RNA–Protein interactions for RNA: ENST00000466351.1

CDHR3-204, Transcript of cadherin related family member 3, humanhuman

TSL 3

Gene CDHR3, Length 362 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-204ENST00000466351 ABCA5Q8WWZ7 1642 aa10.32□□□□□ -0.76
CDHR3-204ENST00000466351 THOC2Q8NI27 1593 aaKnown RBP10.31□□□□□ -0.76
CDHR3-204ENST00000466351 POLA1P09884 1462 aaPredicted RBP10.3□□□□□ -0.76
CDHR3-204ENST00000466351 CARMIL1Q5VZK9 1371 aa10.3□□□□□ -0.76
CDHR3-204ENST00000466351 FYCO1Q9BQS8 1478 aa10.3□□□□□ -0.76
CDHR3-204ENST00000466351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.28□□□□□ -0.76
CDHR3-204ENST00000466351 MAPK8IP2Q13387 824 aaPredicted RBP10.26□□□□□ -0.77
CDHR3-204ENST00000466351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.26□□□□□ -0.77
CDHR3-204ENST00000466351 PDS5BQ9NTI5 1447 aa10.25□□□□□ -0.77
CDHR3-204ENST00000466351 SAMD9Q5K651 1589 aa10.25□□□□□ -0.77
CDHR3-204ENST00000466351 PCF11O94913 1555 aaKnown RBP10.24□□□□□ -0.77
CDHR3-204ENST00000466351 CCNB3Q8WWL7 1395 aa10.23□□□□□ -0.77
CDHR3-204ENST00000466351 LRRC9Q6ZRR7 1453 aa10.23□□□□□ -0.77
CDHR3-204ENST00000466351 FMN1Q68DA7 1419 aa10.22□□□□□ -0.77
CDHR3-204ENST00000466351 CASKIN1Q8WXD9 1431 aa10.22□□□□□ -0.77
CDHR3-204ENST00000466351 URB2Q14146 1524 aaKnown RBP10.22□□□□□ -0.77
CDHR3-204ENST00000466351 TARBP1Q13395 1621 aaKnown RBP10.21□□□□□ -0.78
CDHR3-204ENST00000466351 PBRM1Q86U86 1689 aa10.19□□□□□ -0.78
CDHR3-204ENST00000466351 SCAF1Q9H7N4 1312 aaKnown RBP10.19□□□□□ -0.78
CDHR3-204ENST00000466351 DHX57Q6P158 1386 aaKnown RBP10.17□□□□□ -0.78
CDHR3-204ENST00000466351 ZNF316A6NFI3 1004 aaPredicted RBP10.17□□□□□ -0.78
CDHR3-204ENST00000466351 PPP4R3CPQ6ZMV5 832 aa10.17□□□□□ -0.78
CDHR3-204ENST00000466351 GAPVD1Q14C86 1478 aa10.17□□□□□ -0.78
CDHR3-204ENST00000466351 SNAPC4Q5SXM2 1469 aa10.17□□□□□ -0.78
CDHR3-204ENST00000466351 NESP48681 1621 aa10.16□□□□□ -0.78
CDHR3-204ENST00000466351 DIEXFQ68CQ4 756 aaKnown RBP10.15□□□□□ -0.78
CDHR3-204ENST00000466351 RAD54L2Q9Y4B4 1467 aa10.15□□□□□ -0.78
CDHR3-204ENST00000466351 EHBP1L1Q8N3D4 1523 aa10.14□□□□□ -0.79
CDHR3-204ENST00000466351 ADAMTS12P58397 1594 aa10.14□□□□□ -0.79
CDHR3-204ENST00000466351 CCDC18Q5T9S5 1454 aa10.13□□□□□ -0.79
CDHR3-204ENST00000466351 SUPT6HQ7KZ85 1726 aaKnown RBP10.13□□□□□ -0.79
CDHR3-204ENST00000466351 KANK4Q5T7N3 995 aaPredicted RBP10.12□□□□□ -0.79
CDHR3-204ENST00000466351 HECW1Q76N89 1606 aa10.11□□□□□ -0.79
CDHR3-204ENST00000466351 MRC2Q9UBG0 1479 aa10.11□□□□□ -0.79
CDHR3-204ENST00000466351 CENPBP07199 599 aaPredicted RBP10.11□□□□□ -0.79
CDHR3-204ENST00000466351 GRIN2BQ13224 1484 aa10.1□□□□□ -0.79
CDHR3-204ENST00000466351 IQGAP2Q13576 1575 aa10.1□□□□□ -0.79
CDHR3-204ENST00000466351 HNRNPUL2Q1KMD3 747 aaKnown RBP10.1□□□□□ -0.79
CDHR3-204ENST00000466351 DMRT2Q9Y5R5 561 aa10.1□□□□□ -0.79
CDHR3-204ENST00000466351 WDR62O43379 1518 aa10.1□□□□□ -0.79
CDHR3-204ENST00000466351 LRRIQ1Q96JM4 1722 aa10.1□□□□□ -0.79
CDHR3-204ENST00000466351 ARHGEF11O15085 1522 aa10.09□□□□□ -0.79
CDHR3-204ENST00000466351 TIMELESSQ9UNS1 1208 aa10.09□□□□□ -0.79
CDHR3-204ENST00000466351 TTBK1Q5TCY1 1321 aaPredicted RBP10.08□□□□□ -0.8
CDHR3-204ENST00000466351 SETD5Q9C0A6 1442 aa10.08□□□□□ -0.8
CDHR3-204ENST00000466351 ACIN1Q9UKV3 1341 aaKnown RBP10.07□□□□□ -0.8
CDHR3-204ENST00000466351 FHOD3Q2V2M9 1422 aa10.07□□□□□ -0.8
CDHR3-204ENST00000466351 AKNAQ7Z591 1439 aa10.07□□□□□ -0.8
CDHR3-204ENST00000466351 MAPKBP1O60336 1514 aa10.07□□□□□ -0.8
CDHR3-204ENST00000466351 UGGT2Q9NYU1 1516 aa10.07□□□□□ -0.8
CDHR3-204ENST00000466351 IFT140Q96RY7 1462 aa10.07□□□□□ -0.8
CDHR3-204ENST00000466351 GCC2Q8IWJ2 1684 aa10.06□□□□□ -0.8
CDHR3-204ENST00000466351 PHLDB1Q86UU1 1377 aa10.06□□□□□ -0.8
CDHR3-204ENST00000466351 FGD6Q6ZV73 1430 aa10.06□□□□□ -0.8
CDHR3-204ENST00000466351 PELP1Q8IZL8 1130 aaKnown RBP10.05□□□□□ -0.8
CDHR3-204ENST00000466351 RAB3GAP2Q9H2M9 1393 aa10.04□□□□□ -0.8
CDHR3-204ENST00000466351 TCOF1Q13428 1488 aaKnown RBP10.04□□□□□ -0.8
CDHR3-204ENST00000466351 HFM1A2PYH4 1435 aa10.03□□□□□ -0.8
CDHR3-204ENST00000466351 MYOM3Q5VTT5 1437 aa10.03□□□□□ -0.8
CDHR3-204ENST00000466351 PTPN23Q9H3S7 1636 aa10.01□□□□□ -0.81
CDHR3-204ENST00000466351 MIA2Q96PC5 1412 aa10□□□□□ -0.81
CDHR3-204ENST00000466351 RANGAP1P46060 587 aaPredicted RBP10□□□□□ -0.81
CDHR3-204ENST00000466351 MTUS2Q5JR59 1369 aa10□□□□□ -0.81
CDHR3-204ENST00000466351 NCOA2Q15596 1464 aa9.99□□□□□ -0.81
CDHR3-204ENST00000466351 MAGI1Q96QZ7 1491 aaPredicted RBP9.99□□□□□ -0.81
CDHR3-204ENST00000466351 KIAA0586Q9BVV6 1533 aa9.99□□□□□ -0.81
CDHR3-204ENST00000466351 KIAA0556O60303 1618 aa9.99□□□□□ -0.81
CDHR3-204ENST00000466351 UACAQ9BZF9 1416 aa9.99□□□□□ -0.81
CDHR3-204ENST00000466351 TDRD9Q8NDG6 1382 aaKnown RBP9.98□□□□□ -0.81
CDHR3-204ENST00000466351 EIF4G3O43432 1585 aaKnown RBP9.97□□□□□ -0.81
CDHR3-204ENST00000466351 EPRSP07814 1512 aaKnown RBP9.96□□□□□ -0.82
CDHR3-204ENST00000466351 ADCY10Q96PN6 1610 aa9.96□□□□□ -0.82
CDHR3-204ENST00000466351 ITSN2Q9NZM3 1697 aa9.96□□□□□ -0.82
CDHR3-204ENST00000466351 RAPGEF6Q8TEU7 1601 aa9.94□□□□□ -0.82
CDHR3-204ENST00000466351 GRIN2AQ12879 1464 aa9.93□□□□□ -0.82
CDHR3-204ENST00000466351 DNMT1P26358 1616 aaKnown RBP9.93□□□□□ -0.82
CDHR3-204ENST00000466351 MAGI3Q5TCQ9 1506 aa9.92□□□□□ -0.82
CDHR3-204ENST00000466351 NAIPQ13075 1403 aa9.91□□□□□ -0.82
CDHR3-204ENST00000466351 CNKSR2Q8WXI2 1034 aa9.91□□□□□ -0.82
CDHR3-204ENST00000466351 DISP1Q96F81 1524 aa9.91□□□□□ -0.82
CDHR3-204ENST00000466351 ROCK1Q13464 1354 aa9.9□□□□□ -0.82
CDHR3-204ENST00000466351 ADGBQ8N7X0 1667 aa9.9□□□□□ -0.82
CDHR3-204ENST00000466351 NEUROD1Q13562 356 aa9.9□□□□□ -0.82
CDHR3-204ENST00000466351 SYNJ2O15056 1496 aa9.9□□□□□ -0.83
CDHR3-204ENST00000466351 CROCC2H7BZ55 1655 aa9.89□□□□□ -0.83
CDHR3-204ENST00000466351 FAM50AQ14320 339 aaKnown RBP9.87□□□□□ -0.83
CDHR3-204ENST00000466351 NUP160Q12769 1436 aa9.87□□□□□ -0.83
CDHR3-204ENST00000466351 POLR1AO95602 1720 aaPredicted RBP9.87□□□□□ -0.83
CDHR3-204ENST00000466351 NUP153P49790 1475 aaKnown RBP9.85□□□□□ -0.83
CDHR3-204ENST00000466351 PTPRKQ15262 1439 aa9.85□□□□□ -0.83
CDHR3-204ENST00000466351 MIER1Q8N108 512 aa9.85□□□□□ -0.83
CDHR3-204ENST00000466351 ZNF608Q9ULD9 1512 aaPredicted RBP9.85□□□□□ -0.83
CDHR3-204ENST00000466351 CEP170Q5SW79 1584 aa9.84□□□□□ -0.83
CDHR3-204ENST00000466351 ADGRL2O95490 1459 aa9.84□□□□□ -0.83
CDHR3-204ENST00000466351 CDK13Q14004 1512 aaKnown RBP9.83□□□□□ -0.84
CDHR3-204ENST00000466351 P3H3Q8IVL6 736 aa9.83□□□□□ -0.84
CDHR3-204ENST00000466351 TROQ12816 1431 aaPredicted RBP9.82□□□□□ -0.84
CDHR3-204ENST00000466351 CARMIL2Q6F5E8 1435 aa9.82□□□□□ -0.84
CDHR3-204ENST00000466351 KDM5BQ9UGL1 1544 aa9.82□□□□□ -0.84
CDHR3-204ENST00000466351 SHANK2Q9UPX8 1470 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms