RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 HMMRO75330 724 aa7.02□□□□□ -1.29
USF3-202ENST00000478658 CNGB1Q14028 1251 aaPredicted RBP7.01□□□□□ -1.29
USF3-202ENST00000478658 CHMP4AQ9BY43 222 aa7.01□□□□□ -1.29
USF3-202ENST00000478658 DNTTIP2Q5QJE6 756 aaKnown RBP7.01□□□□□ -1.29
USF3-202ENST00000478658 CLSTN1O94985 981 aa7.01□□□□□ -1.29
USF3-202ENST00000478658 HTATSF1O43719 755 aaKnown RBP7□□□□□ -1.29
USF3-202ENST00000478658 E9PSI1 815 aa7□□□□□ -1.29
USF3-202ENST00000478658 RRP12Q5JTH9 1297 aaKnown RBP7□□□□□ -1.29
USF3-202ENST00000478658 NPHP1O15259 732 aa7□□□□□ -1.29
USF3-202ENST00000478658 RDXP35241 583 aaKnown RBP6.98□□□□□ -1.29
USF3-202ENST00000478658 HSP90B1P14625 803 aaKnown RBP6.98□□□□□ -1.29
USF3-202ENST00000478658 FOXD1Q16676 465 aa6.98□□□□□ -1.29
USF3-202ENST00000478658 AEBP2Q6ZN18 517 aaPredicted RBP6.98□□□□□ -1.29
USF3-202ENST00000478658 SHROOM4Q9ULL8 1493 aa6.98□□□□□ -1.29
USF3-202ENST00000478658 CHMP4CQ96CF2 233 aa6.97□□□□□ -1.29
USF3-202ENST00000478658 TRIM52Q96A61 297 aa6.96□□□□□ -1.29
USF3-202ENST00000478658 MS4A1P11836 297 aa6.96□□□□□ -1.3
USF3-202ENST00000478658 CCDC70Q6NSX1 233 aa6.96□□□□□ -1.3
USF3-202ENST00000478658 STK11IPQ8N1F8 1099 aa6.96□□□□□ -1.3
USF3-202ENST00000478658 DCAF8L1A6NGE4 600 aa6.95□□□□□ -1.3
USF3-202ENST00000478658 TNNT3P45378 269 aaPredicted RBP6.95□□□□□ -1.3
USF3-202ENST00000478658 ZRSR2Q15696 482 aaKnown RBP6.95□□□□□ -1.3
USF3-202ENST00000478658 PHF14O94880 888 aa6.94□□□□□ -1.3
USF3-202ENST00000478658 NPM1P06748 294 aaKnown RBP eCLIP6.94□□□□□ -1.3
USF3-202ENST00000478658 FEZ1Q99689 392 aa6.94□□□□□ -1.3
USF3-202ENST00000478658 LAS1LQ9Y4W2 734 aaKnown RBP6.94□□□□□ -1.3
USF3-202ENST00000478658 NEXNQ0ZGT2 675 aa6.94□□□□□ -1.3
USF3-202ENST00000478658 CDR1P51861 262 aa6.93□□□□□ -1.3
USF3-202ENST00000478658 MCCP23508 829 aa6.92□□□□□ -1.3
USF3-202ENST00000478658 CAGE1Q8TC20 777 aa6.92□□□□□ -1.3
USF3-202ENST00000478658 CCDC112Q8NEF3 446 aa6.91□□□□□ -1.3
USF3-202ENST00000478658 GPS2Q13227 327 aa6.91□□□□□ -1.3
USF3-202ENST00000478658 HDAC5Q9UQL6 1122 aa6.91□□□□□ -1.3
USF3-202ENST00000478658 CSPP1Q1MSJ5 1256 aa6.91□□□□□ -1.3
USF3-202ENST00000478658 FGD1P98174 961 aa6.9□□□□□ -1.31
USF3-202ENST00000478658 WDR43Q15061 677 aaKnown RBP eCLIP6.9□□□□□ -1.31
USF3-202ENST00000478658 PPARGC1BQ86YN6 1023 aaKnown RBP6.9□□□□□ -1.31
USF3-202ENST00000478658 NCBP3Q53F19 620 aaKnown RBP6.89□□□□□ -1.31
USF3-202ENST00000478658 TPM2P07951 284 aa6.89□□□□□ -1.31
USF3-202ENST00000478658 GNL2Q13823 731 aaKnown RBP6.89□□□□□ -1.31
USF3-202ENST00000478658 SYAP1Q96A49 352 aaPredicted RBP6.89□□□□□ -1.31
USF3-202ENST00000478658 CNKSR2Q8WXI2 1034 aa6.89□□□□□ -1.31
USF3-202ENST00000478658 CDCA8Q53HL2 280 aa6.88□□□□□ -1.31
USF3-202ENST00000478658 MYO6Q9UM54 1294 aa6.88□□□□□ -1.31
USF3-202ENST00000478658 TULP1O00294 542 aaPredicted RBP6.88□□□□□ -1.31
USF3-202ENST00000478658 WWC1Q8IX03 1113 aa6.88□□□□□ -1.31
USF3-202ENST00000478658 BCL11AQ9H165 835 aa6.87□□□□□ -1.31
USF3-202ENST00000478658 MSNP26038 577 aaKnown RBP6.87□□□□□ -1.31
USF3-202ENST00000478658 TPM3P06753 285 aa6.86□□□□□ -1.31
USF3-202ENST00000478658 ITGAEP38570 1179 aa6.86□□□□□ -1.31
USF3-202ENST00000478658 DCTN1Q14203 1278 aa6.86□□□□□ -1.31
USF3-202ENST00000478658 FAM50AQ14320 339 aaKnown RBP6.86□□□□□ -1.31
USF3-202ENST00000478658 TSR1Q2NL82 804 aaKnown RBP6.86□□□□□ -1.31
USF3-202ENST00000478658 CFAP53Q96M91 514 aa6.86□□□□□ -1.31
USF3-202ENST00000478658 KIF3AQ9Y496 699 aa6.86□□□□□ -1.31
USF3-202ENST00000478658 HMGB2P26583 209 aaKnown RBP6.85□□□□□ -1.31
USF3-202ENST00000478658 SCAF1Q9H7N4 1312 aaKnown RBP6.85□□□□□ -1.31
USF3-202ENST00000478658 NEFHP12036 1026 aa6.85□□□□□ -1.31
USF3-202ENST00000478658 WASHC2AQ641Q2 1341 aa6.85□□□□□ -1.31
USF3-202ENST00000478658 ANKRD18AQ8IVF6 992 aa6.85□□□□□ -1.31
USF3-202ENST00000478658 DEF6Q9H4E7 631 aa6.85□□□□□ -1.31
USF3-202ENST00000478658 NOM1Q5C9Z4 860 aaKnown RBP6.85□□□□□ -1.31
USF3-202ENST00000478658 CCDC136Q96JN2 1154 aa6.85□□□□□ -1.31
USF3-202ENST00000478658 A0A0G2JS52 829 aa6.84□□□□□ -1.31
USF3-202ENST00000478658 DNAI2Q9GZS0 605 aa6.84□□□□□ -1.31
USF3-202ENST00000478658 HMGN5P82970 282 aaKnown RBP6.84□□□□□ -1.32
USF3-202ENST00000478658 GOLGA6L3A6NEY3 463 aa6.83□□□□□ -1.32
USF3-202ENST00000478658 TPM1P09493 284 aa6.83□□□□□ -1.32
USF3-202ENST00000478658 PPM1GO15355 546 aaPredicted RBP6.83□□□□□ -1.32
USF3-202ENST00000478658 TCEAL9Q9UHQ7 104 aa6.83□□□□□ -1.32
USF3-202ENST00000478658 DRC7Q8IY82 874 aa6.83□□□□□ -1.32
USF3-202ENST00000478658 CCDC191Q8NCU4 936 aa6.83□□□□□ -1.32
USF3-202ENST00000478658 HDGFP51858 240 aaKnown RBP6.82□□□□□ -1.32
USF3-202ENST00000478658 KCNJ4P48050 445 aa6.82□□□□□ -1.32
USF3-202ENST00000478658 CALD1Q05682 793 aaKnown RBP6.82□□□□□ -1.32
USF3-202ENST00000478658 WWC2Q6AWC2 1192 aa6.82□□□□□ -1.32
USF3-202ENST00000478658 INCENPQ9NQS7 918 aa6.81□□□□□ -1.32
USF3-202ENST00000478658 EIF3DO15371 548 aaKnown RBP eCLIP6.81□□□□□ -1.32
USF3-202ENST00000478658 C14orf37Q86TY3 774 aa6.81□□□□□ -1.32
USF3-202ENST00000478658 GPATCH3Q96I76 525 aa6.81□□□□□ -1.32
USF3-202ENST00000478658 TRIM21P19474 475 aaKnown RBP6.81□□□□□ -1.32
USF3-202ENST00000478658 NF2P35240 595 aa6.81□□□□□ -1.32
USF3-202ENST00000478658 ZNF710Q8N1W2 664 aa6.8□□□□□ -1.32
USF3-202ENST00000478658 ACBD3Q9H3P7 528 aa6.8□□□□□ -1.32
USF3-202ENST00000478658 ARGLU1Q9NWB6 273 aaPredicted RBP6.79□□□□□ -1.32
USF3-202ENST00000478658 LRRFIP1Q32MZ4 808 aaKnown RBP6.79□□□□□ -1.32
USF3-202ENST00000478658 PDCL3Q9H2J4 239 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 GTF3C3Q9Y5Q9 886 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 VGFO15240 615 aaPredicted RBP6.78□□□□□ -1.32
USF3-202ENST00000478658 MAP7D2Q96T17 732 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 SUPT16HQ9Y5B9 1047 aaKnown RBP6.78□□□□□ -1.32
USF3-202ENST00000478658 HRCP23327 699 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 AK7Q96M32 723 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 TEX35Q5T0J7 233 aa6.78□□□□□ -1.32
USF3-202ENST00000478658 FTSJ3Q8IY81 847 aaKnown RBP6.78□□□□□ -1.32
USF3-202ENST00000478658 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.78□□□□□ -1.32
USF3-202ENST00000478658 OS9Q13438 667 aaPredicted RBP6.77□□□□□ -1.32
USF3-202ENST00000478658 CCDC47Q96A33 483 aaKnown RBP6.77□□□□□ -1.32
USF3-202ENST00000478658 NAP1L2Q9ULW6 460 aaPredicted RBP6.77□□□□□ -1.33
USF3-202ENST00000478658 DESP17661 470 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms