RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
COL6A3-209ENST00000472056 CDCA8Q53HL2 280 aa17.31■□□□□ 0.36
COL6A3-209ENST00000472056 ARXQ96QS3 562 aa17.31■□□□□ 0.36
COL6A3-209ENST00000472056 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
COL6A3-209ENST00000472056 USP35Q9P2H5 1018 aa17.28■□□□□ 0.36
COL6A3-209ENST00000472056 MSNP26038 577 aaKnown RBP17.26■□□□□ 0.35
COL6A3-209ENST00000472056 PPP4R2Q9NY27 417 aa17.26■□□□□ 0.35
COL6A3-209ENST00000472056 RSF1Q96T23 1441 aaPredicted RBP17.25■□□□□ 0.35
COL6A3-209ENST00000472056 ESF1Q9H501 851 aaKnown RBP17.19■□□□□ 0.34
COL6A3-209ENST00000472056 SCRIBQ14160 1630 aa17.17■□□□□ 0.34
COL6A3-209ENST00000472056 GOLGA3Q08378 1498 aa17.16■□□□□ 0.34
COL6A3-209ENST00000472056 CFAP53Q96M91 514 aa17.16■□□□□ 0.34
COL6A3-209ENST00000472056 ZCCHC6Q5VYS8 1495 aaKnown RBP17.16■□□□□ 0.34
COL6A3-209ENST00000472056 FTSJ3Q8IY81 847 aaKnown RBP17.15■□□□□ 0.34
COL6A3-209ENST00000472056 CLIP1P30622 1438 aa17.14■□□□□ 0.33
COL6A3-209ENST00000472056 MIER1Q8N108 512 aa17.14■□□□□ 0.33
COL6A3-209ENST00000472056 PNNQ9H307 717 aaKnown RBP17.14■□□□□ 0.33
COL6A3-209ENST00000472056 MTUS2Q5JR59 1369 aa17.13■□□□□ 0.33
COL6A3-209ENST00000472056 TIMELESSQ9UNS1 1208 aa17.11■□□□□ 0.33
COL6A3-209ENST00000472056 HSCBQ8IWL3 235 aa17.09■□□□□ 0.33
COL6A3-209ENST00000472056 SYAP1Q96A49 352 aaPredicted RBP17.09■□□□□ 0.33
COL6A3-209ENST00000472056 HAP1P54257 671 aaPredicted RBP17.08■□□□□ 0.33
COL6A3-209ENST00000472056 STAG3Q9UJ98 1225 aa17.08■□□□□ 0.32
COL6A3-209ENST00000472056 KIAA2012Q0VF49 1180 aa17.07■□□□□ 0.32
COL6A3-209ENST00000472056 HSP90AB1P08238 724 aaKnown RBP17.07■□□□□ 0.32
COL6A3-209ENST00000472056 TSPY4P0CV99 314 aa17.06■□□□□ 0.32
COL6A3-209ENST00000472056 TSPY10P0CW01 314 aa17.06■□□□□ 0.32
COL6A3-209ENST00000472056 GBP4Q96PP9 640 aa17.06■□□□□ 0.32
COL6A3-209ENST00000472056 MCCP23508 829 aa17.06■□□□□ 0.32
COL6A3-209ENST00000472056 KNSTRNQ9Y448 316 aa17.03■□□□□ 0.32
COL6A3-209ENST00000472056 CCER2I3L3R5 266 aa17.02■□□□□ 0.32
COL6A3-209ENST00000472056 RSPH6AQ9H0K4 717 aa17.02■□□□□ 0.32
COL6A3-209ENST00000472056 ZNF777Q9ULD5 760 aaPredicted RBP17.02■□□□□ 0.32
COL6A3-209ENST00000472056 GOLGA6L4A6NEF3 574 aa17■□□□□ 0.31
COL6A3-209ENST00000472056 CEP164Q9UPV0 1460 aa17■□□□□ 0.31
COL6A3-209ENST00000472056 DEKP35659 375 aaKnown RBP17■□□□□ 0.31
COL6A3-209ENST00000472056 HTATSF1O43719 755 aaKnown RBP16.99■□□□□ 0.31
COL6A3-209ENST00000472056 TNNT3P45378 269 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-209ENST00000472056 PHF14O94880 888 aa16.98■□□□□ 0.31
COL6A3-209ENST00000472056 SUPT16HQ9Y5B9 1047 aaKnown RBP16.96■□□□□ 0.31
COL6A3-209ENST00000472056 GOLGA6L1Q8N7Z2 621 aa16.96■□□□□ 0.31
COL6A3-209ENST00000472056 CCDC34Q96HJ3 373 aa16.96■□□□□ 0.31
COL6A3-209ENST00000472056 SALL2Q9Y467 1007 aaPredicted RBP16.95■□□□□ 0.3
COL6A3-209ENST00000472056 CEP162Q5TB80 1403 aa16.95■□□□□ 0.3
COL6A3-209ENST00000472056 NUDCQ9Y266 331 aa16.94■□□□□ 0.3
COL6A3-209ENST00000472056 FHAD1B1AJZ9 1412 aa16.94■□□□□ 0.3
COL6A3-209ENST00000472056 CSPP1Q1MSJ5 1256 aa16.94■□□□□ 0.3
COL6A3-209ENST00000472056 FBLN2P98095 1184 aa16.92■□□□□ 0.3
COL6A3-209ENST00000472056 ABCC9O60706 1549 aa16.92■□□□□ 0.3
COL6A3-209ENST00000472056 CALRP27797 417 aaKnown RBP16.91■□□□□ 0.3
COL6A3-209ENST00000472056 CHMP4AQ9BY43 222 aa16.91■□□□□ 0.3
COL6A3-209ENST00000472056 TCERG1O14776 1098 aaKnown RBP16.91■□□□□ 0.3
COL6A3-209ENST00000472056 MAPK8IP3Q9UPT6 1336 aa16.89■□□□□ 0.3
COL6A3-209ENST00000472056 SETQ01105 290 aaPredicted RBP16.89■□□□□ 0.29
COL6A3-209ENST00000472056 DRC7Q8IY82 874 aa16.89■□□□□ 0.29
COL6A3-209ENST00000472056 TPM4P67936 248 aa16.89■□□□□ 0.29
COL6A3-209ENST00000472056 RB1CC1Q8TDY2 1594 aa16.88■□□□□ 0.29
COL6A3-209ENST00000472056 PHLDB1Q86UU1 1377 aa16.87■□□□□ 0.29
COL6A3-209ENST00000472056 FGD1P98174 961 aa16.87■□□□□ 0.29
COL6A3-209ENST00000472056 IRX6P78412 446 aaPredicted RBP16.86■□□□□ 0.29
COL6A3-209ENST00000472056 LAS1LQ9Y4W2 734 aaKnown RBP16.86■□□□□ 0.29
COL6A3-209ENST00000472056 NPM1P06748 294 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL6A3-209ENST00000472056 P3H3Q8IVL6 736 aa16.85■□□□□ 0.29
COL6A3-209ENST00000472056 TNIKQ9UKE5 1360 aa16.85■□□□□ 0.29
COL6A3-209ENST00000472056 CHGAP10645 457 aaKnown RBP16.84■□□□□ 0.29
COL6A3-209ENST00000472056 HSP90AA2PQ14568 343 aaPredicted RBP16.83■□□□□ 0.29
COL6A3-209ENST00000472056 PLCB2Q00722 1185 aa16.83■□□□□ 0.28
COL6A3-209ENST00000472056 AMER1Q5JTC6 1135 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-209ENST00000472056 RBM19Q9Y4C8 960 aaKnown RBP16.83■□□□□ 0.28
COL6A3-209ENST00000472056 CALD1Q05682 793 aaKnown RBP16.82■□□□□ 0.28
COL6A3-209ENST00000472056 GOLGA6L3A6NEY3 463 aa16.82■□□□□ 0.28
COL6A3-209ENST00000472056 IPO8O15397 1037 aaKnown RBP16.82■□□□□ 0.28
COL6A3-209ENST00000472056 KCNJ4P48050 445 aa16.82■□□□□ 0.28
COL6A3-209ENST00000472056 MTERF4Q7Z6M4 381 aaKnown RBP16.8■□□□□ 0.28
COL6A3-209ENST00000472056 DDX11L8A8MPP1 907 aa16.8■□□□□ 0.28
COL6A3-209ENST00000472056 CHMP4CQ96CF2 233 aa16.79■□□□□ 0.28
COL6A3-209ENST00000472056 NOC3LQ8WTT2 800 aaKnown RBP16.79■□□□□ 0.28
COL6A3-209ENST00000472056 RTN4Q9NQC3 1192 aaKnown RBP16.78■□□□□ 0.28
COL6A3-209ENST00000472056 KIF27Q86VH2 1401 aa16.78■□□□□ 0.28
COL6A3-209ENST00000472056 A0A0U1RQG5 324 aaPredicted RBP16.77■□□□□ 0.28
COL6A3-209ENST00000472056 GPS2Q13227 327 aa16.77■□□□□ 0.28
COL6A3-209ENST00000472056 NACADO15069 1562 aa16.77■□□□□ 0.27
COL6A3-209ENST00000472056 HDAC5Q9UQL6 1122 aa16.77■□□□□ 0.27
COL6A3-209ENST00000472056 IPO9Q96P70 1041 aaKnown RBP16.77■□□□□ 0.27
COL6A3-209ENST00000472056 SKOR2Q2VWA4 1001 aaPredicted RBP16.76■□□□□ 0.27
COL6A3-209ENST00000472056 KDM2AQ9Y2K7 1162 aa16.75■□□□□ 0.27
COL6A3-209ENST00000472056 KIAA1211Q6ZU35 1233 aa16.75■□□□□ 0.27
COL6A3-209ENST00000472056 RGS3P49796 1198 aa16.75■□□□□ 0.27
COL6A3-209ENST00000472056 CARD11Q9BXL7 1154 aa16.73■□□□□ 0.27
COL6A3-209ENST00000472056 KIF3AQ9Y496 699 aa16.73■□□□□ 0.27
COL6A3-209ENST00000472056 ROCK2O75116 1388 aaKnown RBP16.73■□□□□ 0.27
COL6A3-209ENST00000472056 PMFBP1Q8TBY8 1022 aa16.72■□□□□ 0.27
COL6A3-209ENST00000472056 CCNB3Q8WWL7 1395 aa16.72■□□□□ 0.27
COL6A3-209ENST00000472056 MAP7D2Q96T17 732 aa16.71■□□□□ 0.27
COL6A3-209ENST00000472056 RWDD1Q9H446 243 aaPredicted RBP16.71■□□□□ 0.26
COL6A3-209ENST00000472056 KTN1Q86UP2 1357 aaKnown RBP16.7■□□□□ 0.26
COL6A3-209ENST00000472056 BAZ1AQ9NRL2 1556 aaPredicted RBP16.7■□□□□ 0.26
COL6A3-209ENST00000472056 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.26
COL6A3-209ENST00000472056 OS9Q13438 667 aaPredicted RBP16.7■□□□□ 0.26
COL6A3-209ENST00000472056 RALBP1Q15311 655 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms