RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CLASP1Q7Z460 1538 aa16.28■□□□□ 0.2
SF3A1-207ENST00000471342 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
SF3A1-207ENST00000471342 KIAA0586Q9BVV6 1533 aa16.27■□□□□ 0.2
SF3A1-207ENST00000471342 FBLN2P98095 1184 aa16.25■□□□□ 0.19
SF3A1-207ENST00000471342 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
SF3A1-207ENST00000471342 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
SF3A1-207ENST00000471342 UBTFP17480 764 aaKnown RBP16.18■□□□□ 0.18
SF3A1-207ENST00000471342 JPH4Q96JJ6 628 aa16.18■□□□□ 0.18
SF3A1-207ENST00000471342 SHROOM2Q13796 1616 aa16.18■□□□□ 0.18
SF3A1-207ENST00000471342 DISP1Q96F81 1524 aa16.18■□□□□ 0.18
SF3A1-207ENST00000471342 ERCC6L2Q5T890 1561 aa16.16■□□□□ 0.18
SF3A1-207ENST00000471342 ARHGAP35Q9NRY4 1499 aa16.15■□□□□ 0.18
SF3A1-207ENST00000471342 IQGAP2Q13576 1575 aa16.14■□□□□ 0.17
SF3A1-207ENST00000471342 CEP162Q5TB80 1403 aa16.12■□□□□ 0.17
SF3A1-207ENST00000471342 SAMD9Q5K651 1589 aa16.12■□□□□ 0.17
SF3A1-207ENST00000471342 CTTNBP2Q8WZ74 1663 aa16.11■□□□□ 0.17
SF3A1-207ENST00000471342 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
SF3A1-207ENST00000471342 PRG4Q92954 1404 aaPredicted RBP16.08■□□□□ 0.16
SF3A1-207ENST00000471342 CLIP1P30622 1438 aa16.07■□□□□ 0.16
SF3A1-207ENST00000471342 KIAA0556O60303 1618 aa16.04■□□□□ 0.16
SF3A1-207ENST00000471342 FHOD3Q2V2M9 1422 aa16.02■□□□□ 0.16
SF3A1-207ENST00000471342 EFCAB5A4FU69 1503 aa16.01■□□□□ 0.15
SF3A1-207ENST00000471342 P3H3Q8IVL6 736 aa16.01■□□□□ 0.15
SF3A1-207ENST00000471342 RANGAP1P46060 587 aaPredicted RBP16■□□□□ 0.15
SF3A1-207ENST00000471342 ARHGEF11O15085 1522 aa15.98■□□□□ 0.15
SF3A1-207ENST00000471342 CARMIL2Q6F5E8 1435 aa15.93■□□□□ 0.14
SF3A1-207ENST00000471342 PTPRGP23470 1445 aa15.92■□□□□ 0.14
SF3A1-207ENST00000471342 ABCA8O94911 1581 aa15.92■□□□□ 0.14
SF3A1-207ENST00000471342 PLB1Q6P1J6 1458 aa15.91■□□□□ 0.14
SF3A1-207ENST00000471342 RIMBP3CA6NJZ7 1639 aa15.91■□□□□ 0.14
SF3A1-207ENST00000471342 RIMBP3BA6NNM3 1639 aa15.91■□□□□ 0.14
SF3A1-207ENST00000471342 RIMBP3Q9UFD9 1639 aa15.91■□□□□ 0.14
SF3A1-207ENST00000471342 VPS8Q8N3P4 1428 aa15.9■□□□□ 0.14
SF3A1-207ENST00000471342 CASKIN1Q8WXD9 1431 aa15.87■□□□□ 0.13
SF3A1-207ENST00000471342 NUP153P49790 1475 aaKnown RBP15.86■□□□□ 0.13
SF3A1-207ENST00000471342 FMN1Q68DA7 1419 aa15.85■□□□□ 0.13
SF3A1-207ENST00000471342 UHRF1BP1LA0JNW5 1464 aa15.84■□□□□ 0.13
SF3A1-207ENST00000471342 UACAQ9BZF9 1416 aa15.84■□□□□ 0.13
SF3A1-207ENST00000471342 PCF11O94913 1555 aaKnown RBP15.83■□□□□ 0.12
SF3A1-207ENST00000471342 ATP10BO94823 1461 aa15.81■□□□□ 0.12
SF3A1-207ENST00000471342 ADCY10Q96PN6 1610 aa15.8■□□□□ 0.12
SF3A1-207ENST00000471342 LRRIQ1Q96JM4 1722 aa15.8■□□□□ 0.12
SF3A1-207ENST00000471342 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
SF3A1-207ENST00000471342 FYCO1Q9BQS8 1478 aa15.78■□□□□ 0.12
SF3A1-207ENST00000471342 RAPGEF6Q8TEU7 1601 aa15.78■□□□□ 0.12
SF3A1-207ENST00000471342 KDM5BQ9UGL1 1544 aa15.78■□□□□ 0.12
SF3A1-207ENST00000471342 TTBK1Q5TCY1 1321 aaPredicted RBP15.77■□□□□ 0.12
SF3A1-207ENST00000471342 CYB5RLQ6IPT4 315 aa15.77■□□□□ 0.12
SF3A1-207ENST00000471342 EPRSP07814 1512 aaKnown RBP15.77■□□□□ 0.11
SF3A1-207ENST00000471342 MAGI3Q5TCQ9 1506 aa15.77■□□□□ 0.11
SF3A1-207ENST00000471342 KANK4Q5T7N3 995 aaPredicted RBP15.76■□□□□ 0.11
SF3A1-207ENST00000471342 MAP3K1Q13233 1512 aa15.74■□□□□ 0.11
SF3A1-207ENST00000471342 CDK13Q14004 1512 aaKnown RBP15.74■□□□□ 0.11
SF3A1-207ENST00000471342 ARID3CA6NKF2 412 aa15.69■□□□□ 0.1
SF3A1-207ENST00000471342 HECW1Q76N89 1606 aa15.68■□□□□ 0.1
SF3A1-207ENST00000471342 TIAM1Q13009 1591 aa15.68■□□□□ 0.1
SF3A1-207ENST00000471342 LRRC9Q6ZRR7 1453 aa15.65■□□□□ 0.1
SF3A1-207ENST00000471342 ZCCHC11Q5TAX3 1644 aaKnown RBP15.65■□□□□ 0.1
SF3A1-207ENST00000471342 CCDC18Q5T9S5 1454 aa15.64■□□□□ 0.09
SF3A1-207ENST00000471342 CFAP43Q8NDM7 1665 aa15.63■□□□□ 0.09
SF3A1-207ENST00000471342 TROQ12816 1431 aaPredicted RBP15.6■□□□□ 0.09
SF3A1-207ENST00000471342 ASXL2Q76L83 1435 aa15.6■□□□□ 0.09
SF3A1-207ENST00000471342 ABCC10Q5T3U5 1492 aa15.6■□□□□ 0.09
SF3A1-207ENST00000471342 MAPKBP1O60336 1514 aa15.6■□□□□ 0.09
SF3A1-207ENST00000471342 ATP1B4Q9UN42 357 aaPredicted RBP15.6■□□□□ 0.09
SF3A1-207ENST00000471342 PPARGC1BQ86YN6 1023 aaKnown RBP15.59■□□□□ 0.09
SF3A1-207ENST00000471342 WDR7Q9Y4E6 1490 aa15.55■□□□□ 0.08
SF3A1-207ENST00000471342 PHLDB1Q86UU1 1377 aa15.55■□□□□ 0.08
SF3A1-207ENST00000471342 KIF14Q15058 1648 aa15.54■□□□□ 0.08
SF3A1-207ENST00000471342 PLEKHD1A6NEE1 506 aa15.53■□□□□ 0.08
SF3A1-207ENST00000471342 EHBP1L1Q8N3D4 1523 aa15.53■□□□□ 0.08
SF3A1-207ENST00000471342 NCOA2Q15596 1464 aa15.52■□□□□ 0.08
SF3A1-207ENST00000471342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.52■□□□□ 0.07
SF3A1-207ENST00000471342 MTUS2Q5JR59 1369 aa15.5■□□□□ 0.07
SF3A1-207ENST00000471342 GPATCH8Q9UKJ3 1502 aaKnown RBP15.5■□□□□ 0.07
SF3A1-207ENST00000471342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
SF3A1-207ENST00000471342 GLI2P10070 1586 aa15.47■□□□□ 0.07
SF3A1-207ENST00000471342 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
SF3A1-207ENST00000471342 TTC37Q6PGP7 1564 aa15.47■□□□□ 0.07
SF3A1-207ENST00000471342 CDK11AQ9UQ88 783 aaPredicted RBP15.47■□□□□ 0.07
SF3A1-207ENST00000471342 NPM1P06748 294 aaKnown RBP eCLIP15.46■□□□□ 0.07
SF3A1-207ENST00000471342 DIP2BQ9P265 1576 aa15.45■□□□□ 0.06
SF3A1-207ENST00000471342 KCNH8Q96L42 1107 aa15.45■□□□□ 0.06
SF3A1-207ENST00000471342 ABCA9Q8IUA7 1624 aa15.45■□□□□ 0.06
SF3A1-207ENST00000471342 PLCH2O75038 1416 aa15.43■□□□□ 0.06
SF3A1-207ENST00000471342 RRBP1Q9P2E9 1410 aaKnown RBP15.43■□□□□ 0.06
SF3A1-207ENST00000471342 ZNF644Q9H582 1327 aaPredicted RBP15.42■□□□□ 0.06
SF3A1-207ENST00000471342 APLP2Q06481 763 aa15.41■□□□□ 0.06
SF3A1-207ENST00000471342 MYOM3Q5VTT5 1437 aa15.41■□□□□ 0.06
SF3A1-207ENST00000471342 SUPT6HQ7KZ85 1726 aaKnown RBP15.4■□□□□ 0.06
SF3A1-207ENST00000471342 TCOF1Q13428 1488 aaKnown RBP15.4■□□□□ 0.06
SF3A1-207ENST00000471342 FGD6Q6ZV73 1430 aa15.39■□□□□ 0.05
SF3A1-207ENST00000471342 MAP3K4Q9Y6R4 1608 aa15.39■□□□□ 0.05
SF3A1-207ENST00000471342 PPRC1Q5VV67 1664 aaKnown RBP15.38■□□□□ 0.05
SF3A1-207ENST00000471342 ARHGEF12Q9NZN5 1544 aa15.38■□□□□ 0.05
SF3A1-207ENST00000471342 FAM69CQ0P6D2 419 aa15.38■□□□□ 0.05
SF3A1-207ENST00000471342 ARAP3Q8WWN8 1544 aa15.38■□□□□ 0.05
SF3A1-207ENST00000471342 MIA2Q96PC5 1412 aa15.37■□□□□ 0.05
SF3A1-207ENST00000471342 KIF13AQ9H1H9 1805 aa15.37■□□□□ 0.05
SF3A1-207ENST00000471342 MBD5Q9P267 1494 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms