RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 ERCC6L2Q5T890 1561 aa20.63■□□□□ 0.89
SYNE1-223ENST00000476519 KIAA0586Q9BVV6 1533 aa20.62■□□□□ 0.89
SYNE1-223ENST00000476519 CUL7Q14999 1698 aa20.58■□□□□ 0.89
SYNE1-223ENST00000476519 RUSC2Q8N2Y8 1516 aa20.54■□□□□ 0.88
SYNE1-223ENST00000476519 NPM1P06748 294 aaKnown RBP eCLIP20.48■□□□□ 0.87
SYNE1-223ENST00000476519 RAPGEF2Q9Y4G8 1499 aa20.45■□□□□ 0.86
SYNE1-223ENST00000476519 CARMIL2Q6F5E8 1435 aa20.43■□□□□ 0.86
SYNE1-223ENST00000476519 PTPRGP23470 1445 aa20.42■□□□□ 0.86
SYNE1-223ENST00000476519 TNIKQ9UKE5 1360 aa20.39■□□□□ 0.85
SYNE1-223ENST00000476519 IQGAP2Q13576 1575 aa20.34■□□□□ 0.85
SYNE1-223ENST00000476519 TTBK1Q5TCY1 1321 aaPredicted RBP20.32■□□□□ 0.84
SYNE1-223ENST00000476519 PRXQ9BXM0 1461 aa20.31■□□□□ 0.84
SYNE1-223ENST00000476519 CSRNP3Q8WYN3 585 aa20.31■□□□□ 0.84
SYNE1-223ENST00000476519 FAM69CQ0P6D2 419 aa20.3■□□□□ 0.84
SYNE1-223ENST00000476519 UGGT2Q9NYU1 1516 aa20.28■□□□□ 0.84
SYNE1-223ENST00000476519 MAPKBP1O60336 1514 aa20.27■□□□□ 0.84
SYNE1-223ENST00000476519 DISP1Q96F81 1524 aa20.27■□□□□ 0.84
SYNE1-223ENST00000476519 ABCC10Q5T3U5 1492 aa20.26■□□□□ 0.83
SYNE1-223ENST00000476519 ADCY10Q96PN6 1610 aa20.26■□□□□ 0.83
SYNE1-223ENST00000476519 UACAQ9BZF9 1416 aa20.24■□□□□ 0.83
SYNE1-223ENST00000476519 UHRF1BP1LA0JNW5 1464 aa20.23■□□□□ 0.83
SYNE1-223ENST00000476519 EEA1Q15075 1411 aa20.21■□□□□ 0.83
SYNE1-223ENST00000476519 ABCC2Q92887 1545 aa20.21■□□□□ 0.83
SYNE1-223ENST00000476519 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
SYNE1-223ENST00000476519 FAM9AQ8IZU1 332 aaPredicted RBP20.17■□□□□ 0.82
SYNE1-223ENST00000476519 PLB1Q6P1J6 1458 aa20.14■□□□□ 0.81
SYNE1-223ENST00000476519 KIAA0556O60303 1618 aa20.13■□□□□ 0.81
SYNE1-223ENST00000476519 ASXL2Q76L83 1435 aa20.12■□□□□ 0.81
SYNE1-223ENST00000476519 KDM5BQ9UGL1 1544 aa20.12■□□□□ 0.81
SYNE1-223ENST00000476519 KIF13AQ9H1H9 1805 aa20.11■□□□□ 0.81
SYNE1-223ENST00000476519 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
SYNE1-223ENST00000476519 DIP2BQ9P265 1576 aa20.11■□□□□ 0.81
SYNE1-223ENST00000476519 CTTNBP2Q8WZ74 1663 aa20.07■□□□□ 0.8
SYNE1-223ENST00000476519 P3H3Q8IVL6 736 aa20.04■□□□□ 0.8
SYNE1-223ENST00000476519 GLI2P10070 1586 aa20.01■□□□□ 0.79
SYNE1-223ENST00000476519 EPRSP07814 1512 aaKnown RBP19.99■□□□□ 0.79
SYNE1-223ENST00000476519 ABCA8O94911 1581 aa19.99■□□□□ 0.79
SYNE1-223ENST00000476519 AEBP2Q6ZN18 517 aaPredicted RBP19.96■□□□□ 0.79
SYNE1-223ENST00000476519 WDR7Q9Y4E6 1490 aa19.95■□□□□ 0.78
SYNE1-223ENST00000476519 KCNH8Q96L42 1107 aa19.94■□□□□ 0.78
SYNE1-223ENST00000476519 ZCCHC11Q5TAX3 1644 aaKnown RBP19.94■□□□□ 0.78
SYNE1-223ENST00000476519 RANGAP1P46060 587 aaPredicted RBP19.93■□□□□ 0.78
SYNE1-223ENST00000476519 UBTFP17480 764 aaKnown RBP19.91■□□□□ 0.78
SYNE1-223ENST00000476519 SAMD9Q5K651 1589 aa19.9■□□□□ 0.78
SYNE1-223ENST00000476519 KIF21BO75037 1637 aa19.9■□□□□ 0.78
SYNE1-223ENST00000476519 ATP10BO94823 1461 aa19.89■□□□□ 0.77
SYNE1-223ENST00000476519 ARID3CA6NKF2 412 aa19.88■□□□□ 0.77
SYNE1-223ENST00000476519 KDM6BO15054 1643 aa19.87■□□□□ 0.77
SYNE1-223ENST00000476519 TEX14Q8IWB6 1497 aa19.87■□□□□ 0.77
SYNE1-223ENST00000476519 TSPOAP1O95153 1857 aa19.87■□□□□ 0.77
SYNE1-223ENST00000476519 CD109Q6YHK3 1445 aa19.85■□□□□ 0.77
SYNE1-223ENST00000476519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
SYNE1-223ENST00000476519 HNRNPUL2Q1KMD3 747 aaKnown RBP19.84■□□□□ 0.77
SYNE1-223ENST00000476519 FHOD3Q2V2M9 1422 aa19.84■□□□□ 0.77
SYNE1-223ENST00000476519 MAP3K4Q9Y6R4 1608 aa19.83■□□□□ 0.76
SYNE1-223ENST00000476519 EHMT2Q96KQ7 1210 aa19.81■□□□□ 0.76
SYNE1-223ENST00000476519 MAGI3Q5TCQ9 1506 aa19.81■□□□□ 0.76
SYNE1-223ENST00000476519 PPRC1Q5VV67 1664 aaKnown RBP19.8■□□□□ 0.76
SYNE1-223ENST00000476519 EFCAB5A4FU69 1503 aa19.8■□□□□ 0.76
SYNE1-223ENST00000476519 COL17A1Q9UMD9 1497 aaPredicted RBP19.79■□□□□ 0.76
SYNE1-223ENST00000476519 PLEKHD1A6NEE1 506 aa19.79■□□□□ 0.76
SYNE1-223ENST00000476519 NUP153P49790 1475 aaKnown RBP19.77■□□□□ 0.76
SYNE1-223ENST00000476519 RAPGEF6Q8TEU7 1601 aa19.76■□□□□ 0.75
SYNE1-223ENST00000476519 PHLDB1Q86UU1 1377 aa19.73■□□□□ 0.75
SYNE1-223ENST00000476519 KDM4FA0A1W2PPD8 638 aa19.73■□□□□ 0.75
SYNE1-223ENST00000476519 CFAP43Q8NDM7 1665 aa19.71■□□□□ 0.75
SYNE1-223ENST00000476519 FMN1Q68DA7 1419 aa19.7■□□□□ 0.74
SYNE1-223ENST00000476519 ARHGAP35Q9NRY4 1499 aa19.67■□□□□ 0.74
SYNE1-223ENST00000476519 ATP1B4Q9UN42 357 aaPredicted RBP19.66■□□□□ 0.74
SYNE1-223ENST00000476519 CDK11AQ9UQ88 783 aaPredicted RBP19.65■□□□□ 0.74
SYNE1-223ENST00000476519 ARAP3Q8WWN8 1544 aa19.65■□□□□ 0.74
SYNE1-223ENST00000476519 ABCA9Q8IUA7 1624 aa19.64■□□□□ 0.73
SYNE1-223ENST00000476519 NEO1Q92859 1461 aa19.61■□□□□ 0.73
SYNE1-223ENST00000476519 RAPGEF3O95398 923 aa19.58■□□□□ 0.72
SYNE1-223ENST00000476519 CDK13Q14004 1512 aaKnown RBP19.54■□□□□ 0.72
SYNE1-223ENST00000476519 ADGRL1O94910 1474 aa19.53■□□□□ 0.72
SYNE1-223ENST00000476519 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
SYNE1-223ENST00000476519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.51■□□□□ 0.71
SYNE1-223ENST00000476519 HECW1Q76N89 1606 aa19.51■□□□□ 0.71
SYNE1-223ENST00000476519 CASKIN1Q8WXD9 1431 aa19.51■□□□□ 0.71
SYNE1-223ENST00000476519 PLCH2O75038 1416 aa19.5■□□□□ 0.71
SYNE1-223ENST00000476519 FANCAO15360 1455 aa19.49■□□□□ 0.71
SYNE1-223ENST00000476519 EFCAB2Q5VUJ9 269 aa19.49■□□□□ 0.71
SYNE1-223ENST00000476519 CLIP1P30622 1438 aa19.49■□□□□ 0.71
SYNE1-223ENST00000476519 TROQ12816 1431 aaPredicted RBP19.48■□□□□ 0.71
SYNE1-223ENST00000476519 DENND4BO75064 1496 aaPredicted RBP19.48■□□□□ 0.71
SYNE1-223ENST00000476519 CCDC18Q5T9S5 1454 aa19.42■□□□□ 0.7
SYNE1-223ENST00000476519 TTC37Q6PGP7 1564 aa19.42■□□□□ 0.7
SYNE1-223ENST00000476519 SCAPERQ9BY12 1400 aa19.4■□□□□ 0.7
SYNE1-223ENST00000476519 CFAP74Q9C0B2 1584 aa19.4■□□□□ 0.7
SYNE1-223ENST00000476519 ARID4BQ4LE39 1312 aaPredicted RBP19.38■□□□□ 0.69
SYNE1-223ENST00000476519 FYCO1Q9BQS8 1478 aa19.38■□□□□ 0.69
SYNE1-223ENST00000476519 MAGI2Q86UL8 1455 aa19.36■□□□□ 0.69
SYNE1-223ENST00000476519 FRMPD1Q5SYB0 1578 aa19.36■□□□□ 0.69
SYNE1-223ENST00000476519 KIF14Q15058 1648 aa19.35■□□□□ 0.69
SYNE1-223ENST00000476519 PCF11O94913 1555 aaKnown RBP19.33■□□□□ 0.69
SYNE1-223ENST00000476519 POGZQ7Z3K3 1410 aa19.33■□□□□ 0.68
SYNE1-223ENST00000476519 AFAP1Q8N556 730 aa19.31■□□□□ 0.68
SYNE1-223ENST00000476519 ZMYM4Q5VZL5 1548 aa19.3■□□□□ 0.68
SYNE1-223ENST00000476519 ARHGAP5Q13017 1502 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms