RNA–Protein interactions for RNA: ENST00000473007.7

UBE2D4-210, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 5

Gene UBE2D4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-210ENST00000473007 HRCP23327 699 aa7.08□□□□□ -1.28
UBE2D4-210ENST00000473007 PABPN1Q86U42 306 aaKnown RBP eCLIP7.06□□□□□ -1.28
UBE2D4-210ENST00000473007 GTPBP6O43824 516 aaPredicted RBP7.04□□□□□ -1.28
UBE2D4-210ENST00000473007 NKX1-1Q15270 411 aaPredicted RBP7.03□□□□□ -1.28
UBE2D4-210ENST00000473007 LMOD2Q6P5Q4 547 aa7.03□□□□□ -1.28
UBE2D4-210ENST00000473007 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.03□□□□□ -1.28
UBE2D4-210ENST00000473007 CIZ1Q9ULV3 898 aaPredicted RBP7.03□□□□□ -1.28
UBE2D4-210ENST00000473007 STAG3Q9UJ98 1225 aa7.02□□□□□ -1.29
UBE2D4-210ENST00000473007 DCAF8L1A6NGE4 600 aa7.01□□□□□ -1.29
UBE2D4-210ENST00000473007 APLP2Q06481 763 aa7.01□□□□□ -1.29
UBE2D4-210ENST00000473007 PLCD3Q8N3E9 789 aa7.01□□□□□ -1.29
UBE2D4-210ENST00000473007 NEUROD2Q15784 382 aa6.99□□□□□ -1.29
UBE2D4-210ENST00000473007 TRHP20396 242 aaPredicted RBP6.98□□□□□ -1.29
UBE2D4-210ENST00000473007 P3H3Q8IVL6 736 aa6.98□□□□□ -1.29
UBE2D4-210ENST00000473007 TRIM41Q8WV44 630 aa6.98□□□□□ -1.29
UBE2D4-210ENST00000473007 EIF4G1Q04637 1599 aaKnown RBP6.98□□□□□ -1.29
UBE2D4-210ENST00000473007 PEG3Q9GZU2 1588 aa6.97□□□□□ -1.29
UBE2D4-210ENST00000473007 ZMYND15Q9H091 742 aa6.96□□□□□ -1.3
UBE2D4-210ENST00000473007 BAZ1AQ9NRL2 1556 aaPredicted RBP6.95□□□□□ -1.3
UBE2D4-210ENST00000473007 MIER1Q8N108 512 aa6.95□□□□□ -1.3
UBE2D4-210ENST00000473007 RNF25Q96BH1 459 aaPredicted RBP6.95□□□□□ -1.3
UBE2D4-210ENST00000473007 RSPH6AQ9H0K4 717 aa6.93□□□□□ -1.3
UBE2D4-210ENST00000473007 SMARCA4P51532 1647 aa6.92□□□□□ -1.3
UBE2D4-210ENST00000473007 ZC3H15Q8WU90 426 aaKnown RBP6.92□□□□□ -1.3
UBE2D4-210ENST00000473007 CECR2Q9BXF3 1484 aa6.91□□□□□ -1.3
UBE2D4-210ENST00000473007 SMARCA2P51531 1590 aa6.91□□□□□ -1.3
UBE2D4-210ENST00000473007 CC2D2AQ9P2K1 1620 aa6.9□□□□□ -1.3
UBE2D4-210ENST00000473007 SLC24A3Q9HC58 644 aa6.9□□□□□ -1.3
UBE2D4-210ENST00000473007 HMGXB3Q12766 1538 aa6.9□□□□□ -1.31
UBE2D4-210ENST00000473007 KCNV2Q8TDN2 545 aa6.89□□□□□ -1.31
UBE2D4-210ENST00000473007 POLA2Q14181 598 aa6.88□□□□□ -1.31
UBE2D4-210ENST00000473007 NCAPD3P42695 1498 aa6.87□□□□□ -1.31
UBE2D4-210ENST00000473007 ZBTB47Q9UFB7 747 aaPredicted RBP6.87□□□□□ -1.31
UBE2D4-210ENST00000473007 ARID3AQ99856 593 aa6.86□□□□□ -1.31
UBE2D4-210ENST00000473007 CCDC9Q9Y3X0 531 aaKnown RBP6.86□□□□□ -1.31
UBE2D4-210ENST00000473007 RIOK3O14730 519 aaKnown RBP6.85□□□□□ -1.31
UBE2D4-210ENST00000473007 C1orf115Q9H7X2 142 aa6.84□□□□□ -1.31
UBE2D4-210ENST00000473007 WDR70Q9NW82 654 aa6.84□□□□□ -1.31
UBE2D4-210ENST00000473007 STK25O00506 426 aa6.83□□□□□ -1.32
UBE2D4-210ENST00000473007 RYDENQ9NUL5 291 aaKnown RBP6.83□□□□□ -1.32
UBE2D4-210ENST00000473007 ATAD2BQ9ULI0 1458 aa6.82□□□□□ -1.32
UBE2D4-210ENST00000473007 ZBTB7CA1YPR0 619 aa6.82□□□□□ -1.32
UBE2D4-210ENST00000473007 PLEKHG5O94827 1062 aa6.81□□□□□ -1.32
UBE2D4-210ENST00000473007 GSE1Q14687 1217 aa6.81□□□□□ -1.32
UBE2D4-210ENST00000473007 ZNF692Q9BU19 519 aaPredicted RBP6.8□□□□□ -1.32
UBE2D4-210ENST00000473007 MROH2BQ7Z745 1585 aa6.79□□□□□ -1.32
UBE2D4-210ENST00000473007 VGFO15240 615 aaPredicted RBP6.79□□□□□ -1.32
UBE2D4-210ENST00000473007 PDIA4P13667 645 aaKnown RBP6.79□□□□□ -1.32
UBE2D4-210ENST00000473007 ZMYND10O75800 440 aa6.78□□□□□ -1.32
UBE2D4-210ENST00000473007 CADPS2Q86UW7 1296 aa6.78□□□□□ -1.32
UBE2D4-210ENST00000473007 ZBTB12Q9Y330 459 aaPredicted RBP6.78□□□□□ -1.32
UBE2D4-210ENST00000473007 NECTIN2Q92692 538 aa6.77□□□□□ -1.33
UBE2D4-210ENST00000473007 RSF1Q96T23 1441 aaPredicted RBP6.76□□□□□ -1.33
UBE2D4-210ENST00000473007 SGIP1Q9BQI5 828 aa6.76□□□□□ -1.33
UBE2D4-210ENST00000473007 CUX2O14529 1486 aa6.76□□□□□ -1.33
UBE2D4-210ENST00000473007 BAZ1BQ9UIG0 1483 aaKnown RBP6.76□□□□□ -1.33
UBE2D4-210ENST00000473007 TESPA1A2RU30 521 aaPredicted RBP6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 IL27Q8NEV9 243 aa6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 ARHGEF1Q92888 912 aaKnown RBP6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 STK24Q9Y6E0 443 aa6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 PRDM2Q13029 1718 aa6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 TOP2AP11388 1531 aaKnown RBP6.75□□□□□ -1.33
UBE2D4-210ENST00000473007 WIZO95785 1651 aa6.74□□□□□ -1.33
UBE2D4-210ENST00000473007 APBB1O00213 710 aa6.74□□□□□ -1.33
UBE2D4-210ENST00000473007 BCL11BQ9C0K0 894 aaPredicted RBP6.74□□□□□ -1.33
UBE2D4-210ENST00000473007 SPINK5Q9NQ38 1064 aaPredicted RBP6.74□□□□□ -1.33
UBE2D4-210ENST00000473007 SSUH2Q9Y2M2 353 aa6.74□□□□□ -1.33
UBE2D4-210ENST00000473007 LOC105371045A0A1W2PR82 267 aa6.73□□□□□ -1.33
UBE2D4-210ENST00000473007 ARID3CA6NKF2 412 aa6.73□□□□□ -1.33
UBE2D4-210ENST00000473007 BARGINQ6ZT62 677 aa6.73□□□□□ -1.33
UBE2D4-210ENST00000473007 GPBP1L1Q9HC44 474 aaPredicted RBP6.73□□□□□ -1.33
UBE2D4-210ENST00000473007 SEMA3EO15041 775 aa6.72□□□□□ -1.33
UBE2D4-210ENST00000473007 NUBP1P53384 320 aa6.72□□□□□ -1.33
UBE2D4-210ENST00000473007 LAMC3Q9Y6N6 1575 aa6.71□□□□□ -1.34
UBE2D4-210ENST00000473007 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.71□□□□□ -1.34
UBE2D4-210ENST00000473007 MKRN3Q13064 507 aaKnown RBP6.71□□□□□ -1.34
UBE2D4-210ENST00000473007 DCAF8Q5TAQ9 597 aa6.71□□□□□ -1.34
UBE2D4-210ENST00000473007 ZFP91Q96JP5 570 aaPredicted RBP6.71□□□□□ -1.34
UBE2D4-210ENST00000473007 C1QBPQ07021 282 aaKnown RBP6.7□□□□□ -1.34
UBE2D4-210ENST00000473007 SPDYE2BA6NHP3 402 aa6.69□□□□□ -1.34
UBE2D4-210ENST00000473007 SPDYE6P0CI01 402 aa6.69□□□□□ -1.34
UBE2D4-210ENST00000473007 SPDYE2Q495Y8 402 aa6.69□□□□□ -1.34
UBE2D4-210ENST00000473007 AK7Q96M32 723 aa6.69□□□□□ -1.34
UBE2D4-210ENST00000473007 CHRM1P11229 460 aaPredicted RBP6.67□□□□□ -1.34
UBE2D4-210ENST00000473007 KDM4CQ9H3R0 1056 aa6.67□□□□□ -1.34
UBE2D4-210ENST00000473007 PELP1Q8IZL8 1130 aaKnown RBP6.66□□□□□ -1.34
UBE2D4-210ENST00000473007 E2F4Q16254 413 aa6.65□□□□□ -1.34
UBE2D4-210ENST00000473007 POTEDQ86YR6 584 aa6.65□□□□□ -1.34
UBE2D4-210ENST00000473007 KCTD17Q8N5Z5 321 aa6.65□□□□□ -1.34
UBE2D4-210ENST00000473007 SMYD5Q6GMV2 418 aa6.64□□□□□ -1.35
UBE2D4-210ENST00000473007 CFTRP13569 1480 aa6.64□□□□□ -1.35
UBE2D4-210ENST00000473007 CAPN15O75808 1086 aa6.63□□□□□ -1.35
UBE2D4-210ENST00000473007 CCDC82Q8N4S0 544 aa6.63□□□□□ -1.35
UBE2D4-210ENST00000473007 RNF39Q9H2S5 420 aa6.63□□□□□ -1.35
UBE2D4-210ENST00000473007 FLIIQ13045 1269 aa6.62□□□□□ -1.35
UBE2D4-210ENST00000473007 TRAIPQ9BWF2 469 aa6.62□□□□□ -1.35
UBE2D4-210ENST00000473007 RAD21O60216 631 aa6.61□□□□□ -1.35
UBE2D4-210ENST00000473007 OSCARQ8IYS5 282 aa6.61□□□□□ -1.35
UBE2D4-210ENST00000473007 ERCC6Q03468 1493 aa6.6□□□□□ -1.35
UBE2D4-210ENST00000473007 CADPSQ9ULU8 1353 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms