RNA–Protein interactions for RNA: ENST00000474597.5

SSR1-204, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 5 BASIC

Gene SSR1, Length 1,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-204ENST00000474597 ARHGAP35Q9NRY4 1499 aa30.91■■■□□ 2.54
SSR1-204ENST00000474597 PPARGC1BQ86YN6 1023 aaKnown RBP30.88■■■□□ 2.53
SSR1-204ENST00000474597 SNAPC4Q5SXM2 1469 aa30.88■■■□□ 2.53
SSR1-204ENST00000474597 MAGI1Q96QZ7 1491 aaPredicted RBP30.81■■■□□ 2.52
SSR1-204ENST00000474597 APLP2Q06481 763 aa30.8■■■□□ 2.52
SSR1-204ENST00000474597 EFCAB5A4FU69 1503 aa30.77■■■□□ 2.52
SSR1-204ENST00000474597 GRIN2AQ12879 1464 aa30.7■■■□□ 2.5
SSR1-204ENST00000474597 SYNJ2O15056 1496 aa30.69■■■□□ 2.5
SSR1-204ENST00000474597 CHMP7Q8WUX9 453 aaPredicted RBP30.67■■■□□ 2.5
SSR1-204ENST00000474597 IQGAP2Q13576 1575 aa30.66■■■□□ 2.5
SSR1-204ENST00000474597 P3H3Q8IVL6 736 aa30.66■■■□□ 2.5
SSR1-204ENST00000474597 TTBK1Q5TCY1 1321 aaPredicted RBP30.66■■■□□ 2.5
SSR1-204ENST00000474597 SAMD9Q5K651 1589 aa30.62■■■□□ 2.49
SSR1-204ENST00000474597 FHOD3Q2V2M9 1422 aa30.62■■■□□ 2.49
SSR1-204ENST00000474597 FBLN2P98095 1184 aa30.6■■■□□ 2.49
SSR1-204ENST00000474597 KIAA0586Q9BVV6 1533 aa30.57■■■□□ 2.48
SSR1-204ENST00000474597 FMN1Q68DA7 1419 aa30.51■■■□□ 2.47
SSR1-204ENST00000474597 CEP170Q5SW79 1584 aa30.49■■■□□ 2.47
SSR1-204ENST00000474597 PCF11O94913 1555 aaKnown RBP30.49■■■□□ 2.47
SSR1-204ENST00000474597 UGGT2Q9NYU1 1516 aa30.48■■■□□ 2.47
SSR1-204ENST00000474597 NUP160Q12769 1436 aa30.44■■■□□ 2.46
SSR1-204ENST00000474597 FYCO1Q9BQS8 1478 aa30.44■■■□□ 2.46
SSR1-204ENST00000474597 CASKIN1Q8WXD9 1431 aa30.42■■■□□ 2.46
SSR1-204ENST00000474597 MAP3K1Q13233 1512 aa30.41■■■□□ 2.46
SSR1-204ENST00000474597 ATP1B4Q9UN42 357 aaPredicted RBP30.41■■■□□ 2.46
SSR1-204ENST00000474597 TIAM1Q13009 1591 aa30.4■■■□□ 2.46
SSR1-204ENST00000474597 CHD1O14646 1710 aa30.38■■■□□ 2.45
SSR1-204ENST00000474597 KANK4Q5T7N3 995 aaPredicted RBP30.36■■■□□ 2.45
SSR1-204ENST00000474597 CFAP43Q8NDM7 1665 aa30.34■■■□□ 2.45
SSR1-204ENST00000474597 KIAA0556O60303 1618 aa30.34■■■□□ 2.45
SSR1-204ENST00000474597 DISP1Q96F81 1524 aa30.3■■■□□ 2.44
SSR1-204ENST00000474597 JPH4Q96JJ6 628 aa30.26■■■□□ 2.43
SSR1-204ENST00000474597 LRRC9Q6ZRR7 1453 aa30.24■■■□□ 2.43
SSR1-204ENST00000474597 CARMIL2Q6F5E8 1435 aa30.23■■■□□ 2.43
SSR1-204ENST00000474597 HECW1Q76N89 1606 aa30.2■■■□□ 2.43
SSR1-204ENST00000474597 LRRIQ1Q96JM4 1722 aa30.18■■■□□ 2.42
SSR1-204ENST00000474597 CCDC18Q5T9S5 1454 aa30.14■■■□□ 2.42
SSR1-204ENST00000474597 MTUS2Q5JR59 1369 aa30.07■■■□□ 2.4
SSR1-204ENST00000474597 RAPGEF6Q8TEU7 1601 aa30.07■■■□□ 2.4
SSR1-204ENST00000474597 HRCP23327 699 aa30.06■■■□□ 2.4
SSR1-204ENST00000474597 PRG4Q92954 1404 aaPredicted RBP30.05■■■□□ 2.4
SSR1-204ENST00000474597 EPRSP07814 1512 aaKnown RBP30.04■■■□□ 2.4
SSR1-204ENST00000474597 RRBP1Q9P2E9 1410 aaKnown RBP30.04■■■□□ 2.4
SSR1-204ENST00000474597 SHROOM2Q13796 1616 aa30.03■■■□□ 2.4
SSR1-204ENST00000474597 EHBP1L1Q8N3D4 1523 aa30■■■□□ 2.39
SSR1-204ENST00000474597 HNRNPUL2Q1KMD3 747 aaKnown RBP29.98■■■□□ 2.39
SSR1-204ENST00000474597 CCNB3Q8WWL7 1395 aa29.97■■■□□ 2.39
SSR1-204ENST00000474597 CDK13Q14004 1512 aaKnown RBP29.97■■■□□ 2.39
SSR1-204ENST00000474597 CLASP1Q7Z460 1538 aa29.96■■■□□ 2.39
SSR1-204ENST00000474597 PHLDB1Q86UU1 1377 aa29.96■■■□□ 2.39
SSR1-204ENST00000474597 SUPT6HQ7KZ85 1726 aaKnown RBP29.96■■■□□ 2.39
SSR1-204ENST00000474597 NUP153P49790 1475 aaKnown RBP29.95■■■□□ 2.38
SSR1-204ENST00000474597 PLB1Q6P1J6 1458 aa29.94■■■□□ 2.38
SSR1-204ENST00000474597 ARID3CA6NKF2 412 aa29.94■■■□□ 2.38
SSR1-204ENST00000474597 PTPRGP23470 1445 aa29.89■■■□□ 2.38
SSR1-204ENST00000474597 MAGI3Q5TCQ9 1506 aa29.89■■■□□ 2.38
SSR1-204ENST00000474597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.87■■■□□ 2.37
SSR1-204ENST00000474597 ABCA8O94911 1581 aa29.87■■■□□ 2.37
SSR1-204ENST00000474597 NCOA2Q15596 1464 aa29.86■■■□□ 2.37
SSR1-204ENST00000474597 CDK11AQ9UQ88 783 aaPredicted RBP29.85■■■□□ 2.37
SSR1-204ENST00000474597 ERCC6L2Q5T890 1561 aa29.79■■■□□ 2.36
SSR1-204ENST00000474597 FAM50AQ14320 339 aaKnown RBP29.78■■■□□ 2.36
SSR1-204ENST00000474597 ARHGEF11O15085 1522 aa29.77■■■□□ 2.36
SSR1-204ENST00000474597 MYOM3Q5VTT5 1437 aa29.76■■■□□ 2.35
SSR1-204ENST00000474597 FGD6Q6ZV73 1430 aa29.76■■■□□ 2.35
SSR1-204ENST00000474597 ZEB1P37275 1124 aaPredicted RBP29.75■■■□□ 2.35
SSR1-204ENST00000474597 CCER1Q8TC90 406 aaPredicted RBP29.75■■■□□ 2.35
SSR1-204ENST00000474597 ITGAEP38570 1179 aa29.73■■■□□ 2.35
SSR1-204ENST00000474597 UACAQ9BZF9 1416 aa29.72■■■□□ 2.35
SSR1-204ENST00000474597 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.72■■■□□ 2.35
SSR1-204ENST00000474597 OSCARQ8IYS5 282 aa29.71■■■□□ 2.35
SSR1-204ENST00000474597 TROQ12816 1431 aaPredicted RBP29.69■■■□□ 2.34
SSR1-204ENST00000474597 ATP10BO94823 1461 aa29.68■■■□□ 2.34
SSR1-204ENST00000474597 PLEKHD1A6NEE1 506 aa29.64■■■□□ 2.33
SSR1-204ENST00000474597 PTPN23Q9H3S7 1636 aa29.63■■■□□ 2.33
SSR1-204ENST00000474597 ABCC2Q92887 1545 aa29.61■■■□□ 2.33
SSR1-204ENST00000474597 ADCY10Q96PN6 1610 aa29.61■■■□□ 2.33
SSR1-204ENST00000474597 MIA2Q96PC5 1412 aa29.58■■■□□ 2.33
SSR1-204ENST00000474597 KIF14Q15058 1648 aa29.55■■■□□ 2.32
SSR1-204ENST00000474597 TCOF1Q13428 1488 aaKnown RBP29.54■■■□□ 2.32
SSR1-204ENST00000474597 ITSN2Q9NZM3 1697 aa29.53■■■□□ 2.32
SSR1-204ENST00000474597 UHRF1BP1LA0JNW5 1464 aa29.52■■■□□ 2.32
SSR1-204ENST00000474597 SETD5Q9C0A6 1442 aa29.45■■■□□ 2.31
SSR1-204ENST00000474597 ZCCHC11Q5TAX3 1644 aaKnown RBP29.44■■■□□ 2.3
SSR1-204ENST00000474597 GPATCH8Q9UKJ3 1502 aaKnown RBP29.42■■■□□ 2.3
SSR1-204ENST00000474597 RAB3GAP2Q9H2M9 1393 aa29.41■■■□□ 2.3
SSR1-204ENST00000474597 CFDP1Q9UEE9 299 aaPredicted RBP29.41■■■□□ 2.3
SSR1-204ENST00000474597 KDM5BQ9UGL1 1544 aa29.4■■■□□ 2.3
SSR1-204ENST00000474597 ABCC10Q5T3U5 1492 aa29.39■■■□□ 2.3
SSR1-204ENST00000474597 CDC42BPAQ5VT25 1732 aa29.39■■■□□ 2.29
SSR1-204ENST00000474597 PTPRKQ15262 1439 aa29.37■■■□□ 2.29
SSR1-204ENST00000474597 CAMSAP2Q08AD1 1489 aa29.33■■■□□ 2.29
SSR1-204ENST00000474597 DHX57Q6P158 1386 aaKnown RBP29.32■■■□□ 2.28
SSR1-204ENST00000474597 DNMT1P26358 1616 aaKnown RBP29.3■■■□□ 2.28
SSR1-204ENST00000474597 ZNF644Q9H582 1327 aaPredicted RBP29.3■■■□□ 2.28
SSR1-204ENST00000474597 ZNF777Q9ULD5 760 aaPredicted RBP29.3■■■□□ 2.28
SSR1-204ENST00000474597 HFM1A2PYH4 1435 aa29.3■■■□□ 2.28
SSR1-204ENST00000474597 DAPK1P53355 1430 aa29.27■■■□□ 2.28
SSR1-204ENST00000474597 CHIC2Q9UKJ5 165 aa29.26■■■□□ 2.27
SSR1-204ENST00000474597 CLSPNQ9HAW4 1339 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms