RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CUL7Q14999 1698 aa18.66■□□□□ 0.58
PTPRF-212ENST00000477970 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
PTPRF-212ENST00000477970 ARHGAP35Q9NRY4 1499 aa18.64■□□□□ 0.58
PTPRF-212ENST00000477970 ADAMTS12P58397 1594 aa18.63■□□□□ 0.57
PTPRF-212ENST00000477970 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
PTPRF-212ENST00000477970 CARMIL1Q5VZK9 1371 aa18.62■□□□□ 0.57
PTPRF-212ENST00000477970 MAP3K1Q13233 1512 aa18.61■□□□□ 0.57
PTPRF-212ENST00000477970 APLP2Q06481 763 aa18.59■□□□□ 0.57
PTPRF-212ENST00000477970 OSCARQ8IYS5 282 aa18.58■□□□□ 0.57
PTPRF-212ENST00000477970 CLASP1Q7Z460 1538 aa18.57■□□□□ 0.56
PTPRF-212ENST00000477970 CCER1Q8TC90 406 aaPredicted RBP18.56■□□□□ 0.56
PTPRF-212ENST00000477970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.54■□□□□ 0.56
PTPRF-212ENST00000477970 CTTNBP2Q8WZ74 1663 aa18.53■□□□□ 0.56
PTPRF-212ENST00000477970 EFCAB5A4FU69 1503 aa18.52■□□□□ 0.55
PTPRF-212ENST00000477970 FHAD1B1AJZ9 1412 aa18.51■□□□□ 0.55
PTPRF-212ENST00000477970 RRBP1Q9P2E9 1410 aaKnown RBP18.49■□□□□ 0.55
PTPRF-212ENST00000477970 GRIN2AQ12879 1464 aa18.49■□□□□ 0.55
PTPRF-212ENST00000477970 TTBK1Q5TCY1 1321 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-212ENST00000477970 TIAM1Q13009 1591 aa18.47■□□□□ 0.55
PTPRF-212ENST00000477970 CFAP43Q8NDM7 1665 aa18.47■□□□□ 0.55
PTPRF-212ENST00000477970 RIMBP3CA6NJZ7 1639 aa18.46■□□□□ 0.55
PTPRF-212ENST00000477970 RIMBP3BA6NNM3 1639 aa18.46■□□□□ 0.55
PTPRF-212ENST00000477970 RIMBP3Q9UFD9 1639 aa18.46■□□□□ 0.55
PTPRF-212ENST00000477970 NUP160Q12769 1436 aa18.44■□□□□ 0.54
PTPRF-212ENST00000477970 CEP170Q5SW79 1584 aa18.43■□□□□ 0.54
PTPRF-212ENST00000477970 SHROOM2Q13796 1616 aa18.43■□□□□ 0.54
PTPRF-212ENST00000477970 ARHGEF11O15085 1522 aa18.41■□□□□ 0.54
PTPRF-212ENST00000477970 RANGAP1P46060 587 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-212ENST00000477970 CHMP7Q8WUX9 453 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-212ENST00000477970 KANK4Q5T7N3 995 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-212ENST00000477970 PCF11O94913 1555 aaKnown RBP18.37■□□□□ 0.53
PTPRF-212ENST00000477970 FYCO1Q9BQS8 1478 aa18.37■□□□□ 0.53
PTPRF-212ENST00000477970 SAMD9Q5K651 1589 aa18.37■□□□□ 0.53
PTPRF-212ENST00000477970 LRRC9Q6ZRR7 1453 aa18.34■□□□□ 0.53
PTPRF-212ENST00000477970 CLSPNQ9HAW4 1339 aa18.34■□□□□ 0.53
PTPRF-212ENST00000477970 FBLN2P98095 1184 aa18.32■□□□□ 0.52
PTPRF-212ENST00000477970 CASKIN1Q8WXD9 1431 aa18.32■□□□□ 0.52
PTPRF-212ENST00000477970 CCNB3Q8WWL7 1395 aa18.31■□□□□ 0.52
PTPRF-212ENST00000477970 HNRNPUL2Q1KMD3 747 aaKnown RBP18.3■□□□□ 0.52
PTPRF-212ENST00000477970 FMN1Q68DA7 1419 aa18.28■□□□□ 0.52
PTPRF-212ENST00000477970 KIAA0586Q9BVV6 1533 aa18.24■□□□□ 0.51
PTPRF-212ENST00000477970 FHOD3Q2V2M9 1422 aa18.24■□□□□ 0.51
PTPRF-212ENST00000477970 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.22■□□□□ 0.51
PTPRF-212ENST00000477970 DHX57Q6P158 1386 aaKnown RBP18.21■□□□□ 0.5
PTPRF-212ENST00000477970 IQGAP2Q13576 1575 aa18.17■□□□□ 0.5
PTPRF-212ENST00000477970 LRRIQ1Q96JM4 1722 aa18.16■□□□□ 0.5
PTPRF-212ENST00000477970 ERCC6L2Q5T890 1561 aa18.16■□□□□ 0.5
PTPRF-212ENST00000477970 PHLDB1Q86UU1 1377 aa18.15■□□□□ 0.5
PTPRF-212ENST00000477970 UGGT2Q9NYU1 1516 aa18.11■□□□□ 0.49
PTPRF-212ENST00000477970 ZNF316A6NFI3 1004 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-212ENST00000477970 PRG4Q92954 1404 aaPredicted RBP18.09■□□□□ 0.49
PTPRF-212ENST00000477970 CCDC18Q5T9S5 1454 aa18.09■□□□□ 0.49
PTPRF-212ENST00000477970 EHBP1L1Q8N3D4 1523 aa18.09■□□□□ 0.49
PTPRF-212ENST00000477970 HECW1Q76N89 1606 aa18.08■□□□□ 0.48
PTPRF-212ENST00000477970 SUPT6HQ7KZ85 1726 aaKnown RBP18.07■□□□□ 0.48
PTPRF-212ENST00000477970 JPH4Q96JJ6 628 aa18.06■□□□□ 0.48
PTPRF-212ENST00000477970 DIEXFQ68CQ4 756 aaKnown RBP18.06■□□□□ 0.48
PTPRF-212ENST00000477970 SETD5Q9C0A6 1442 aa18.05■□□□□ 0.48
PTPRF-212ENST00000477970 P3H3Q8IVL6 736 aa18.05■□□□□ 0.48
PTPRF-212ENST00000477970 RAB3GAP2Q9H2M9 1393 aa18.03■□□□□ 0.48
PTPRF-212ENST00000477970 FGD6Q6ZV73 1430 aa18.02■□□□□ 0.48
PTPRF-212ENST00000477970 KIAA0556O60303 1618 aa18.02■□□□□ 0.48
PTPRF-212ENST00000477970 DISP1Q96F81 1524 aa18.01■□□□□ 0.47
PTPRF-212ENST00000477970 MAPKBP1O60336 1514 aa18■□□□□ 0.47
PTPRF-212ENST00000477970 CARMIL2Q6F5E8 1435 aa17.99■□□□□ 0.47
PTPRF-212ENST00000477970 CYB5RLQ6IPT4 315 aa17.98■□□□□ 0.47
PTPRF-212ENST00000477970 NCOA2Q15596 1464 aa17.98■□□□□ 0.47
PTPRF-212ENST00000477970 MTUS2Q5JR59 1369 aa17.97■□□□□ 0.47
PTPRF-212ENST00000477970 MYOM3Q5VTT5 1437 aa17.97■□□□□ 0.47
PTPRF-212ENST00000477970 ADCY10Q96PN6 1610 aa17.96■□□□□ 0.46
PTPRF-212ENST00000477970 TCOF1Q13428 1488 aaKnown RBP17.95■□□□□ 0.46
PTPRF-212ENST00000477970 MAGI3Q5TCQ9 1506 aa17.94■□□□□ 0.46
PTPRF-212ENST00000477970 EPRSP07814 1512 aaKnown RBP17.93■□□□□ 0.46
PTPRF-212ENST00000477970 UHRF1BP1LA0JNW5 1464 aa17.93■□□□□ 0.46
PTPRF-212ENST00000477970 PTPN23Q9H3S7 1636 aa17.92■□□□□ 0.46
PTPRF-212ENST00000477970 ATP1B4Q9UN42 357 aaPredicted RBP17.9■□□□□ 0.46
PTPRF-212ENST00000477970 HFM1A2PYH4 1435 aa17.9■□□□□ 0.46
PTPRF-212ENST00000477970 FAM50AQ14320 339 aaKnown RBP17.88■□□□□ 0.45
PTPRF-212ENST00000477970 MIA2Q96PC5 1412 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 RAPGEF6Q8TEU7 1601 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 AKNAQ7Z591 1439 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 PTPRGP23470 1445 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 TIMELESSQ9UNS1 1208 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 GCC2Q8IWJ2 1684 aa17.86■□□□□ 0.45
PTPRF-212ENST00000477970 ABCC2Q92887 1545 aa17.85■□□□□ 0.45
PTPRF-212ENST00000477970 ITGAEP38570 1179 aa17.85■□□□□ 0.45
PTPRF-212ENST00000477970 ABCA8O94911 1581 aa17.84■□□□□ 0.45
PTPRF-212ENST00000477970 KIF13AQ9H1H9 1805 aa17.83■□□□□ 0.45
PTPRF-212ENST00000477970 PTPRKQ15262 1439 aa17.82■□□□□ 0.44
PTPRF-212ENST00000477970 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
PTPRF-212ENST00000477970 CDK13Q14004 1512 aaKnown RBP17.81■□□□□ 0.44
PTPRF-212ENST00000477970 NUP153P49790 1475 aaKnown RBP17.79■□□□□ 0.44
PTPRF-212ENST00000477970 NAIPQ13075 1403 aa17.79■□□□□ 0.44
PTPRF-212ENST00000477970 KDM5BQ9UGL1 1544 aa17.79■□□□□ 0.44
PTPRF-212ENST00000477970 ZCCHC11Q5TAX3 1644 aaKnown RBP17.78■□□□□ 0.44
PTPRF-212ENST00000477970 DIP2BQ9P265 1576 aa17.75■□□□□ 0.43
PTPRF-212ENST00000477970 ACIN1Q9UKV3 1341 aaKnown RBP17.74■□□□□ 0.43
PTPRF-212ENST00000477970 CENPBP07199 599 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-212ENST00000477970 GLI2P10070 1586 aa17.72■□□□□ 0.43
PTPRF-212ENST00000477970 ABCC10Q5T3U5 1492 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms