RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 IGF1RP08069 1367 aa19.69■□□□□ 0.74
HLA-DOB-208ENST00000475235 CUL7Q14999 1698 aa19.63■□□□□ 0.73
HLA-DOB-208ENST00000475235 SHROOM2Q13796 1616 aa19.59■□□□□ 0.73
HLA-DOB-208ENST00000475235 CARMIL1Q5VZK9 1371 aa19.58■□□□□ 0.73
HLA-DOB-208ENST00000475235 JPH4Q96JJ6 628 aa19.57■□□□□ 0.72
HLA-DOB-208ENST00000475235 RUSC2Q8N2Y8 1516 aa19.55■□□□□ 0.72
HLA-DOB-208ENST00000475235 ERCC6L2Q5T890 1561 aa19.55■□□□□ 0.72
HLA-DOB-208ENST00000475235 PRG4Q92954 1404 aaPredicted RBP19.54■□□□□ 0.72
HLA-DOB-208ENST00000475235 KIAA0586Q9BVV6 1533 aa19.54■□□□□ 0.72
HLA-DOB-208ENST00000475235 TRHP20396 242 aaPredicted RBP19.48■□□□□ 0.71
HLA-DOB-208ENST00000475235 RAPGEF2Q9Y4G8 1499 aa19.45■□□□□ 0.7
HLA-DOB-208ENST00000475235 IQGAP2Q13576 1575 aa19.36■□□□□ 0.69
HLA-DOB-208ENST00000475235 CARMIL2Q6F5E8 1435 aa19.36■□□□□ 0.69
HLA-DOB-208ENST00000475235 MYT1Q01538 1121 aa19.35■□□□□ 0.69
HLA-DOB-208ENST00000475235 PRXQ9BXM0 1461 aa19.32■□□□□ 0.68
HLA-DOB-208ENST00000475235 NPM1P06748 294 aaKnown RBP eCLIP19.3■□□□□ 0.68
HLA-DOB-208ENST00000475235 PTPRGP23470 1445 aa19.3■□□□□ 0.68
HLA-DOB-208ENST00000475235 TNIKQ9UKE5 1360 aa19.3■□□□□ 0.68
HLA-DOB-208ENST00000475235 EEA1Q15075 1411 aa19.28■□□□□ 0.68
HLA-DOB-208ENST00000475235 UGGT2Q9NYU1 1516 aa19.26■□□□□ 0.67
HLA-DOB-208ENST00000475235 CSRNP3Q8WYN3 585 aa19.26■□□□□ 0.67
HLA-DOB-208ENST00000475235 DISP1Q96F81 1524 aa19.24■□□□□ 0.67
HLA-DOB-208ENST00000475235 ADCY10Q96PN6 1610 aa19.22■□□□□ 0.67
HLA-DOB-208ENST00000475235 TTBK1Q5TCY1 1321 aaPredicted RBP19.21■□□□□ 0.67
HLA-DOB-208ENST00000475235 MAPKBP1O60336 1514 aa19.2■□□□□ 0.66
HLA-DOB-208ENST00000475235 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
HLA-DOB-208ENST00000475235 CTTNBP2Q8WZ74 1663 aa19.18■□□□□ 0.66
HLA-DOB-208ENST00000475235 KIAA0556O60303 1618 aa19.17■□□□□ 0.66
HLA-DOB-208ENST00000475235 PELP1Q8IZL8 1130 aaKnown RBP19.17■□□□□ 0.66
HLA-DOB-208ENST00000475235 UHRF1BP1LA0JNW5 1464 aa19.16■□□□□ 0.66
HLA-DOB-208ENST00000475235 UACAQ9BZF9 1416 aa19.16■□□□□ 0.66
HLA-DOB-208ENST00000475235 ABCC2Q92887 1545 aa19.15■□□□□ 0.66
HLA-DOB-208ENST00000475235 ABCC10Q5T3U5 1492 aa19.14■□□□□ 0.66
HLA-DOB-208ENST00000475235 FAM69CQ0P6D2 419 aa19.11■□□□□ 0.65
HLA-DOB-208ENST00000475235 FAM9AQ8IZU1 332 aaPredicted RBP19.1■□□□□ 0.65
HLA-DOB-208ENST00000475235 DIP2BQ9P265 1576 aa19.07■□□□□ 0.64
HLA-DOB-208ENST00000475235 PLB1Q6P1J6 1458 aa19.06■□□□□ 0.64
HLA-DOB-208ENST00000475235 KDM5BQ9UGL1 1544 aa19.05■□□□□ 0.64
HLA-DOB-208ENST00000475235 KIF13AQ9H1H9 1805 aa19.04■□□□□ 0.64
HLA-DOB-208ENST00000475235 ASXL2Q76L83 1435 aa19.04■□□□□ 0.64
HLA-DOB-208ENST00000475235 KIF21BO75037 1637 aa19.02■□□□□ 0.64
HLA-DOB-208ENST00000475235 PPP6R1Q9UPN7 881 aa19■□□□□ 0.63
HLA-DOB-208ENST00000475235 P3H3Q8IVL6 736 aa18.98■□□□□ 0.63
HLA-DOB-208ENST00000475235 ABCA8O94911 1581 aa18.98■□□□□ 0.63
HLA-DOB-208ENST00000475235 SAMD9Q5K651 1589 aa18.97■□□□□ 0.63
HLA-DOB-208ENST00000475235 ADRA2BP18089 450 aa18.97■□□□□ 0.63
HLA-DOB-208ENST00000475235 ZCCHC11Q5TAX3 1644 aaKnown RBP18.95■□□□□ 0.62
HLA-DOB-208ENST00000475235 GLI2P10070 1586 aa18.95■□□□□ 0.62
HLA-DOB-208ENST00000475235 EPRSP07814 1512 aaKnown RBP18.92■□□□□ 0.62
HLA-DOB-208ENST00000475235 WDR7Q9Y4E6 1490 aa18.91■□□□□ 0.62
HLA-DOB-208ENST00000475235 RANGAP1P46060 587 aaPredicted RBP18.91■□□□□ 0.62
HLA-DOB-208ENST00000475235 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
HLA-DOB-208ENST00000475235 EFCAB5A4FU69 1503 aa18.89■□□□□ 0.62
HLA-DOB-208ENST00000475235 FHOD3Q2V2M9 1422 aa18.87■□□□□ 0.61
HLA-DOB-208ENST00000475235 EHMT2Q96KQ7 1210 aa18.84■□□□□ 0.61
HLA-DOB-208ENST00000475235 ATP10BO94823 1461 aa18.84■□□□□ 0.61
HLA-DOB-208ENST00000475235 KDM6BO15054 1643 aa18.83■□□□□ 0.6
HLA-DOB-208ENST00000475235 RAPGEF6Q8TEU7 1601 aa18.83■□□□□ 0.6
HLA-DOB-208ENST00000475235 TEX14Q8IWB6 1497 aa18.82■□□□□ 0.6
HLA-DOB-208ENST00000475235 ARID3CA6NKF2 412 aa18.81■□□□□ 0.6
HLA-DOB-208ENST00000475235 KCNH8Q96L42 1107 aa18.81■□□□□ 0.6
HLA-DOB-208ENST00000475235 MAP3K4Q9Y6R4 1608 aa18.81■□□□□ 0.6
HLA-DOB-208ENST00000475235 SLC24A1O60721 1099 aa18.8■□□□□ 0.6
HLA-DOB-208ENST00000475235 TSPOAP1O95153 1857 aa18.8■□□□□ 0.6
HLA-DOB-208ENST00000475235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
HLA-DOB-208ENST00000475235 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
HLA-DOB-208ENST00000475235 NUP153P49790 1475 aaKnown RBP18.78■□□□□ 0.6
HLA-DOB-208ENST00000475235 CD109Q6YHK3 1445 aa18.77■□□□□ 0.6
HLA-DOB-208ENST00000475235 PPRC1Q5VV67 1664 aaKnown RBP18.77■□□□□ 0.59
HLA-DOB-208ENST00000475235 MAGI3Q5TCQ9 1506 aa18.75■□□□□ 0.59
HLA-DOB-208ENST00000475235 FMN1Q68DA7 1419 aa18.75■□□□□ 0.59
HLA-DOB-208ENST00000475235 ARHGAP35Q9NRY4 1499 aa18.74■□□□□ 0.59
HLA-DOB-208ENST00000475235 CFAP43Q8NDM7 1665 aa18.73■□□□□ 0.59
HLA-DOB-208ENST00000475235 PLEKHD1A6NEE1 506 aa18.7■□□□□ 0.58
HLA-DOB-208ENST00000475235 PIAS4Q8N2W9 510 aaPredicted RBP18.69■□□□□ 0.58
HLA-DOB-208ENST00000475235 COL17A1Q9UMD9 1497 aaPredicted RBP18.67■□□□□ 0.58
HLA-DOB-208ENST00000475235 ABCA9Q8IUA7 1624 aa18.66■□□□□ 0.58
HLA-DOB-208ENST00000475235 PHLDB1Q86UU1 1377 aa18.64■□□□□ 0.57
HLA-DOB-208ENST00000475235 ATP1B4Q9UN42 357 aaPredicted RBP18.64■□□□□ 0.57
HLA-DOB-208ENST00000475235 HECW1Q76N89 1606 aa18.63■□□□□ 0.57
HLA-DOB-208ENST00000475235 CDK11AQ9UQ88 783 aaPredicted RBP18.61■□□□□ 0.57
HLA-DOB-208ENST00000475235 CDK13Q14004 1512 aaKnown RBP18.6■□□□□ 0.57
HLA-DOB-208ENST00000475235 NEO1Q92859 1461 aa18.59■□□□□ 0.57
HLA-DOB-208ENST00000475235 ARAP3Q8WWN8 1544 aa18.59■□□□□ 0.57
HLA-DOB-208ENST00000475235 CLIP1P30622 1438 aa18.58■□□□□ 0.57
HLA-DOB-208ENST00000475235 CASKIN1Q8WXD9 1431 aa18.55■□□□□ 0.56
HLA-DOB-208ENST00000475235 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.54■□□□□ 0.56
HLA-DOB-208ENST00000475235 CCDC18Q5T9S5 1454 aa18.52■□□□□ 0.55
HLA-DOB-208ENST00000475235 KDM4FA0A1W2PPD8 638 aa18.5■□□□□ 0.55
HLA-DOB-208ENST00000475235 TROQ12816 1431 aaPredicted RBP18.5■□□□□ 0.55
HLA-DOB-208ENST00000475235 FANCAO15360 1455 aa18.49■□□□□ 0.55
HLA-DOB-208ENST00000475235 PCF11O94913 1555 aaKnown RBP18.49■□□□□ 0.55
HLA-DOB-208ENST00000475235 FYCO1Q9BQS8 1478 aa18.49■□□□□ 0.55
HLA-DOB-208ENST00000475235 TTC37Q6PGP7 1564 aa18.48■□□□□ 0.55
HLA-DOB-208ENST00000475235 PLCH2O75038 1416 aa18.48■□□□□ 0.55
HLA-DOB-208ENST00000475235 CFAP74Q9C0B2 1584 aa18.47■□□□□ 0.55
HLA-DOB-208ENST00000475235 AKNAQ7Z591 1439 aa18.47■□□□□ 0.55
HLA-DOB-208ENST00000475235 RAPGEF3O95398 923 aa18.46■□□□□ 0.55
HLA-DOB-208ENST00000475235 KIF14Q15058 1648 aa18.45■□□□□ 0.54
HLA-DOB-208ENST00000475235 DENND4BO75064 1496 aaPredicted RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms