RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 VPS8Q8N3P4 1428 aa22.78■■□□□ 1.24
COL4A6-206ENST00000477085 SYNJ2O15056 1496 aa22.76■■□□□ 1.23
COL4A6-206ENST00000477085 GRIN2AQ12879 1464 aa22.76■■□□□ 1.23
COL4A6-206ENST00000477085 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
COL4A6-206ENST00000477085 CHMP7Q8WUX9 453 aaPredicted RBP22.73■■□□□ 1.23
COL4A6-206ENST00000477085 FBLN2P98095 1184 aa22.7■■□□□ 1.22
COL4A6-206ENST00000477085 P3H3Q8IVL6 736 aa22.7■■□□□ 1.22
COL4A6-206ENST00000477085 CEP170Q5SW79 1584 aa22.65■■□□□ 1.22
COL4A6-206ENST00000477085 EFCAB5A4FU69 1503 aa22.65■■□□□ 1.22
COL4A6-206ENST00000477085 IQGAP2Q13576 1575 aa22.64■■□□□ 1.22
COL4A6-206ENST00000477085 KIAA0586Q9BVV6 1533 aa22.64■■□□□ 1.21
COL4A6-206ENST00000477085 FHOD3Q2V2M9 1422 aa22.64■■□□□ 1.21
COL4A6-206ENST00000477085 SAMD9Q5K651 1589 aa22.63■■□□□ 1.21
COL4A6-206ENST00000477085 NUP160Q12769 1436 aa22.62■■□□□ 1.21
COL4A6-206ENST00000477085 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.21
COL4A6-206ENST00000477085 TRIM26Q12899 539 aaPredicted RBP22.57■■□□□ 1.2
COL4A6-206ENST00000477085 UGGT2Q9NYU1 1516 aa22.56■■□□□ 1.2
COL4A6-206ENST00000477085 TTBK1Q5TCY1 1321 aaPredicted RBP22.53■■□□□ 1.2
COL4A6-206ENST00000477085 CHD1O14646 1710 aa22.52■■□□□ 1.2
COL4A6-206ENST00000477085 DISP1Q96F81 1524 aa22.51■■□□□ 1.19
COL4A6-206ENST00000477085 APLP2Q06481 763 aa22.48■■□□□ 1.19
COL4A6-206ENST00000477085 JPH4Q96JJ6 628 aa22.48■■□□□ 1.19
COL4A6-206ENST00000477085 PCF11O94913 1555 aaKnown RBP22.47■■□□□ 1.19
COL4A6-206ENST00000477085 KANK4Q5T7N3 995 aaPredicted RBP22.47■■□□□ 1.19
COL4A6-206ENST00000477085 FMN1Q68DA7 1419 aa22.46■■□□□ 1.19
COL4A6-206ENST00000477085 CASKIN1Q8WXD9 1431 aa22.44■■□□□ 1.18
COL4A6-206ENST00000477085 KIAA0556O60303 1618 aa22.43■■□□□ 1.18
COL4A6-206ENST00000477085 FYCO1Q9BQS8 1478 aa22.4■■□□□ 1.18
COL4A6-206ENST00000477085 ATP1B4Q9UN42 357 aaPredicted RBP22.38■■□□□ 1.17
COL4A6-206ENST00000477085 MAP3K1Q13233 1512 aa22.38■■□□□ 1.17
COL4A6-206ENST00000477085 TIAM1Q13009 1591 aa22.36■■□□□ 1.17
COL4A6-206ENST00000477085 CARMIL2Q6F5E8 1435 aa22.31■■□□□ 1.16
COL4A6-206ENST00000477085 PRG4Q92954 1404 aaPredicted RBP22.31■■□□□ 1.16
COL4A6-206ENST00000477085 CLASP1Q7Z460 1538 aa22.3■■□□□ 1.16
COL4A6-206ENST00000477085 LRRIQ1Q96JM4 1722 aa22.3■■□□□ 1.16
COL4A6-206ENST00000477085 SHROOM2Q13796 1616 aa22.3■■□□□ 1.16
COL4A6-206ENST00000477085 LRRC9Q6ZRR7 1453 aa22.29■■□□□ 1.16
COL4A6-206ENST00000477085 CFAP43Q8NDM7 1665 aa22.29■■□□□ 1.16
COL4A6-206ENST00000477085 ERCC6L2Q5T890 1561 aa22.23■■□□□ 1.15
COL4A6-206ENST00000477085 PLB1Q6P1J6 1458 aa22.22■■□□□ 1.15
COL4A6-206ENST00000477085 HECW1Q76N89 1606 aa22.21■■□□□ 1.15
COL4A6-206ENST00000477085 EPRSP07814 1512 aaKnown RBP22.2■■□□□ 1.14
COL4A6-206ENST00000477085 NUP153P49790 1475 aaKnown RBP22.2■■□□□ 1.14
COL4A6-206ENST00000477085 RAPGEF6Q8TEU7 1601 aa22.19■■□□□ 1.14
COL4A6-206ENST00000477085 ARID3CA6NKF2 412 aa22.18■■□□□ 1.14
COL4A6-206ENST00000477085 CDK13Q14004 1512 aaKnown RBP22.17■■□□□ 1.14
COL4A6-206ENST00000477085 MAGI3Q5TCQ9 1506 aa22.16■■□□□ 1.14
COL4A6-206ENST00000477085 CCDC18Q5T9S5 1454 aa22.16■■□□□ 1.14
COL4A6-206ENST00000477085 PTPRGP23470 1445 aa22.16■■□□□ 1.14
COL4A6-206ENST00000477085 OSCARQ8IYS5 282 aa22.14■■□□□ 1.13
COL4A6-206ENST00000477085 ABCA8O94911 1581 aa22.14■■□□□ 1.13
COL4A6-206ENST00000477085 PHLDB1Q86UU1 1377 aa22.13■■□□□ 1.13
COL4A6-206ENST00000477085 MTUS2Q5JR59 1369 aa22.11■■□□□ 1.13
COL4A6-206ENST00000477085 RRBP1Q9P2E9 1410 aaKnown RBP22.1■■□□□ 1.13
COL4A6-206ENST00000477085 EHBP1L1Q8N3D4 1523 aa22.05■■□□□ 1.12
COL4A6-206ENST00000477085 ATP10BO94823 1461 aa22.03■■□□□ 1.12
COL4A6-206ENST00000477085 CCNB3Q8WWL7 1395 aa22.03■■□□□ 1.12
COL4A6-206ENST00000477085 UACAQ9BZF9 1416 aa22.03■■□□□ 1.12
COL4A6-206ENST00000477085 NCOA2Q15596 1464 aa22.02■■□□□ 1.12
COL4A6-206ENST00000477085 ARHGEF11O15085 1522 aa22.01■■□□□ 1.11
COL4A6-206ENST00000477085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.01■■□□□ 1.11
COL4A6-206ENST00000477085 HNRNPUL2Q1KMD3 747 aaKnown RBP22.01■■□□□ 1.11
COL4A6-206ENST00000477085 SUPT6HQ7KZ85 1726 aaKnown RBP21.98■■□□□ 1.11
COL4A6-206ENST00000477085 CDK11AQ9UQ88 783 aaPredicted RBP21.95■■□□□ 1.1
COL4A6-206ENST00000477085 ABCC2Q92887 1545 aa21.94■■□□□ 1.1
COL4A6-206ENST00000477085 TROQ12816 1431 aaPredicted RBP21.94■■□□□ 1.1
COL4A6-206ENST00000477085 FGD6Q6ZV73 1430 aa21.92■■□□□ 1.1
COL4A6-206ENST00000477085 MYOM3Q5VTT5 1437 aa21.92■■□□□ 1.1
COL4A6-206ENST00000477085 UHRF1BP1LA0JNW5 1464 aa21.89■■□□□ 1.1
COL4A6-206ENST00000477085 PLEKHD1A6NEE1 506 aa21.89■■□□□ 1.09
COL4A6-206ENST00000477085 FAM50AQ14320 339 aaKnown RBP21.88■■□□□ 1.09
COL4A6-206ENST00000477085 ITGAEP38570 1179 aa21.86■■□□□ 1.09
COL4A6-206ENST00000477085 KIF14Q15058 1648 aa21.86■■□□□ 1.09
COL4A6-206ENST00000477085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.85■■□□□ 1.09
COL4A6-206ENST00000477085 HRCP23327 699 aa21.84■■□□□ 1.09
COL4A6-206ENST00000477085 ADCY10Q96PN6 1610 aa21.83■■□□□ 1.09
COL4A6-206ENST00000477085 KDM5BQ9UGL1 1544 aa21.83■■□□□ 1.09
COL4A6-206ENST00000477085 ZCCHC11Q5TAX3 1644 aaKnown RBP21.79■■□□□ 1.08
COL4A6-206ENST00000477085 MIA2Q96PC5 1412 aa21.79■■□□□ 1.08
COL4A6-206ENST00000477085 PTPN23Q9H3S7 1636 aa21.79■■□□□ 1.08
COL4A6-206ENST00000477085 ABCC10Q5T3U5 1492 aa21.79■■□□□ 1.08
COL4A6-206ENST00000477085 GPATCH8Q9UKJ3 1502 aaKnown RBP21.78■■□□□ 1.08
COL4A6-206ENST00000477085 TCOF1Q13428 1488 aaKnown RBP21.78■■□□□ 1.08
COL4A6-206ENST00000477085 PTPRKQ15262 1439 aa21.76■■□□□ 1.07
COL4A6-206ENST00000477085 ZNF644Q9H582 1327 aaPredicted RBP21.75■■□□□ 1.07
COL4A6-206ENST00000477085 CFDP1Q9UEE9 299 aaPredicted RBP21.69■■□□□ 1.06
COL4A6-206ENST00000477085 KCNH8Q96L42 1107 aa21.68■■□□□ 1.06
COL4A6-206ENST00000477085 CDC42BPAQ5VT25 1732 aa21.67■■□□□ 1.06
COL4A6-206ENST00000477085 CCER1Q8TC90 406 aaPredicted RBP21.67■■□□□ 1.06
COL4A6-206ENST00000477085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.67■■□□□ 1.06
COL4A6-206ENST00000477085 ITSN2Q9NZM3 1697 aa21.65■■□□□ 1.06
COL4A6-206ENST00000477085 RIMBP3CA6NJZ7 1639 aa21.65■■□□□ 1.06
COL4A6-206ENST00000477085 RIMBP3BA6NNM3 1639 aa21.65■■□□□ 1.06
COL4A6-206ENST00000477085 RIMBP3Q9UFD9 1639 aa21.65■■□□□ 1.06
COL4A6-206ENST00000477085 TTC37Q6PGP7 1564 aa21.64■■□□□ 1.06
COL4A6-206ENST00000477085 CAMSAP2Q08AD1 1489 aa21.63■■□□□ 1.05
COL4A6-206ENST00000477085 SETD5Q9C0A6 1442 aa21.63■■□□□ 1.05
COL4A6-206ENST00000477085 ZNF777Q9ULD5 760 aaPredicted RBP21.62■■□□□ 1.05
COL4A6-206ENST00000477085 RAB3GAP2Q9H2M9 1393 aa21.62■■□□□ 1.05
COL4A6-206ENST00000477085 WDR7Q9Y4E6 1490 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms