RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 JPH4Q96JJ6 628 aa18.05■□□□□ 0.48
COL4A1-203ENST00000474391 KIAA0586Q9BVV6 1533 aa18.03■□□□□ 0.48
COL4A1-203ENST00000474391 PRG4Q92954 1404 aaPredicted RBP18.03■□□□□ 0.48
COL4A1-203ENST00000474391 RAPGEF2Q9Y4G8 1499 aa17.94■□□□□ 0.46
COL4A1-203ENST00000474391 IQGAP2Q13576 1575 aa17.89■□□□□ 0.45
COL4A1-203ENST00000474391 TRHP20396 242 aaPredicted RBP17.89■□□□□ 0.45
COL4A1-203ENST00000474391 PRXQ9BXM0 1461 aa17.86■□□□□ 0.45
COL4A1-203ENST00000474391 CARMIL2Q6F5E8 1435 aa17.82■□□□□ 0.44
COL4A1-203ENST00000474391 UGGT2Q9NYU1 1516 aa17.81■□□□□ 0.44
COL4A1-203ENST00000474391 DISP1Q96F81 1524 aa17.8■□□□□ 0.44
COL4A1-203ENST00000474391 TNIKQ9UKE5 1360 aa17.79■□□□□ 0.44
COL4A1-203ENST00000474391 PTPRGP23470 1445 aa17.79■□□□□ 0.44
COL4A1-203ENST00000474391 ADCY10Q96PN6 1610 aa17.79■□□□□ 0.44
COL4A1-203ENST00000474391 EEA1Q15075 1411 aa17.77■□□□□ 0.44
COL4A1-203ENST00000474391 CSRNP3Q8WYN3 585 aa17.76■□□□□ 0.43
COL4A1-203ENST00000474391 CTTNBP2Q8WZ74 1663 aa17.75■□□□□ 0.43
COL4A1-203ENST00000474391 MAPKBP1O60336 1514 aa17.73■□□□□ 0.43
COL4A1-203ENST00000474391 NPM1P06748 294 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL4A1-203ENST00000474391 KIAA0556O60303 1618 aa17.72■□□□□ 0.43
COL4A1-203ENST00000474391 CHIC1Q5VXU3 224 aa17.7■□□□□ 0.42
COL4A1-203ENST00000474391 UHRF1BP1LA0JNW5 1464 aa17.69■□□□□ 0.42
COL4A1-203ENST00000474391 GOLGA3Q08378 1498 aa17.68■□□□□ 0.42
COL4A1-203ENST00000474391 ABCC10Q5T3U5 1492 aa17.68■□□□□ 0.42
COL4A1-203ENST00000474391 ABCC2Q92887 1545 aa17.67■□□□□ 0.42
COL4A1-203ENST00000474391 UACAQ9BZF9 1416 aa17.67■□□□□ 0.42
COL4A1-203ENST00000474391 KIF13AQ9H1H9 1805 aa17.66■□□□□ 0.42
COL4A1-203ENST00000474391 TTBK1Q5TCY1 1321 aaPredicted RBP17.66■□□□□ 0.42
COL4A1-203ENST00000474391 DIP2BQ9P265 1576 aa17.62■□□□□ 0.41
COL4A1-203ENST00000474391 KDM5BQ9UGL1 1544 aa17.61■□□□□ 0.41
COL4A1-203ENST00000474391 FAM69CQ0P6D2 419 aa17.6■□□□□ 0.41
COL4A1-203ENST00000474391 FAM9AQ8IZU1 332 aaPredicted RBP17.6■□□□□ 0.41
COL4A1-203ENST00000474391 KIF21BO75037 1637 aa17.59■□□□□ 0.41
COL4A1-203ENST00000474391 PLB1Q6P1J6 1458 aa17.56■□□□□ 0.4
COL4A1-203ENST00000474391 ASXL2Q76L83 1435 aa17.56■□□□□ 0.4
COL4A1-203ENST00000474391 ABCA8O94911 1581 aa17.56■□□□□ 0.4
COL4A1-203ENST00000474391 SAMD9Q5K651 1589 aa17.56■□□□□ 0.4
COL4A1-203ENST00000474391 ZCCHC11Q5TAX3 1644 aaKnown RBP17.54■□□□□ 0.4
COL4A1-203ENST00000474391 GLI2P10070 1586 aa17.51■□□□□ 0.39
COL4A1-203ENST00000474391 P3H3Q8IVL6 736 aa17.48■□□□□ 0.39
COL4A1-203ENST00000474391 EPRSP07814 1512 aaKnown RBP17.47■□□□□ 0.39
COL4A1-203ENST00000474391 WDR7Q9Y4E6 1490 aa17.45■□□□□ 0.38
COL4A1-203ENST00000474391 EFCAB5A4FU69 1503 aa17.44■□□□□ 0.38
COL4A1-203ENST00000474391 FHOD3Q2V2M9 1422 aa17.41■□□□□ 0.38
COL4A1-203ENST00000474391 ATP10BO94823 1461 aa17.41■□□□□ 0.38
COL4A1-203ENST00000474391 MAP3K4Q9Y6R4 1608 aa17.4■□□□□ 0.38
COL4A1-203ENST00000474391 TSPOAP1O95153 1857 aa17.4■□□□□ 0.38
COL4A1-203ENST00000474391 PPRC1Q5VV67 1664 aaKnown RBP17.4■□□□□ 0.38
COL4A1-203ENST00000474391 RAPGEF6Q8TEU7 1601 aa17.39■□□□□ 0.38
COL4A1-203ENST00000474391 UBTFP17480 764 aaKnown RBP17.39■□□□□ 0.37
COL4A1-203ENST00000474391 RANGAP1P46060 587 aaPredicted RBP17.39■□□□□ 0.37
COL4A1-203ENST00000474391 NUP153P49790 1475 aaKnown RBP17.37■□□□□ 0.37
COL4A1-203ENST00000474391 KDM6BO15054 1643 aa17.36■□□□□ 0.37
COL4A1-203ENST00000474391 EHMT2Q96KQ7 1210 aa17.34■□□□□ 0.37
COL4A1-203ENST00000474391 TEX14Q8IWB6 1497 aa17.33■□□□□ 0.37
COL4A1-203ENST00000474391 ARHGAP35Q9NRY4 1499 aa17.32■□□□□ 0.36
COL4A1-203ENST00000474391 ARID3CA6NKF2 412 aa17.32■□□□□ 0.36
COL4A1-203ENST00000474391 KCNH8Q96L42 1107 aa17.32■□□□□ 0.36
COL4A1-203ENST00000474391 CFAP43Q8NDM7 1665 aa17.32■□□□□ 0.36
COL4A1-203ENST00000474391 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
COL4A1-203ENST00000474391 CD109Q6YHK3 1445 aa17.3■□□□□ 0.36
COL4A1-203ENST00000474391 COL17A1Q9UMD9 1497 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-203ENST00000474391 FMN1Q68DA7 1419 aa17.27■□□□□ 0.35
COL4A1-203ENST00000474391 ABCA9Q8IUA7 1624 aa17.26■□□□□ 0.35
COL4A1-203ENST00000474391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
COL4A1-203ENST00000474391 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
COL4A1-203ENST00000474391 PLEKHD1A6NEE1 506 aa17.21■□□□□ 0.35
COL4A1-203ENST00000474391 HECW1Q76N89 1606 aa17.2■□□□□ 0.34
COL4A1-203ENST00000474391 CDK13Q14004 1512 aaKnown RBP17.19■□□□□ 0.34
COL4A1-203ENST00000474391 PHLDB1Q86UU1 1377 aa17.17■□□□□ 0.34
COL4A1-203ENST00000474391 ARAP3Q8WWN8 1544 aa17.16■□□□□ 0.34
COL4A1-203ENST00000474391 NEO1Q92859 1461 aa17.14■□□□□ 0.33
COL4A1-203ENST00000474391 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.14■□□□□ 0.33
COL4A1-203ENST00000474391 CLIP1P30622 1438 aa17.13■□□□□ 0.33
COL4A1-203ENST00000474391 CASKIN1Q8WXD9 1431 aa17.13■□□□□ 0.33
COL4A1-203ENST00000474391 AEBP2Q6ZN18 517 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-203ENST00000474391 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
COL4A1-203ENST00000474391 CDK11AQ9UQ88 783 aaPredicted RBP17.1■□□□□ 0.33
COL4A1-203ENST00000474391 PCF11O94913 1555 aaKnown RBP17.1■□□□□ 0.33
COL4A1-203ENST00000474391 TTC37Q6PGP7 1564 aa17.1■□□□□ 0.33
COL4A1-203ENST00000474391 LRRIQ1Q96JM4 1722 aa17.1■□□□□ 0.33
COL4A1-203ENST00000474391 KDM4FA0A1W2PPD8 638 aa17.08■□□□□ 0.32
COL4A1-203ENST00000474391 FYCO1Q9BQS8 1478 aa17.07■□□□□ 0.32
COL4A1-203ENST00000474391 TROQ12816 1431 aaPredicted RBP17.07■□□□□ 0.32
COL4A1-203ENST00000474391 CCDC18Q5T9S5 1454 aa17.06■□□□□ 0.32
COL4A1-203ENST00000474391 FANCAO15360 1455 aa17.05■□□□□ 0.32
COL4A1-203ENST00000474391 PLCH2O75038 1416 aa17.04■□□□□ 0.32
COL4A1-203ENST00000474391 CFAP74Q9C0B2 1584 aa17.04■□□□□ 0.32
COL4A1-203ENST00000474391 AKNAQ7Z591 1439 aa17.04■□□□□ 0.32
COL4A1-203ENST00000474391 KIF14Q15058 1648 aa17.03■□□□□ 0.32
COL4A1-203ENST00000474391 FRMPD1Q5SYB0 1578 aa17.02■□□□□ 0.32
COL4A1-203ENST00000474391 RAPGEF3O95398 923 aa17.02■□□□□ 0.32
COL4A1-203ENST00000474391 CEP162Q5TB80 1403 aa17.02■□□□□ 0.31
COL4A1-203ENST00000474391 ADGRL1O94910 1474 aa17.01■□□□□ 0.31
COL4A1-203ENST00000474391 DENND4BO75064 1496 aaPredicted RBP16.99■□□□□ 0.31
COL4A1-203ENST00000474391 RICTORQ6R327 1708 aa16.98■□□□□ 0.31
COL4A1-203ENST00000474391 MYO5CQ9NQX4 1742 aa16.98■□□□□ 0.31
COL4A1-203ENST00000474391 EFCAB2Q5VUJ9 269 aa16.96■□□□□ 0.31
COL4A1-203ENST00000474391 ZMYM4Q5VZL5 1548 aa16.95■□□□□ 0.3
COL4A1-203ENST00000474391 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
COL4A1-203ENST00000474391 SCAPERQ9BY12 1400 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms