RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 RANGAP1P46060 587 aaPredicted RBP26.08■■□□□ 1.77
SMARCD3-206ENST00000470588 ZEB1P37275 1124 aaPredicted RBP26.05■■□□□ 1.76
SMARCD3-206ENST00000470588 APLP2Q06481 763 aa26.05■■□□□ 1.76
SMARCD3-206ENST00000470588 ARAP1Q96P48 1450 aa26.02■■□□□ 1.76
SMARCD3-206ENST00000470588 SNAPC4Q5SXM2 1469 aa25.99■■□□□ 1.75
SMARCD3-206ENST00000470588 MAGI1Q96QZ7 1491 aaPredicted RBP25.97■■□□□ 1.75
SMARCD3-206ENST00000470588 TTBK1Q5TCY1 1321 aaPredicted RBP25.97■■□□□ 1.75
SMARCD3-206ENST00000470588 ARHGAP35Q9NRY4 1499 aa25.93■■□□□ 1.74
SMARCD3-206ENST00000470588 EFCAB5A4FU69 1503 aa25.91■■□□□ 1.74
SMARCD3-206ENST00000470588 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
SMARCD3-206ENST00000470588 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
SMARCD3-206ENST00000470588 IQGAP2Q13576 1575 aa25.81■■□□□ 1.72
SMARCD3-206ENST00000470588 CHMP7Q8WUX9 453 aaPredicted RBP25.79■■□□□ 1.72
SMARCD3-206ENST00000470588 SAMD9Q5K651 1589 aa25.76■■□□□ 1.71
SMARCD3-206ENST00000470588 KIAA0586Q9BVV6 1533 aa25.72■■□□□ 1.71
SMARCD3-206ENST00000470588 FBLN2P98095 1184 aa25.7■■□□□ 1.7
SMARCD3-206ENST00000470588 FHOD3Q2V2M9 1422 aa25.69■■□□□ 1.7
SMARCD3-206ENST00000470588 KANK4Q5T7N3 995 aaPredicted RBP25.68■■□□□ 1.7
SMARCD3-206ENST00000470588 MAP3K1Q13233 1512 aa25.67■■□□□ 1.7
SMARCD3-206ENST00000470588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.67■■□□□ 1.7
SMARCD3-206ENST00000470588 P3H3Q8IVL6 736 aa25.67■■□□□ 1.7
SMARCD3-206ENST00000470588 CCER1Q8TC90 406 aaPredicted RBP25.67■■□□□ 1.7
SMARCD3-206ENST00000470588 CEP170Q5SW79 1584 aa25.66■■□□□ 1.7
SMARCD3-206ENST00000470588 UGGT2Q9NYU1 1516 aa25.66■■□□□ 1.7
SMARCD3-206ENST00000470588 FMN1Q68DA7 1419 aa25.65■■□□□ 1.7
SMARCD3-206ENST00000470588 NUP160Q12769 1436 aa25.63■■□□□ 1.69
SMARCD3-206ENST00000470588 CHD1O14646 1710 aa25.61■■□□□ 1.69
SMARCD3-206ENST00000470588 PCF11O94913 1555 aaKnown RBP25.61■■□□□ 1.69
SMARCD3-206ENST00000470588 FYCO1Q9BQS8 1478 aa25.59■■□□□ 1.69
SMARCD3-206ENST00000470588 CASKIN1Q8WXD9 1431 aa25.56■■□□□ 1.68
SMARCD3-206ENST00000470588 HNRNPUL2Q1KMD3 747 aaKnown RBP25.55■■□□□ 1.68
SMARCD3-206ENST00000470588 TIAM1Q13009 1591 aa25.54■■□□□ 1.68
SMARCD3-206ENST00000470588 KIAA0556O60303 1618 aa25.54■■□□□ 1.68
SMARCD3-206ENST00000470588 CFAP43Q8NDM7 1665 aa25.52■■□□□ 1.68
SMARCD3-206ENST00000470588 RRBP1Q9P2E9 1410 aaKnown RBP25.5■■□□□ 1.67
SMARCD3-206ENST00000470588 DISP1Q96F81 1524 aa25.48■■□□□ 1.67
SMARCD3-206ENST00000470588 ATP1B4Q9UN42 357 aaPredicted RBP25.47■■□□□ 1.67
SMARCD3-206ENST00000470588 CARMIL2Q6F5E8 1435 aa25.46■■□□□ 1.67
SMARCD3-206ENST00000470588 LRRC9Q6ZRR7 1453 aa25.46■■□□□ 1.67
SMARCD3-206ENST00000470588 HECW1Q76N89 1606 aa25.42■■□□□ 1.66
SMARCD3-206ENST00000470588 JPH4Q96JJ6 628 aa25.41■■□□□ 1.66
SMARCD3-206ENST00000470588 CCNB3Q8WWL7 1395 aa25.4■■□□□ 1.66
SMARCD3-206ENST00000470588 CCDC18Q5T9S5 1454 aa25.36■■□□□ 1.65
SMARCD3-206ENST00000470588 LRRIQ1Q96JM4 1722 aa25.33■■□□□ 1.65
SMARCD3-206ENST00000470588 SHROOM2Q13796 1616 aa25.32■■□□□ 1.64
SMARCD3-206ENST00000470588 RAPGEF6Q8TEU7 1601 aa25.31■■□□□ 1.64
SMARCD3-206ENST00000470588 PRG4Q92954 1404 aaPredicted RBP25.28■■□□□ 1.64
SMARCD3-206ENST00000470588 CLASP1Q7Z460 1538 aa25.27■■□□□ 1.64
SMARCD3-206ENST00000470588 PHLDB1Q86UU1 1377 aa25.25■■□□□ 1.63
SMARCD3-206ENST00000470588 MTUS2Q5JR59 1369 aa25.24■■□□□ 1.63
SMARCD3-206ENST00000470588 EPRSP07814 1512 aaKnown RBP25.24■■□□□ 1.63
SMARCD3-206ENST00000470588 EHBP1L1Q8N3D4 1523 aa25.23■■□□□ 1.63
SMARCD3-206ENST00000470588 SUPT6HQ7KZ85 1726 aaKnown RBP25.18■■□□□ 1.62
SMARCD3-206ENST00000470588 CLSPNQ9HAW4 1339 aa25.17■■□□□ 1.62
SMARCD3-206ENST00000470588 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.17■■□□□ 1.62
SMARCD3-206ENST00000470588 NUP153P49790 1475 aaKnown RBP25.17■■□□□ 1.62
SMARCD3-206ENST00000470588 CDK13Q14004 1512 aaKnown RBP25.16■■□□□ 1.62
SMARCD3-206ENST00000470588 ABCA8O94911 1581 aa25.14■■□□□ 1.62
SMARCD3-206ENST00000470588 PTPRGP23470 1445 aa25.14■■□□□ 1.62
SMARCD3-206ENST00000470588 PLB1Q6P1J6 1458 aa25.14■■□□□ 1.62
SMARCD3-206ENST00000470588 ITGAEP38570 1179 aa25.11■■□□□ 1.61
SMARCD3-206ENST00000470588 FAM50AQ14320 339 aaKnown RBP25.1■■□□□ 1.61
SMARCD3-206ENST00000470588 CDK11AQ9UQ88 783 aaPredicted RBP25.1■■□□□ 1.61
SMARCD3-206ENST00000470588 DHX57Q6P158 1386 aaKnown RBP25.09■■□□□ 1.61
SMARCD3-206ENST00000470588 MAGI3Q5TCQ9 1506 aa25.07■■□□□ 1.6
SMARCD3-206ENST00000470588 NCOA2Q15596 1464 aa25.07■■□□□ 1.6
SMARCD3-206ENST00000470588 ARID3CA6NKF2 412 aa25.05■■□□□ 1.6
SMARCD3-206ENST00000470588 ERCC6L2Q5T890 1561 aa25.05■■□□□ 1.6
SMARCD3-206ENST00000470588 FGD6Q6ZV73 1430 aa25.05■■□□□ 1.6
SMARCD3-206ENST00000470588 SETD5Q9C0A6 1442 aa25.03■■□□□ 1.6
SMARCD3-206ENST00000470588 OSCARQ8IYS5 282 aa25.02■■□□□ 1.6
SMARCD3-206ENST00000470588 UACAQ9BZF9 1416 aa25.01■■□□□ 1.59
SMARCD3-206ENST00000470588 ARHGEF11O15085 1522 aa25■■□□□ 1.59
SMARCD3-206ENST00000470588 MYOM3Q5VTT5 1437 aa24.99■■□□□ 1.59
SMARCD3-206ENST00000470588 RAB3GAP2Q9H2M9 1393 aa24.98■■□□□ 1.59
SMARCD3-206ENST00000470588 TROQ12816 1431 aaPredicted RBP24.96■■□□□ 1.59
SMARCD3-206ENST00000470588 ABCC2Q92887 1545 aa24.95■■□□□ 1.59
SMARCD3-206ENST00000470588 ATP10BO94823 1461 aa24.94■■□□□ 1.58
SMARCD3-206ENST00000470588 ADCY10Q96PN6 1610 aa24.93■■□□□ 1.58
SMARCD3-206ENST00000470588 PLEKHD1A6NEE1 506 aa24.89■■□□□ 1.57
SMARCD3-206ENST00000470588 PTPN23Q9H3S7 1636 aa24.88■■□□□ 1.57
SMARCD3-206ENST00000470588 UHRF1BP1LA0JNW5 1464 aa24.88■■□□□ 1.57
SMARCD3-206ENST00000470588 KIF14Q15058 1648 aa24.87■■□□□ 1.57
SMARCD3-206ENST00000470588 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
SMARCD3-206ENST00000470588 ITSN2Q9NZM3 1697 aa24.86■■□□□ 1.57
SMARCD3-206ENST00000470588 MIA2Q96PC5 1412 aa24.86■■□□□ 1.57
SMARCD3-206ENST00000470588 TCOF1Q13428 1488 aaKnown RBP24.84■■□□□ 1.57
SMARCD3-206ENST00000470588 ZCCHC11Q5TAX3 1644 aaKnown RBP24.79■■□□□ 1.56
SMARCD3-206ENST00000470588 PTPRKQ15262 1439 aa24.78■■□□□ 1.56
SMARCD3-206ENST00000470588 HFM1A2PYH4 1435 aa24.76■■□□□ 1.55
SMARCD3-206ENST00000470588 KDM5BQ9UGL1 1544 aa24.76■■□□□ 1.55
SMARCD3-206ENST00000470588 DIEXFQ68CQ4 756 aaKnown RBP24.75■■□□□ 1.55
SMARCD3-206ENST00000470588 MAPKBP1O60336 1514 aa24.73■■□□□ 1.55
SMARCD3-206ENST00000470588 ABCC10Q5T3U5 1492 aa24.71■■□□□ 1.55
SMARCD3-206ENST00000470588 CDC42BPAQ5VT25 1732 aa24.7■■□□□ 1.55
SMARCD3-206ENST00000470588 GPATCH8Q9UKJ3 1502 aaKnown RBP24.7■■□□□ 1.54
SMARCD3-206ENST00000470588 NAIPQ13075 1403 aa24.69■■□□□ 1.54
SMARCD3-206ENST00000470588 CFDP1Q9UEE9 299 aaPredicted RBP24.67■■□□□ 1.54
SMARCD3-206ENST00000470588 AKNAQ7Z591 1439 aa24.65■■□□□ 1.54
SMARCD3-206ENST00000470588 CAMSAP2Q08AD1 1489 aa24.64■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms