RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CYB5RLQ6IPT4 315 aa20.7■□□□□ 0.9
PTPRF-213ENST00000481019 RAPGEF2Q9Y4G8 1499 aa20.64■□□□□ 0.89
PTPRF-213ENST00000481019 KIAA0586Q9BVV6 1533 aa20.63■□□□□ 0.89
PTPRF-213ENST00000481019 JPH4Q96JJ6 628 aa20.63■□□□□ 0.89
PTPRF-213ENST00000481019 PRG4Q92954 1404 aaPredicted RBP20.61■□□□□ 0.89
PTPRF-213ENST00000481019 PRXQ9BXM0 1461 aa20.61■□□□□ 0.89
PTPRF-213ENST00000481019 FAM9AQ8IZU1 332 aaPredicted RBP20.56■□□□□ 0.88
PTPRF-213ENST00000481019 CSRNP3Q8WYN3 585 aa20.55■□□□□ 0.88
PTPRF-213ENST00000481019 IQGAP2Q13576 1575 aa20.52■□□□□ 0.88
PTPRF-213ENST00000481019 EEA1Q15075 1411 aa20.5■□□□□ 0.87
PTPRF-213ENST00000481019 CTTNBP2Q8WZ74 1663 aa20.46■□□□□ 0.87
PTPRF-213ENST00000481019 DISP1Q96F81 1524 aa20.44■□□□□ 0.86
PTPRF-213ENST00000481019 UGGT2Q9NYU1 1516 aa20.42■□□□□ 0.86
PTPRF-213ENST00000481019 KIF21BO75037 1637 aa20.37■□□□□ 0.85
PTPRF-213ENST00000481019 TTBK1Q5TCY1 1321 aaPredicted RBP20.36■□□□□ 0.85
PTPRF-213ENST00000481019 CARMIL2Q6F5E8 1435 aa20.36■□□□□ 0.85
PTPRF-213ENST00000481019 KIAA0556O60303 1618 aa20.35■□□□□ 0.85
PTPRF-213ENST00000481019 TNIKQ9UKE5 1360 aa20.34■□□□□ 0.85
PTPRF-213ENST00000481019 ADCY10Q96PN6 1610 aa20.34■□□□□ 0.85
PTPRF-213ENST00000481019 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
PTPRF-213ENST00000481019 PTPRGP23470 1445 aa20.33■□□□□ 0.84
PTPRF-213ENST00000481019 TRHP20396 242 aaPredicted RBP20.24■□□□□ 0.83
PTPRF-213ENST00000481019 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
PTPRF-213ENST00000481019 RANGAP1P46060 587 aaPredicted RBP20.23■□□□□ 0.83
PTPRF-213ENST00000481019 P3H3Q8IVL6 736 aa20.23■□□□□ 0.83
PTPRF-213ENST00000481019 SAMD9Q5K651 1589 aa20.22■□□□□ 0.83
PTPRF-213ENST00000481019 UACAQ9BZF9 1416 aa20.2■□□□□ 0.82
PTPRF-213ENST00000481019 UHRF1BP1LA0JNW5 1464 aa20.18■□□□□ 0.82
PTPRF-213ENST00000481019 PLB1Q6P1J6 1458 aa20.18■□□□□ 0.82
PTPRF-213ENST00000481019 ABCC2Q92887 1545 aa20.17■□□□□ 0.82
PTPRF-213ENST00000481019 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
PTPRF-213ENST00000481019 ABCA8O94911 1581 aa20.15■□□□□ 0.82
PTPRF-213ENST00000481019 MAPKBP1O60336 1514 aa20.14■□□□□ 0.81
PTPRF-213ENST00000481019 NPM1P06748 294 aaKnown RBP eCLIP20.13■□□□□ 0.81
PTPRF-213ENST00000481019 FHOD3Q2V2M9 1422 aa20.12■□□□□ 0.81
PTPRF-213ENST00000481019 KIF13AQ9H1H9 1805 aa20.11■□□□□ 0.81
PTPRF-213ENST00000481019 KDM5BQ9UGL1 1544 aa20.1■□□□□ 0.81
PTPRF-213ENST00000481019 ZCCHC11Q5TAX3 1644 aaKnown RBP20.09■□□□□ 0.81
PTPRF-213ENST00000481019 EFCAB5A4FU69 1503 aa20.07■□□□□ 0.8
PTPRF-213ENST00000481019 ABCC10Q5T3U5 1492 aa20.06■□□□□ 0.8
PTPRF-213ENST00000481019 DIP2BQ9P265 1576 aa20.06■□□□□ 0.8
PTPRF-213ENST00000481019 ASXL2Q76L83 1435 aa20.05■□□□□ 0.8
PTPRF-213ENST00000481019 ARHGAP35Q9NRY4 1499 aa20.05■□□□□ 0.8
PTPRF-213ENST00000481019 ARID3CA6NKF2 412 aa20.03■□□□□ 0.8
PTPRF-213ENST00000481019 FAM69CQ0P6D2 419 aa20.02■□□□□ 0.8
PTPRF-213ENST00000481019 RAPGEF6Q8TEU7 1601 aa20.02■□□□□ 0.79
PTPRF-213ENST00000481019 ATP10BO94823 1461 aa19.99■□□□□ 0.79
PTPRF-213ENST00000481019 NUP153P49790 1475 aaKnown RBP19.97■□□□□ 0.79
PTPRF-213ENST00000481019 EPRSP07814 1512 aaKnown RBP19.94■□□□□ 0.78
PTPRF-213ENST00000481019 LOC105371045A0A1W2PR82 267 aa19.94■□□□□ 0.78
PTPRF-213ENST00000481019 WDR7Q9Y4E6 1490 aa19.92■□□□□ 0.78
PTPRF-213ENST00000481019 GLI2P10070 1586 aa19.91■□□□□ 0.78
PTPRF-213ENST00000481019 TSPOAP1O95153 1857 aa19.9■□□□□ 0.78
PTPRF-213ENST00000481019 PPRC1Q5VV67 1664 aaKnown RBP19.88■□□□□ 0.77
PTPRF-213ENST00000481019 CLIP1P30622 1438 aa19.88■□□□□ 0.77
PTPRF-213ENST00000481019 KCNH8Q96L42 1107 aa19.86■□□□□ 0.77
PTPRF-213ENST00000481019 CDK13Q14004 1512 aaKnown RBP19.86■□□□□ 0.77
PTPRF-213ENST00000481019 FMN1Q68DA7 1419 aa19.85■□□□□ 0.77
PTPRF-213ENST00000481019 MAP3K4Q9Y6R4 1608 aa19.85■□□□□ 0.77
PTPRF-213ENST00000481019 LRRIQ1Q96JM4 1722 aa19.83■□□□□ 0.77
PTPRF-213ENST00000481019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-213ENST00000481019 HNRNPUL2Q1KMD3 747 aaKnown RBP19.82■□□□□ 0.76
PTPRF-213ENST00000481019 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
PTPRF-213ENST00000481019 PCF11O94913 1555 aaKnown RBP19.81■□□□□ 0.76
PTPRF-213ENST00000481019 ATP1B4Q9UN42 357 aaPredicted RBP19.8■□□□□ 0.76
PTPRF-213ENST00000481019 HECW1Q76N89 1606 aa19.8■□□□□ 0.76
PTPRF-213ENST00000481019 CASKIN1Q8WXD9 1431 aa19.76■□□□□ 0.75
PTPRF-213ENST00000481019 CFAP43Q8NDM7 1665 aa19.75■□□□□ 0.75
PTPRF-213ENST00000481019 CD109Q6YHK3 1445 aa19.75■□□□□ 0.75
PTPRF-213ENST00000481019 ABCA9Q8IUA7 1624 aa19.73■□□□□ 0.75
PTPRF-213ENST00000481019 PLEKHD1A6NEE1 506 aa19.71■□□□□ 0.75
PTPRF-213ENST00000481019 COL17A1Q9UMD9 1497 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-213ENST00000481019 KDM6BO15054 1643 aa19.7■□□□□ 0.74
PTPRF-213ENST00000481019 MAGI3Q5TCQ9 1506 aa19.7■□□□□ 0.74
PTPRF-213ENST00000481019 FYCO1Q9BQS8 1478 aa19.69■□□□□ 0.74
PTPRF-213ENST00000481019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.67■□□□□ 0.74
PTPRF-213ENST00000481019 TTC37Q6PGP7 1564 aa19.67■□□□□ 0.74
PTPRF-213ENST00000481019 TEX14Q8IWB6 1497 aa19.67■□□□□ 0.74
PTPRF-213ENST00000481019 KIF14Q15058 1648 aa19.65■□□□□ 0.74
PTPRF-213ENST00000481019 CCDC18Q5T9S5 1454 aa19.63■□□□□ 0.73
PTPRF-213ENST00000481019 TROQ12816 1431 aaPredicted RBP19.62■□□□□ 0.73
PTPRF-213ENST00000481019 CDK11AQ9UQ88 783 aaPredicted RBP19.57■□□□□ 0.72
PTPRF-213ENST00000481019 VPS8Q8N3P4 1428 aa19.54■□□□□ 0.72
PTPRF-213ENST00000481019 ARAP3Q8WWN8 1544 aa19.54■□□□□ 0.72
PTPRF-213ENST00000481019 NEO1Q92859 1461 aa19.53■□□□□ 0.72
PTPRF-213ENST00000481019 PLCH2O75038 1416 aa19.52■□□□□ 0.72
PTPRF-213ENST00000481019 FANCAO15360 1455 aa19.51■□□□□ 0.71
PTPRF-213ENST00000481019 MYO5CQ9NQX4 1742 aa19.51■□□□□ 0.71
PTPRF-213ENST00000481019 AKNAQ7Z591 1439 aa19.5■□□□□ 0.71
PTPRF-213ENST00000481019 FRMPD1Q5SYB0 1578 aa19.49■□□□□ 0.71
PTPRF-213ENST00000481019 RAPGEF3O95398 923 aa19.49■□□□□ 0.71
PTPRF-213ENST00000481019 CDC42BPBQ9Y5S2 1711 aa19.47■□□□□ 0.71
PTPRF-213ENST00000481019 PHLDB1Q86UU1 1377 aa19.46■□□□□ 0.71
PTPRF-213ENST00000481019 TIAM1Q13009 1591 aa19.45■□□□□ 0.7
PTPRF-213ENST00000481019 CFAP74Q9C0B2 1584 aa19.45■□□□□ 0.7
PTPRF-213ENST00000481019 CDC42BPAQ5VT25 1732 aa19.45■□□□□ 0.7
PTPRF-213ENST00000481019 PREX2Q70Z35 1606 aa19.44■□□□□ 0.7
PTPRF-213ENST00000481019 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
PTPRF-213ENST00000481019 RICTORQ6R327 1708 aa19.43■□□□□ 0.7
PTPRF-213ENST00000481019 ARHGAP5Q13017 1502 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms