22.26■■□□□ 1.15
VARS-225ENST00000482996 EFCAB2Q5VUJ9 269 aa22.25■■□□□ 1.15
VARS-225ENST00000482996 LOC105371045A0A1W2PR82 267 aa22.24■■□□□ 1.15
VARS-225ENST00000482996 ADGRL1O94910 1474 aa22.23■■□□□ 1.15
VARS-225ENST00000482996 MYO5CQ9NQX4 1742 aa22.22■■□□□ 1.15
VARS-225ENST00000482996 FRMPD1Q5SYB0 1578 aa22.2■■□□□ 1.14
VARS-225ENST00000482996 SCAPERQ9BY12 1400 aa22.18■■□□□ 1.14
VARS-225ENST00000482996 ARHGAP5Q13017 1502 aa22.17■■□□□ 1.14
VARS-225ENST00000482996 RICTORQ6R327 1708 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms