RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IGF1RP08069 1367 aa19.83■□□□□ 0.76
USP54-209ENST00000464635 PRG4Q92954 1404 aaPredicted RBP19.82■□□□□ 0.76
USP54-209ENST00000464635 JPH4Q96JJ6 628 aa19.76■□□□□ 0.75
USP54-209ENST00000464635 KIAA0586Q9BVV6 1533 aa19.73■□□□□ 0.75
USP54-209ENST00000464635 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
USP54-209ENST00000464635 KIF13AQ9H1H9 1805 aa19.67■□□□□ 0.74
USP54-209ENST00000464635 ADCY10Q96PN6 1610 aa19.65■□□□□ 0.74
USP54-209ENST00000464635 IQGAP2Q13576 1575 aa19.62■□□□□ 0.73
USP54-209ENST00000464635 RAPGEF2Q9Y4G8 1499 aa19.56■□□□□ 0.72
USP54-209ENST00000464635 MAPKBP1O60336 1514 aa19.55■□□□□ 0.72
USP54-209ENST00000464635 CTTNBP2Q8WZ74 1663 aa19.52■□□□□ 0.72
USP54-209ENST00000464635 DIP2BQ9P265 1576 aa19.52■□□□□ 0.71
USP54-209ENST00000464635 DISP1Q96F81 1524 aa19.51■□□□□ 0.71
USP54-209ENST00000464635 PTPRGP23470 1445 aa19.5■□□□□ 0.71
USP54-209ENST00000464635 CARMIL2Q6F5E8 1435 aa19.5■□□□□ 0.71
USP54-209ENST00000464635 TTBK1Q5TCY1 1321 aaPredicted RBP19.49■□□□□ 0.71
USP54-209ENST00000464635 ABCC10Q5T3U5 1492 aa19.48■□□□□ 0.71
USP54-209ENST00000464635 UGGT2Q9NYU1 1516 aa19.48■□□□□ 0.71
USP54-209ENST00000464635 TNIKQ9UKE5 1360 aa19.47■□□□□ 0.71
USP54-209ENST00000464635 KIAA0556O60303 1618 aa19.46■□□□□ 0.71
USP54-209ENST00000464635 NPM1P06748 294 aaKnown RBP eCLIP19.45■□□□□ 0.7
USP54-209ENST00000464635 ABCC2Q92887 1545 aa19.42■□□□□ 0.7
USP54-209ENST00000464635 PRXQ9BXM0 1461 aa19.41■□□□□ 0.7
USP54-209ENST00000464635 TSPOAP1O95153 1857 aa19.41■□□□□ 0.7
USP54-209ENST00000464635 FAM69CQ0P6D2 419 aa19.41■□□□□ 0.7
USP54-209ENST00000464635 UHRF1BP1LA0JNW5 1464 aa19.39■□□□□ 0.69
USP54-209ENST00000464635 UACAQ9BZF9 1416 aa19.37■□□□□ 0.69
USP54-209ENST00000464635 ZCCHC11Q5TAX3 1644 aaKnown RBP19.35■□□□□ 0.69
USP54-209ENST00000464635 ASXL2Q76L83 1435 aa19.33■□□□□ 0.68
USP54-209ENST00000464635 KDM5BQ9UGL1 1544 aa19.31■□□□□ 0.68
USP54-209ENST00000464635 PPRC1Q5VV67 1664 aaKnown RBP19.31■□□□□ 0.68
USP54-209ENST00000464635 KDM6BO15054 1643 aa19.29■□□□□ 0.68
USP54-209ENST00000464635 PLB1Q6P1J6 1458 aa19.28■□□□□ 0.68
USP54-209ENST00000464635 GLI2P10070 1586 aa19.28■□□□□ 0.68
USP54-209ENST00000464635 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
USP54-209ENST00000464635 ABCA8O94911 1581 aa19.27■□□□□ 0.67
USP54-209ENST00000464635 EEA1Q15075 1411 aa19.26■□□□□ 0.67
USP54-209ENST00000464635 MAP3K4Q9Y6R4 1608 aa19.23■□□□□ 0.67
USP54-209ENST00000464635 EPRSP07814 1512 aaKnown RBP19.23■□□□□ 0.67
USP54-209ENST00000464635 CSRNP3Q8WYN3 585 aa19.22■□□□□ 0.67
USP54-209ENST00000464635 SAMD9Q5K651 1589 aa19.2■□□□□ 0.66
USP54-209ENST00000464635 WDR7Q9Y4E6 1490 aa19.17■□□□□ 0.66
USP54-209ENST00000464635 AEBP2Q6ZN18 517 aaPredicted RBP19.15■□□□□ 0.66
USP54-209ENST00000464635 P3H3Q8IVL6 736 aa19.14■□□□□ 0.65
USP54-209ENST00000464635 FAM9AQ8IZU1 332 aaPredicted RBP19.14■□□□□ 0.65
USP54-209ENST00000464635 KIF21BO75037 1637 aa19.14■□□□□ 0.65
USP54-209ENST00000464635 CFAP43Q8NDM7 1665 aa19.1■□□□□ 0.65
USP54-209ENST00000464635 RAPGEF6Q8TEU7 1601 aa19.1■□□□□ 0.65
USP54-209ENST00000464635 COL17A1Q9UMD9 1497 aaPredicted RBP19.09■□□□□ 0.65
USP54-209ENST00000464635 ARID3CA6NKF2 412 aa19.07■□□□□ 0.64
USP54-209ENST00000464635 TEX14Q8IWB6 1497 aa19.07■□□□□ 0.64
USP54-209ENST00000464635 ATP10BO94823 1461 aa19.06■□□□□ 0.64
USP54-209ENST00000464635 FHOD3Q2V2M9 1422 aa19.05■□□□□ 0.64
USP54-209ENST00000464635 RANGAP1P46060 587 aaPredicted RBP19.04■□□□□ 0.64
USP54-209ENST00000464635 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
USP54-209ENST00000464635 CD109Q6YHK3 1445 aa19■□□□□ 0.63
USP54-209ENST00000464635 MAGI3Q5TCQ9 1506 aa19■□□□□ 0.63
USP54-209ENST00000464635 NUP153P49790 1475 aaKnown RBP19■□□□□ 0.63
USP54-209ENST00000464635 EFCAB5A4FU69 1503 aa19■□□□□ 0.63
USP54-209ENST00000464635 ABCA9Q8IUA7 1624 aa18.98■□□□□ 0.63
USP54-209ENST00000464635 KDM4FA0A1W2PPD8 638 aa18.96■□□□□ 0.63
USP54-209ENST00000464635 EHMT2Q96KQ7 1210 aa18.96■□□□□ 0.63
USP54-209ENST00000464635 LOC105371045A0A1W2PR82 267 aa18.93■□□□□ 0.62
USP54-209ENST00000464635 ADGRL1O94910 1474 aa18.9■□□□□ 0.62
USP54-209ENST00000464635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.87■□□□□ 0.61
USP54-209ENST00000464635 CDK13Q14004 1512 aaKnown RBP18.87■□□□□ 0.61
USP54-209ENST00000464635 HNRNPUL2Q1KMD3 747 aaKnown RBP18.87■□□□□ 0.61
USP54-209ENST00000464635 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
USP54-209ENST00000464635 UBTFP17480 764 aaKnown RBP18.86■□□□□ 0.61
USP54-209ENST00000464635 ARAP3Q8WWN8 1544 aa18.85■□□□□ 0.61
USP54-209ENST00000464635 TTC37Q6PGP7 1564 aa18.83■□□□□ 0.6
USP54-209ENST00000464635 FRMPD1Q5SYB0 1578 aa18.81■□□□□ 0.6
USP54-209ENST00000464635 LRRIQ1Q96JM4 1722 aa18.81■□□□□ 0.6
USP54-209ENST00000464635 HECW1Q76N89 1606 aa18.81■□□□□ 0.6
USP54-209ENST00000464635 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.8■□□□□ 0.6
USP54-209ENST00000464635 NEO1Q92859 1461 aa18.79■□□□□ 0.6
USP54-209ENST00000464635 FMN1Q68DA7 1419 aa18.76■□□□□ 0.59
USP54-209ENST00000464635 RICTORQ6R327 1708 aa18.75■□□□□ 0.59
USP54-209ENST00000464635 PLEKHD1A6NEE1 506 aa18.75■□□□□ 0.59
USP54-209ENST00000464635 CFAP74Q9C0B2 1584 aa18.74■□□□□ 0.59
USP54-209ENST00000464635 PHLDB1Q86UU1 1377 aa18.74■□□□□ 0.59
USP54-209ENST00000464635 KIF14Q15058 1648 aa18.72■□□□□ 0.59
USP54-209ENST00000464635 RAPGEF3O95398 923 aa18.72■□□□□ 0.59
USP54-209ENST00000464635 PCF11O94913 1555 aaKnown RBP18.72■□□□□ 0.59
USP54-209ENST00000464635 FANCAO15360 1455 aa18.71■□□□□ 0.59
USP54-209ENST00000464635 ATP1B4Q9UN42 357 aaPredicted RBP18.7■□□□□ 0.58
USP54-209ENST00000464635 MYO5CQ9NQX4 1742 aa18.69■□□□□ 0.58
USP54-209ENST00000464635 AKNAQ7Z591 1439 aa18.68■□□□□ 0.58
USP54-209ENST00000464635 ARHGEF40Q8TER5 1519 aa18.68■□□□□ 0.58
USP54-209ENST00000464635 DENND4BO75064 1496 aaPredicted RBP18.66■□□□□ 0.58
USP54-209ENST00000464635 ADAMTSL3P82987 1691 aa18.66■□□□□ 0.58
USP54-209ENST00000464635 ZMYM4Q5VZL5 1548 aa18.64■□□□□ 0.57
USP54-209ENST00000464635 BCORL1Q5H9F3 1711 aa18.63■□□□□ 0.57
USP54-209ENST00000464635 SIGLEC1Q9BZZ2 1709 aa18.63■□□□□ 0.57
USP54-209ENST00000464635 TROQ12816 1431 aaPredicted RBP18.63■□□□□ 0.57
USP54-209ENST00000464635 HECW2Q9P2P5 1572 aa18.63■□□□□ 0.57
USP54-209ENST00000464635 PLCH2O75038 1416 aa18.62■□□□□ 0.57
USP54-209ENST00000464635 CASKIN1Q8WXD9 1431 aa18.61■□□□□ 0.57
USP54-209ENST00000464635 MADDQ8WXG6 1647 aa18.6■□□□□ 0.57
USP54-209ENST00000464635 CEP162Q5TB80 1403 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms