RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 NPM1P06748 294 aaKnown RBP eCLIP22.97■■□□□ 1.27
CPSF4-210ENST00000469897 CARMIL1Q5VZK9 1371 aa22.97■■□□□ 1.27
CPSF4-210ENST00000469897 KIAA0586Q9BVV6 1533 aa22.96■■□□□ 1.27
CPSF4-210ENST00000469897 RUSC2Q8N2Y8 1516 aa22.92■■□□□ 1.26
CPSF4-210ENST00000469897 TTBK1Q5TCY1 1321 aaPredicted RBP22.89■■□□□ 1.26
CPSF4-210ENST00000469897 FAM69CQ0P6D2 419 aa22.88■■□□□ 1.25
CPSF4-210ENST00000469897 CUL7Q14999 1698 aa22.84■■□□□ 1.25
CPSF4-210ENST00000469897 PTPRGP23470 1445 aa22.82■■□□□ 1.24
CPSF4-210ENST00000469897 AEBP2Q6ZN18 517 aaPredicted RBP22.8■■□□□ 1.24
CPSF4-210ENST00000469897 CARMIL2Q6F5E8 1435 aa22.75■■□□□ 1.23
CPSF4-210ENST00000469897 TNIKQ9UKE5 1360 aa22.75■■□□□ 1.23
CPSF4-210ENST00000469897 ABCC10Q5T3U5 1492 aa22.74■■□□□ 1.23
CPSF4-210ENST00000469897 ADCY10Q96PN6 1610 aa22.71■■□□□ 1.23
CPSF4-210ENST00000469897 RAPGEF2Q9Y4G8 1499 aa22.7■■□□□ 1.22
CPSF4-210ENST00000469897 MAPKBP1O60336 1514 aa22.68■■□□□ 1.22
CPSF4-210ENST00000469897 IQGAP2Q13576 1575 aa22.64■■□□□ 1.22
CPSF4-210ENST00000469897 KIF13AQ9H1H9 1805 aa22.63■■□□□ 1.21
CPSF4-210ENST00000469897 DISP1Q96F81 1524 aa22.62■■□□□ 1.21
CPSF4-210ENST00000469897 UACAQ9BZF9 1416 aa22.59■■□□□ 1.21
CPSF4-210ENST00000469897 DIP2BQ9P265 1576 aa22.59■■□□□ 1.21
CPSF4-210ENST00000469897 ABCC2Q92887 1545 aa22.58■■□□□ 1.21
CPSF4-210ENST00000469897 ASXL2Q76L83 1435 aa22.55■■□□□ 1.2
CPSF4-210ENST00000469897 UGGT2Q9NYU1 1516 aa22.54■■□□□ 1.2
CPSF4-210ENST00000469897 UHRF1BP1LA0JNW5 1464 aa22.54■■□□□ 1.2
CPSF4-210ENST00000469897 PLB1Q6P1J6 1458 aa22.51■■□□□ 1.19
CPSF4-210ENST00000469897 PRXQ9BXM0 1461 aa22.47■■□□□ 1.19
CPSF4-210ENST00000469897 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
CPSF4-210ENST00000469897 KDM5BQ9UGL1 1544 aa22.43■■□□□ 1.18
CPSF4-210ENST00000469897 P3H3Q8IVL6 736 aa22.43■■□□□ 1.18
CPSF4-210ENST00000469897 KIAA0556O60303 1618 aa22.42■■□□□ 1.18
CPSF4-210ENST00000469897 KDM6BO15054 1643 aa22.39■■□□□ 1.18
CPSF4-210ENST00000469897 GOLGA3Q08378 1498 aa22.39■■□□□ 1.17
CPSF4-210ENST00000469897 EPRSP07814 1512 aaKnown RBP22.38■■□□□ 1.17
CPSF4-210ENST00000469897 KDM4FA0A1W2PPD8 638 aa22.38■■□□□ 1.17
CPSF4-210ENST00000469897 KCNH8Q96L42 1107 aa22.38■■□□□ 1.17
CPSF4-210ENST00000469897 GLI2P10070 1586 aa22.37■■□□□ 1.17
CPSF4-210ENST00000469897 TSPOAP1O95153 1857 aa22.37■■□□□ 1.17
CPSF4-210ENST00000469897 FAM9AQ8IZU1 332 aaPredicted RBP22.36■■□□□ 1.17
CPSF4-210ENST00000469897 ARID3CA6NKF2 412 aa22.33■■□□□ 1.17
CPSF4-210ENST00000469897 RANGAP1P46060 587 aaPredicted RBP22.31■■□□□ 1.16
CPSF4-210ENST00000469897 ZCCHC11Q5TAX3 1644 aaKnown RBP22.3■■□□□ 1.16
CPSF4-210ENST00000469897 COL17A1Q9UMD9 1497 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-210ENST00000469897 WDR7Q9Y4E6 1490 aa22.28■■□□□ 1.16
CPSF4-210ENST00000469897 CTTNBP2Q8WZ74 1663 aa22.26■■□□□ 1.15
CPSF4-210ENST00000469897 ABCA8O94911 1581 aa22.25■■□□□ 1.15
CPSF4-210ENST00000469897 PPRC1Q5VV67 1664 aaKnown RBP22.23■■□□□ 1.15
CPSF4-210ENST00000469897 CD109Q6YHK3 1445 aa22.23■■□□□ 1.15
CPSF4-210ENST00000469897 TEX14Q8IWB6 1497 aa22.22■■□□□ 1.15
CPSF4-210ENST00000469897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.2■■□□□ 1.14
CPSF4-210ENST00000469897 HNRNPUL2Q1KMD3 747 aaKnown RBP22.2■■□□□ 1.14
CPSF4-210ENST00000469897 EEA1Q15075 1411 aa22.2■■□□□ 1.14
CPSF4-210ENST00000469897 MAP3K4Q9Y6R4 1608 aa22.2■■□□□ 1.14
CPSF4-210ENST00000469897 ATP10BO94823 1461 aa22.19■■□□□ 1.14
CPSF4-210ENST00000469897 EHMT2Q96KQ7 1210 aa22.15■■□□□ 1.14
CPSF4-210ENST00000469897 MAGI3Q5TCQ9 1506 aa22.13■■□□□ 1.13
CPSF4-210ENST00000469897 CHIC1Q5VXU3 224 aa22.1■■□□□ 1.13
CPSF4-210ENST00000469897 FHOD3Q2V2M9 1422 aa22.07■■□□□ 1.12
CPSF4-210ENST00000469897 SAMD9Q5K651 1589 aa22.07■■□□□ 1.12
CPSF4-210ENST00000469897 ADGRL1O94910 1474 aa22.06■■□□□ 1.12
CPSF4-210ENST00000469897 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
CPSF4-210ENST00000469897 PLEKHD1A6NEE1 506 aa22.04■■□□□ 1.12
CPSF4-210ENST00000469897 CFAP43Q8NDM7 1665 aa22.01■■□□□ 1.11
CPSF4-210ENST00000469897 RAPGEF3O95398 923 aa22■■□□□ 1.11
CPSF4-210ENST00000469897 NUP153P49790 1475 aaKnown RBP22■■□□□ 1.11
CPSF4-210ENST00000469897 RAPGEF6Q8TEU7 1601 aa21.98■■□□□ 1.11
CPSF4-210ENST00000469897 ATP1B4Q9UN42 357 aaPredicted RBP21.96■■□□□ 1.11
CPSF4-210ENST00000469897 PHLDB1Q86UU1 1377 aa21.96■■□□□ 1.11
CPSF4-210ENST00000469897 ARAP3Q8WWN8 1544 aa21.95■■□□□ 1.1
CPSF4-210ENST00000469897 KIF21BO75037 1637 aa21.92■■□□□ 1.1
CPSF4-210ENST00000469897 ABCA9Q8IUA7 1624 aa21.91■■□□□ 1.1
CPSF4-210ENST00000469897 EFCAB5A4FU69 1503 aa21.87■■□□□ 1.09
CPSF4-210ENST00000469897 NEO1Q92859 1461 aa21.87■■□□□ 1.09
CPSF4-210ENST00000469897 ARID4BQ4LE39 1312 aaPredicted RBP21.82■■□□□ 1.08
CPSF4-210ENST00000469897 AKNAQ7Z591 1439 aa21.8■■□□□ 1.08
CPSF4-210ENST00000469897 ARHGAP35Q9NRY4 1499 aa21.79■■□□□ 1.08
CPSF4-210ENST00000469897 CDK13Q14004 1512 aaKnown RBP21.79■■□□□ 1.08
CPSF4-210ENST00000469897 CDK11AQ9UQ88 783 aaPredicted RBP21.78■■□□□ 1.08
CPSF4-210ENST00000469897 FMN1Q68DA7 1419 aa21.78■■□□□ 1.08
CPSF4-210ENST00000469897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.77■■□□□ 1.08
CPSF4-210ENST00000469897 FANCAO15360 1455 aa21.77■■□□□ 1.07
CPSF4-210ENST00000469897 DENND4BO75064 1496 aaPredicted RBP21.77■■□□□ 1.07
CPSF4-210ENST00000469897 PLCH2O75038 1416 aa21.72■■□□□ 1.07
CPSF4-210ENST00000469897 EFCAB2Q5VUJ9 269 aa21.71■■□□□ 1.07
CPSF4-210ENST00000469897 FRMPD1Q5SYB0 1578 aa21.69■■□□□ 1.06
CPSF4-210ENST00000469897 HECW2Q9P2P5 1572 aa21.69■■□□□ 1.06
CPSF4-210ENST00000469897 SCAPERQ9BY12 1400 aa21.68■■□□□ 1.06
CPSF4-210ENST00000469897 TTC37Q6PGP7 1564 aa21.67■■□□□ 1.06
CPSF4-210ENST00000469897 PTPRMP28827 1452 aa21.66■■□□□ 1.06
CPSF4-210ENST00000469897 ILDR1Q86SU0 546 aaPredicted RBP21.66■■□□□ 1.06
CPSF4-210ENST00000469897 HECW1Q76N89 1606 aa21.63■■□□□ 1.05
CPSF4-210ENST00000469897 MLECQ14165 292 aa21.63■■□□□ 1.05
CPSF4-210ENST00000469897 PLPPR3Q6T4P5 718 aa21.63■■□□□ 1.05
CPSF4-210ENST00000469897 YEATS2Q9ULM3 1422 aa21.63■■□□□ 1.05
CPSF4-210ENST00000469897 TROQ12816 1431 aaPredicted RBP21.61■■□□□ 1.05
CPSF4-210ENST00000469897 AFAP1Q8N556 730 aa21.6■■□□□ 1.05
CPSF4-210ENST00000469897 ADAMTSL3P82987 1691 aa21.59■■□□□ 1.05
CPSF4-210ENST00000469897 CFAP74Q9C0B2 1584 aa21.58■■□□□ 1.05
CPSF4-210ENST00000469897 CLIP1P30622 1438 aa21.58■■□□□ 1.05
CPSF4-210ENST00000469897 MYT1LQ9UL68 1186 aa21.57■■□□□ 1.04
CPSF4-210ENST00000469897 MAGI2Q86UL8 1455 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms