RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 RUSC2Q8N2Y8 1516 aa23.64■■□□□ 1.38
CHD3-209ENST00000473376 KIAA0586Q9BVV6 1533 aa23.64■■□□□ 1.37
CHD3-209ENST00000473376 CUL7Q14999 1698 aa23.62■■□□□ 1.37
CHD3-209ENST00000473376 CARMIL1Q5VZK9 1371 aa23.53■■□□□ 1.36
CHD3-209ENST00000473376 NPM1P06748 294 aaKnown RBP eCLIP23.51■■□□□ 1.35
CHD3-209ENST00000473376 MAPKBP1O60336 1514 aa23.47■■□□□ 1.35
CHD3-209ENST00000473376 ABCC10Q5T3U5 1492 aa23.43■■□□□ 1.34
CHD3-209ENST00000473376 CARMIL2Q6F5E8 1435 aa23.41■■□□□ 1.34
CHD3-209ENST00000473376 PTPRGP23470 1445 aa23.39■■□□□ 1.33
CHD3-209ENST00000473376 KIF13AQ9H1H9 1805 aa23.38■■□□□ 1.33
CHD3-209ENST00000473376 ADCY10Q96PN6 1610 aa23.38■■□□□ 1.33
CHD3-209ENST00000473376 TNIKQ9UKE5 1360 aa23.37■■□□□ 1.33
CHD3-209ENST00000473376 FAM69CQ0P6D2 419 aa23.36■■□□□ 1.33
CHD3-209ENST00000473376 IQGAP2Q13576 1575 aa23.33■■□□□ 1.33
CHD3-209ENST00000473376 RAPGEF2Q9Y4G8 1499 aa23.32■■□□□ 1.32
CHD3-209ENST00000473376 DIP2BQ9P265 1576 aa23.3■■□□□ 1.32
CHD3-209ENST00000473376 AEBP2Q6ZN18 517 aaPredicted RBP23.29■■□□□ 1.32
CHD3-209ENST00000473376 UHRF1BP1LA0JNW5 1464 aa23.28■■□□□ 1.32
CHD3-209ENST00000473376 ABCC2Q92887 1545 aa23.26■■□□□ 1.31
CHD3-209ENST00000473376 UGGT2Q9NYU1 1516 aa23.25■■□□□ 1.31
CHD3-209ENST00000473376 DISP1Q96F81 1524 aa23.23■■□□□ 1.31
CHD3-209ENST00000473376 UACAQ9BZF9 1416 aa23.22■■□□□ 1.31
CHD3-209ENST00000473376 PLB1Q6P1J6 1458 aa23.21■■□□□ 1.31
CHD3-209ENST00000473376 GLI2P10070 1586 aa23.14■■□□□ 1.3
CHD3-209ENST00000473376 KDM5BQ9UGL1 1544 aa23.14■■□□□ 1.3
CHD3-209ENST00000473376 ASXL2Q76L83 1435 aa23.14■■□□□ 1.29
CHD3-209ENST00000473376 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
CHD3-209ENST00000473376 KIAA0556O60303 1618 aa23.1■■□□□ 1.29
CHD3-209ENST00000473376 GOLGA3Q08378 1498 aa23.09■■□□□ 1.29
CHD3-209ENST00000473376 TTBK1Q5TCY1 1321 aaPredicted RBP23.08■■□□□ 1.28
CHD3-209ENST00000473376 KDM6BO15054 1643 aa23.07■■□□□ 1.28
CHD3-209ENST00000473376 EPRSP07814 1512 aaKnown RBP23.02■■□□□ 1.28
CHD3-209ENST00000473376 CTTNBP2Q8WZ74 1663 aa23.01■■□□□ 1.27
CHD3-209ENST00000473376 TSPOAP1O95153 1857 aa22.96■■□□□ 1.27
CHD3-209ENST00000473376 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
CHD3-209ENST00000473376 TEX14Q8IWB6 1497 aa22.96■■□□□ 1.27
CHD3-209ENST00000473376 ZCCHC11Q5TAX3 1644 aaKnown RBP22.96■■□□□ 1.27
CHD3-209ENST00000473376 WDR7Q9Y4E6 1490 aa22.94■■□□□ 1.26
CHD3-209ENST00000473376 PPRC1Q5VV67 1664 aaKnown RBP22.93■■□□□ 1.26
CHD3-209ENST00000473376 MAP3K4Q9Y6R4 1608 aa22.93■■□□□ 1.26
CHD3-209ENST00000473376 CSRNP3Q8WYN3 585 aa22.93■■□□□ 1.26
CHD3-209ENST00000473376 ABCA8O94911 1581 aa22.93■■□□□ 1.26
CHD3-209ENST00000473376 EEA1Q15075 1411 aa22.91■■□□□ 1.26
CHD3-209ENST00000473376 KDM4FA0A1W2PPD8 638 aa22.87■■□□□ 1.25
CHD3-209ENST00000473376 MAGI3Q5TCQ9 1506 aa22.84■■□□□ 1.25
CHD3-209ENST00000473376 COL17A1Q9UMD9 1497 aaPredicted RBP22.83■■□□□ 1.25
CHD3-209ENST00000473376 CD109Q6YHK3 1445 aa22.8■■□□□ 1.24
CHD3-209ENST00000473376 CFAP43Q8NDM7 1665 aa22.78■■□□□ 1.24
CHD3-209ENST00000473376 SAMD9Q5K651 1589 aa22.76■■□□□ 1.23
CHD3-209ENST00000473376 ATP10BO94823 1461 aa22.75■■□□□ 1.23
CHD3-209ENST00000473376 PHLDB1Q86UU1 1377 aa22.74■■□□□ 1.23
CHD3-209ENST00000473376 KCNH8Q96L42 1107 aa22.73■■□□□ 1.23
CHD3-209ENST00000473376 P3H3Q8IVL6 736 aa22.68■■□□□ 1.22
CHD3-209ENST00000473376 ARAP3Q8WWN8 1544 aa22.67■■□□□ 1.22
CHD3-209ENST00000473376 ADGRL1O94910 1474 aa22.66■■□□□ 1.22
CHD3-209ENST00000473376 RAPGEF6Q8TEU7 1601 aa22.64■■□□□ 1.21
CHD3-209ENST00000473376 ABCA9Q8IUA7 1624 aa22.62■■□□□ 1.21
CHD3-209ENST00000473376 KIF21BO75037 1637 aa22.6■■□□□ 1.21
CHD3-209ENST00000473376 EFCAB5A4FU69 1503 aa22.6■■□□□ 1.21
CHD3-209ENST00000473376 NUP153P49790 1475 aaKnown RBP22.59■■□□□ 1.21
CHD3-209ENST00000473376 NEO1Q92859 1461 aa22.58■■□□□ 1.2
CHD3-209ENST00000473376 PLEKHD1A6NEE1 506 aa22.54■■□□□ 1.2
CHD3-209ENST00000473376 FHOD3Q2V2M9 1422 aa22.54■■□□□ 1.2
CHD3-209ENST00000473376 ARID3CA6NKF2 412 aa22.53■■□□□ 1.2
CHD3-209ENST00000473376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.52■■□□□ 1.2
CHD3-209ENST00000473376 HNRNPUL2Q1KMD3 747 aaKnown RBP22.52■■□□□ 1.2
CHD3-209ENST00000473376 CHIC1Q5VXU3 224 aa22.44■■□□□ 1.18
CHD3-209ENST00000473376 FMN1Q68DA7 1419 aa22.43■■□□□ 1.18
CHD3-209ENST00000473376 RANGAP1P46060 587 aaPredicted RBP22.43■■□□□ 1.18
CHD3-209ENST00000473376 RAPGEF3O95398 923 aa22.4■■□□□ 1.18
CHD3-209ENST00000473376 UBTFP17480 764 aaKnown RBP22.4■■□□□ 1.18
CHD3-209ENST00000473376 CFAP74Q9C0B2 1584 aa22.37■■□□□ 1.17
CHD3-209ENST00000473376 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.36■■□□□ 1.17
CHD3-209ENST00000473376 FANCAO15360 1455 aa22.36■■□□□ 1.17
CHD3-209ENST00000473376 DENND4BO75064 1496 aaPredicted RBP22.36■■□□□ 1.17
CHD3-209ENST00000473376 AKNAQ7Z591 1439 aa22.36■■□□□ 1.17
CHD3-209ENST00000473376 CDK11AQ9UQ88 783 aaPredicted RBP22.35■■□□□ 1.17
CHD3-209ENST00000473376 FRMPD1Q5SYB0 1578 aa22.33■■□□□ 1.17
CHD3-209ENST00000473376 ARHGAP35Q9NRY4 1499 aa22.33■■□□□ 1.16
CHD3-209ENST00000473376 HECW2Q9P2P5 1572 aa22.32■■□□□ 1.16
CHD3-209ENST00000473376 PLCH2O75038 1416 aa22.31■■□□□ 1.16
CHD3-209ENST00000473376 MAGI2Q86UL8 1455 aa22.31■■□□□ 1.16
CHD3-209ENST00000473376 ADAMTSL3P82987 1691 aa22.3■■□□□ 1.16
CHD3-209ENST00000473376 HECW1Q76N89 1606 aa22.29■■□□□ 1.16
CHD3-209ENST00000473376 ZMYM4Q5VZL5 1548 aa22.28■■□□□ 1.16
CHD3-209ENST00000473376 CDK13Q14004 1512 aaKnown RBP22.27■■□□□ 1.16
CHD3-209ENST00000473376 PTPRMP28827 1452 aa22.27■■□□□ 1.16
CHD3-209ENST00000473376 RICTORQ6R327 1708 aa22.26■■□□□ 1.15
CHD3-209ENST00000473376 TTC37Q6PGP7 1564 aa22.26■■□□□ 1.15
CHD3-209ENST00000473376 ARHGEF40Q8TER5 1519 aa22.26■■□□□ 1.15
CHD3-209ENST00000473376 EFCAB2Q5VUJ9 269 aa22.23■■□□□ 1.15
CHD3-209ENST00000473376 BCORL1Q5H9F3 1711 aa22.23■■□□□ 1.15
CHD3-209ENST00000473376 TROQ12816 1431 aaPredicted RBP22.22■■□□□ 1.15
CHD3-209ENST00000473376 POGZQ7Z3K3 1410 aa22.22■■□□□ 1.15
CHD3-209ENST00000473376 ARID4BQ4LE39 1312 aaPredicted RBP22.21■■□□□ 1.15
CHD3-209ENST00000473376 SCAPERQ9BY12 1400 aa22.2■■□□□ 1.14
CHD3-209ENST00000473376 CLIP1P30622 1438 aa22.19■■□□□ 1.14
CHD3-209ENST00000473376 ATP1B4Q9UN42 357 aaPredicted RBP22.18■■□□□ 1.14
CHD3-209ENST00000473376 ZFYVE16Q7Z3T8 1539 aa22.17■■□□□ 1.14
CHD3-209ENST00000473376 CASKIN1Q8WXD9 1431 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms