RNA–Protein interactions for RNA: ENST00000468117.1

TMEM53-207, Transcript of transmembrane protein 53, humanhuman

TSL 3

Gene TMEM53, Length 2,017 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-207ENST00000468117 VPS8Q8N3P4 1428 aa32.35■■■□□ 2.77
TMEM53-207ENST00000468117 PPARGC1BQ86YN6 1023 aaKnown RBP32.27■■■□□ 2.76
TMEM53-207ENST00000468117 GRIN2AQ12879 1464 aa32.26■■■□□ 2.75
TMEM53-207ENST00000468117 SYNJ2O15056 1496 aa32.25■■■□□ 2.75
TMEM53-207ENST00000468117 CHMP7Q8WUX9 453 aaPredicted RBP32.2■■■□□ 2.75
TMEM53-207ENST00000468117 EFCAB5A4FU69 1503 aa32.18■■■□□ 2.74
TMEM53-207ENST00000468117 FBLN2P98095 1184 aa32.17■■■□□ 2.74
TMEM53-207ENST00000468117 IQGAP2Q13576 1575 aa32.17■■■□□ 2.74
TMEM53-207ENST00000468117 P3H3Q8IVL6 736 aa32.16■■■□□ 2.74
TMEM53-207ENST00000468117 PCGF6Q9BYE7 350 aa32.15■■■□□ 2.74
TMEM53-207ENST00000468117 TRIM26Q12899 539 aaPredicted RBP32.11■■■□□ 2.73
TMEM53-207ENST00000468117 SAMD9Q5K651 1589 aa32.11■■■□□ 2.73
TMEM53-207ENST00000468117 FHOD3Q2V2M9 1422 aa32.1■■■□□ 2.73
TMEM53-207ENST00000468117 CEP170Q5SW79 1584 aa32.09■■■□□ 2.73
TMEM53-207ENST00000468117 KIAA0586Q9BVV6 1533 aa32.07■■■□□ 2.72
TMEM53-207ENST00000468117 TTBK1Q5TCY1 1321 aaPredicted RBP32.05■■■□□ 2.72
TMEM53-207ENST00000468117 APLP2Q06481 763 aa32.03■■■□□ 2.72
TMEM53-207ENST00000468117 CHD1O14646 1710 aa32.01■■■□□ 2.72
TMEM53-207ENST00000468117 NUP160Q12769 1436 aa32■■■□□ 2.71
TMEM53-207ENST00000468117 UGGT2Q9NYU1 1516 aa31.97■■■□□ 2.71
TMEM53-207ENST00000468117 PCF11O94913 1555 aaKnown RBP31.94■■■□□ 2.7
TMEM53-207ENST00000468117 FMN1Q68DA7 1419 aa31.9■■■□□ 2.7
TMEM53-207ENST00000468117 DISP1Q96F81 1524 aa31.85■■■□□ 2.69
TMEM53-207ENST00000468117 KIAA0556O60303 1618 aa31.84■■■□□ 2.69
TMEM53-207ENST00000468117 CASKIN1Q8WXD9 1431 aa31.83■■■□□ 2.69
TMEM53-207ENST00000468117 FYCO1Q9BQS8 1478 aa31.83■■■□□ 2.69
TMEM53-207ENST00000468117 ATP1B4Q9UN42 357 aaPredicted RBP31.8■■■□□ 2.68
TMEM53-207ENST00000468117 KANK4Q5T7N3 995 aaPredicted RBP31.8■■■□□ 2.68
TMEM53-207ENST00000468117 TIAM1Q13009 1591 aa31.8■■■□□ 2.68
TMEM53-207ENST00000468117 JPH4Q96JJ6 628 aa31.78■■■□□ 2.68
TMEM53-207ENST00000468117 MAP3K1Q13233 1512 aa31.76■■■□□ 2.67
TMEM53-207ENST00000468117 CFAP43Q8NDM7 1665 aa31.74■■■□□ 2.67
TMEM53-207ENST00000468117 LRRIQ1Q96JM4 1722 aa31.71■■■□□ 2.67
TMEM53-207ENST00000468117 CARMIL2Q6F5E8 1435 aa31.67■■■□□ 2.66
TMEM53-207ENST00000468117 LRRC9Q6ZRR7 1453 aa31.63■■■□□ 2.65
TMEM53-207ENST00000468117 HECW1Q76N89 1606 aa31.6■■■□□ 2.65
TMEM53-207ENST00000468117 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
TMEM53-207ENST00000468117 PRG4Q92954 1404 aaPredicted RBP31.59■■■□□ 2.65
TMEM53-207ENST00000468117 CLASP1Q7Z460 1538 aa31.56■■■□□ 2.64
TMEM53-207ENST00000468117 RAPGEF6Q8TEU7 1601 aa31.53■■■□□ 2.64
TMEM53-207ENST00000468117 CCDC18Q5T9S5 1454 aa31.5■■■□□ 2.63
TMEM53-207ENST00000468117 EPRSP07814 1512 aaKnown RBP31.5■■■□□ 2.63
TMEM53-207ENST00000468117 PLB1Q6P1J6 1458 aa31.46■■■□□ 2.63
TMEM53-207ENST00000468117 CDK13Q14004 1512 aaKnown RBP31.45■■■□□ 2.63
TMEM53-207ENST00000468117 NUP153P49790 1475 aaKnown RBP31.45■■■□□ 2.62
TMEM53-207ENST00000468117 ARID3CA6NKF2 412 aa31.44■■■□□ 2.62
TMEM53-207ENST00000468117 ERCC6L2Q5T890 1561 aa31.44■■■□□ 2.62
TMEM53-207ENST00000468117 MTUS2Q5JR59 1369 aa31.43■■■□□ 2.62
TMEM53-207ENST00000468117 MAGI3Q5TCQ9 1506 aa31.39■■■□□ 2.62
TMEM53-207ENST00000468117 PTPRGP23470 1445 aa31.37■■■□□ 2.61
TMEM53-207ENST00000468117 ABCA8O94911 1581 aa31.37■■■□□ 2.61
TMEM53-207ENST00000468117 EHBP1L1Q8N3D4 1523 aa31.36■■■□□ 2.61
TMEM53-207ENST00000468117 RRBP1Q9P2E9 1410 aaKnown RBP31.36■■■□□ 2.61
TMEM53-207ENST00000468117 PHLDB1Q86UU1 1377 aa31.36■■■□□ 2.61
TMEM53-207ENST00000468117 SUPT6HQ7KZ85 1726 aaKnown RBP31.31■■■□□ 2.6
TMEM53-207ENST00000468117 OSCARQ8IYS5 282 aa31.29■■■□□ 2.6
TMEM53-207ENST00000468117 CCNB3Q8WWL7 1395 aa31.28■■■□□ 2.6
TMEM53-207ENST00000468117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.27■■■□□ 2.6
TMEM53-207ENST00000468117 HNRNPUL2Q1KMD3 747 aaKnown RBP31.27■■■□□ 2.6
TMEM53-207ENST00000468117 NCOA2Q15596 1464 aa31.26■■■□□ 2.59
TMEM53-207ENST00000468117 UACAQ9BZF9 1416 aa31.19■■■□□ 2.58
TMEM53-207ENST00000468117 ARHGEF11O15085 1522 aa31.18■■■□□ 2.58
TMEM53-207ENST00000468117 CDK11AQ9UQ88 783 aaPredicted RBP31.18■■■□□ 2.58
TMEM53-207ENST00000468117 ATP10BO94823 1461 aa31.17■■■□□ 2.58
TMEM53-207ENST00000468117 MYOM3Q5VTT5 1437 aa31.12■■■□□ 2.57
TMEM53-207ENST00000468117 FGD6Q6ZV73 1430 aa31.12■■■□□ 2.57
TMEM53-207ENST00000468117 ABCC2Q92887 1545 aa31.11■■■□□ 2.57
TMEM53-207ENST00000468117 TROQ12816 1431 aaPredicted RBP31.1■■■□□ 2.57
TMEM53-207ENST00000468117 FAM50AQ14320 339 aaKnown RBP31.1■■■□□ 2.57
TMEM53-207ENST00000468117 HRCP23327 699 aa31.09■■■□□ 2.57
TMEM53-207ENST00000468117 ITGAEP38570 1179 aa31.07■■■□□ 2.56
TMEM53-207ENST00000468117 KIF14Q15058 1648 aa31.03■■■□□ 2.56
TMEM53-207ENST00000468117 ADCY10Q96PN6 1610 aa31.03■■■□□ 2.56
TMEM53-207ENST00000468117 PLEKHD1A6NEE1 506 aa31.02■■■□□ 2.56
TMEM53-207ENST00000468117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31■■■□□ 2.55
TMEM53-207ENST00000468117 PTPN23Q9H3S7 1636 aa30.99■■■□□ 2.55
TMEM53-207ENST00000468117 UHRF1BP1LA0JNW5 1464 aa30.99■■■□□ 2.55
TMEM53-207ENST00000468117 ZCCHC11Q5TAX3 1644 aaKnown RBP30.94■■■□□ 2.54
TMEM53-207ENST00000468117 MIA2Q96PC5 1412 aa30.92■■■□□ 2.54
TMEM53-207ENST00000468117 KDM5BQ9UGL1 1544 aa30.9■■■□□ 2.54
TMEM53-207ENST00000468117 TCOF1Q13428 1488 aaKnown RBP30.89■■■□□ 2.53
TMEM53-207ENST00000468117 ITSN2Q9NZM3 1697 aa30.88■■■□□ 2.53
TMEM53-207ENST00000468117 CCER1Q8TC90 406 aaPredicted RBP30.88■■■□□ 2.53
TMEM53-207ENST00000468117 ABCC10Q5T3U5 1492 aa30.85■■■□□ 2.53
TMEM53-207ENST00000468117 GPATCH8Q9UKJ3 1502 aaKnown RBP30.85■■■□□ 2.53
TMEM53-207ENST00000468117 CDC42BPAQ5VT25 1732 aa30.84■■■□□ 2.53
TMEM53-207ENST00000468117 PTPRKQ15262 1439 aa30.79■■■□□ 2.52
TMEM53-207ENST00000468117 CFDP1Q9UEE9 299 aaPredicted RBP30.77■■■□□ 2.52
TMEM53-207ENST00000468117 ZNF644Q9H582 1327 aaPredicted RBP30.76■■■□□ 2.51
TMEM53-207ENST00000468117 TTC37Q6PGP7 1564 aa30.72■■■□□ 2.51
TMEM53-207ENST00000468117 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.72■■■□□ 2.51
TMEM53-207ENST00000468117 ZEB1P37275 1124 aaPredicted RBP30.71■■■□□ 2.51
TMEM53-207ENST00000468117 KCNH8Q96L42 1107 aa30.71■■■□□ 2.51
TMEM53-207ENST00000468117 CAMSAP2Q08AD1 1489 aa30.71■■■□□ 2.51
TMEM53-207ENST00000468117 SETD5Q9C0A6 1442 aa30.71■■■□□ 2.51
TMEM53-207ENST00000468117 RAB3GAP2Q9H2M9 1393 aa30.7■■■□□ 2.51
TMEM53-207ENST00000468117 ZNF777Q9ULD5 760 aaPredicted RBP30.69■■■□□ 2.5
TMEM53-207ENST00000468117 CDC42BPBQ9Y5S2 1711 aa30.69■■■□□ 2.5
TMEM53-207ENST00000468117 PREX2Q70Z35 1606 aa30.67■■■□□ 2.5
TMEM53-207ENST00000468117 DNMT1P26358 1616 aaKnown RBP30.67■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms