RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 JPH4Q96JJ6 628 aa14.18□□□□□ -0.14
USP48-207ENST00000471752 ERICH3Q5RHP9 1530 aa14.18□□□□□ -0.14
USP48-207ENST00000471752 PRG4Q92954 1404 aaPredicted RBP14.15□□□□□ -0.14
USP48-207ENST00000471752 SHROOM2Q13796 1616 aa14.11□□□□□ -0.15
USP48-207ENST00000471752 KIF27Q86VH2 1401 aa14.07□□□□□ -0.16
USP48-207ENST00000471752 RUSC2Q8N2Y8 1516 aa14.06□□□□□ -0.16
USP48-207ENST00000471752 TTBK1Q5TCY1 1321 aaPredicted RBP14.06□□□□□ -0.16
USP48-207ENST00000471752 CARMIL1Q5VZK9 1371 aa14.06□□□□□ -0.16
USP48-207ENST00000471752 KIAA0586Q9BVV6 1533 aa14.01□□□□□ -0.17
USP48-207ENST00000471752 FAM69CQ0P6D2 419 aa13.97□□□□□ -0.17
USP48-207ENST00000471752 ADCY10Q96PN6 1610 aa13.93□□□□□ -0.18
USP48-207ENST00000471752 PTPRGP23470 1445 aa13.92□□□□□ -0.18
USP48-207ENST00000471752 CUL7Q14999 1698 aa13.91□□□□□ -0.18
USP48-207ENST00000471752 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP48-207ENST00000471752 ABCC10Q5T3U5 1492 aa13.88□□□□□ -0.19
USP48-207ENST00000471752 DISP1Q96F81 1524 aa13.88□□□□□ -0.19
USP48-207ENST00000471752 KIF13AQ9H1H9 1805 aa13.87□□□□□ -0.19
USP48-207ENST00000471752 TNIKQ9UKE5 1360 aa13.87□□□□□ -0.19
USP48-207ENST00000471752 RAPGEF2Q9Y4G8 1499 aa13.87□□□□□ -0.19
USP48-207ENST00000471752 PLPPR3Q6T4P5 718 aa13.86□□□□□ -0.19
USP48-207ENST00000471752 IQGAP2Q13576 1575 aa13.83□□□□□ -0.19
USP48-207ENST00000471752 MAPKBP1O60336 1514 aa13.82□□□□□ -0.2
USP48-207ENST00000471752 CARMIL2Q6F5E8 1435 aa13.81□□□□□ -0.2
USP48-207ENST00000471752 DIP2BQ9P265 1576 aa13.81□□□□□ -0.2
USP48-207ENST00000471752 P3H3Q8IVL6 736 aa13.79□□□□□ -0.2
USP48-207ENST00000471752 ASXL2Q76L83 1435 aa13.79□□□□□ -0.2
USP48-207ENST00000471752 UACAQ9BZF9 1416 aa13.79□□□□□ -0.2
USP48-207ENST00000471752 ABCC2Q92887 1545 aa13.79□□□□□ -0.2
USP48-207ENST00000471752 PRXQ9BXM0 1461 aa13.78□□□□□ -0.2
USP48-207ENST00000471752 UGGT2Q9NYU1 1516 aa13.78□□□□□ -0.2
USP48-207ENST00000471752 FAM9AQ8IZU1 332 aaPredicted RBP13.77□□□□□ -0.21
USP48-207ENST00000471752 ARID3CA6NKF2 412 aa13.75□□□□□ -0.21
USP48-207ENST00000471752 UHRF1BP1LA0JNW5 1464 aa13.74□□□□□ -0.21
USP48-207ENST00000471752 PLB1Q6P1J6 1458 aa13.74□□□□□ -0.21
USP48-207ENST00000471752 CSRNP3Q8WYN3 585 aa13.74□□□□□ -0.21
USP48-207ENST00000471752 MSH5O43196 834 aa13.73□□□□□ -0.21
USP48-207ENST00000471752 RANGAP1P46060 587 aaPredicted RBP13.73□□□□□ -0.21
USP48-207ENST00000471752 KIAA0556O60303 1618 aa13.72□□□□□ -0.21
USP48-207ENST00000471752 TSPOAP1O95153 1857 aa13.72□□□□□ -0.21
USP48-207ENST00000471752 KDM4FA0A1W2PPD8 638 aa13.72□□□□□ -0.21
USP48-207ENST00000471752 COL17A1Q9UMD9 1497 aaPredicted RBP13.72□□□□□ -0.21
USP48-207ENST00000471752 KDM5BQ9UGL1 1544 aa13.71□□□□□ -0.21
USP48-207ENST00000471752 KCNH8Q96L42 1107 aa13.71□□□□□ -0.21
USP48-207ENST00000471752 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
USP48-207ENST00000471752 EPRSP07814 1512 aaKnown RBP13.69□□□□□ -0.22
USP48-207ENST00000471752 PPRC1Q5VV67 1664 aaKnown RBP13.66□□□□□ -0.22
USP48-207ENST00000471752 ZCCHC11Q5TAX3 1644 aaKnown RBP13.65□□□□□ -0.22
USP48-207ENST00000471752 GLI2P10070 1586 aa13.64□□□□□ -0.23
USP48-207ENST00000471752 KDM6BO15054 1643 aa13.64□□□□□ -0.23
USP48-207ENST00000471752 ABCA8O94911 1581 aa13.62□□□□□ -0.23
USP48-207ENST00000471752 CTTNBP2Q8WZ74 1663 aa13.61□□□□□ -0.23
USP48-207ENST00000471752 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
USP48-207ENST00000471752 PIAS4Q8N2W9 510 aaPredicted RBP13.6□□□□□ -0.23
USP48-207ENST00000471752 ATP10BO94823 1461 aa13.6□□□□□ -0.23
USP48-207ENST00000471752 WDR7Q9Y4E6 1490 aa13.6□□□□□ -0.23
USP48-207ENST00000471752 MAP3K4Q9Y6R4 1608 aa13.57□□□□□ -0.24
USP48-207ENST00000471752 CD109Q6YHK3 1445 aa13.56□□□□□ -0.24
USP48-207ENST00000471752 FHOD3Q2V2M9 1422 aa13.56□□□□□ -0.24
USP48-207ENST00000471752 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
USP48-207ENST00000471752 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
USP48-207ENST00000471752 SAMD9Q5K651 1589 aa13.52□□□□□ -0.25
USP48-207ENST00000471752 NUP153P49790 1475 aaKnown RBP13.49□□□□□ -0.25
USP48-207ENST00000471752 EEA1Q15075 1411 aa13.49□□□□□ -0.25
USP48-207ENST00000471752 RAPGEF3O95398 923 aa13.49□□□□□ -0.25
USP48-207ENST00000471752 MAGI3Q5TCQ9 1506 aa13.49□□□□□ -0.25
USP48-207ENST00000471752 UBTFP17480 764 aaKnown RBP13.48□□□□□ -0.25
USP48-207ENST00000471752 PPP6R1Q9UPN7 881 aa13.48□□□□□ -0.25
USP48-207ENST00000471752 ADGRL1O94910 1474 aa13.48□□□□□ -0.25
USP48-207ENST00000471752 TEX14Q8IWB6 1497 aa13.48□□□□□ -0.25
USP48-207ENST00000471752 ADRA2BP18089 450 aa13.46□□□□□ -0.25
USP48-207ENST00000471752 RAPGEF6Q8TEU7 1601 aa13.44□□□□□ -0.26
USP48-207ENST00000471752 PLEKHD1A6NEE1 506 aa13.42□□□□□ -0.26
USP48-207ENST00000471752 ATP1B4Q9UN42 357 aaPredicted RBP13.42□□□□□ -0.26
USP48-207ENST00000471752 CFAP43Q8NDM7 1665 aa13.41□□□□□ -0.26
USP48-207ENST00000471752 KIF21BO75037 1637 aa13.41□□□□□ -0.26
USP48-207ENST00000471752 CDK13Q14004 1512 aaKnown RBP13.39□□□□□ -0.27
USP48-207ENST00000471752 POTEDQ86YR6 584 aa13.39□□□□□ -0.27
USP48-207ENST00000471752 ARHGAP35Q9NRY4 1499 aa13.39□□□□□ -0.27
USP48-207ENST00000471752 ARAP3Q8WWN8 1544 aa13.39□□□□□ -0.27
USP48-207ENST00000471752 ABCA9Q8IUA7 1624 aa13.38□□□□□ -0.27
USP48-207ENST00000471752 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP48-207ENST00000471752 AKNAQ7Z591 1439 aa13.32□□□□□ -0.28
USP48-207ENST00000471752 EFCAB5A4FU69 1503 aa13.32□□□□□ -0.28
USP48-207ENST00000471752 FRMPD1Q5SYB0 1578 aa13.32□□□□□ -0.28
USP48-207ENST00000471752 NEO1Q92859 1461 aa13.31□□□□□ -0.28
USP48-207ENST00000471752 TTC37Q6PGP7 1564 aa13.31□□□□□ -0.28
USP48-207ENST00000471752 PHLDB1Q86UU1 1377 aa13.3□□□□□ -0.28
USP48-207ENST00000471752 ARID4BQ4LE39 1312 aaPredicted RBP13.29□□□□□ -0.28
USP48-207ENST00000471752 YEATS2Q9ULM3 1422 aa13.28□□□□□ -0.28
USP48-207ENST00000471752 FANCAO15360 1455 aa13.28□□□□□ -0.28
USP48-207ENST00000471752 DENND4BO75064 1496 aaPredicted RBP13.27□□□□□ -0.29
USP48-207ENST00000471752 PLCH2O75038 1416 aa13.26□□□□□ -0.29
USP48-207ENST00000471752 FMN1Q68DA7 1419 aa13.26□□□□□ -0.29
USP48-207ENST00000471752 SCAPERQ9BY12 1400 aa13.25□□□□□ -0.29
USP48-207ENST00000471752 MLECQ14165 292 aa13.25□□□□□ -0.29
USP48-207ENST00000471752 AFAP1Q8N556 730 aa13.25□□□□□ -0.29
USP48-207ENST00000471752 HECW2Q9P2P5 1572 aa13.24□□□□□ -0.29
USP48-207ENST00000471752 ILDR1Q86SU0 546 aaPredicted RBP13.24□□□□□ -0.29
USP48-207ENST00000471752 KIF14Q15058 1648 aa13.23□□□□□ -0.29
USP48-207ENST00000471752 PTPRMP28827 1452 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms