RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 CCDC136Q96JN2 1154 aa12.37□□□□□ -0.43
HPS4-208ENST00000464362 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.37□□□□□ -0.436e-6■□□□□ 8.2
HPS4-208ENST00000464362 BAZ1AQ9NRL2 1556 aaPredicted RBP12.35□□□□□ -0.43
HPS4-208ENST00000464362 EIF4G2P78344 907 aaKnown RBP eCLIP12.35□□□□□ -0.43
HPS4-208ENST00000464362 RUSC2Q8N2Y8 1516 aa12.35□□□□□ -0.43
HPS4-208ENST00000464362 KCNH8Q96L42 1107 aa12.35□□□□□ -0.43
HPS4-208ENST00000464362 BAZ1BQ9UIG0 1483 aaKnown RBP12.34□□□□□ -0.43
HPS4-208ENST00000464362 WIZO95785 1651 aa12.33□□□□□ -0.44
HPS4-208ENST00000464362 CANXP27824 592 aaKnown RBP12.32□□□□□ -0.44
HPS4-208ENST00000464362 CCNB3Q8WWL7 1395 aa12.32□□□□□ -0.44
HPS4-208ENST00000464362 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
HPS4-208ENST00000464362 VPS8Q8N3P4 1428 aa12.3□□□□□ -0.44
HPS4-208ENST00000464362 SENP3Q9H4L4 574 aaPredicted RBP12.29□□□□□ -0.44
HPS4-208ENST00000464362 RGL3Q3MIN7 710 aa12.28□□□□□ -0.44
HPS4-208ENST00000464362 ANP32EQ9BTT0 268 aa12.28□□□□□ -0.44
HPS4-208ENST00000464362 CHGAP10645 457 aaKnown RBP12.27□□□□□ -0.45
HPS4-208ENST00000464362 B4GALNT3Q6L9W6 998 aa12.26□□□□□ -0.45
HPS4-208ENST00000464362 FOXD1Q16676 465 aa12.26□□□□□ -0.45
HPS4-208ENST00000464362 ZBTB47Q9UFB7 747 aaPredicted RBP12.24□□□□□ -0.45
HPS4-208ENST00000464362 TSPY4P0CV99 314 aa12.23□□□□□ -0.45
HPS4-208ENST00000464362 TSPY10P0CW01 314 aa12.23□□□□□ -0.45
HPS4-208ENST00000464362 RAB3GAP2Q9H2M9 1393 aa12.22□□□□□ -0.45
HPS4-208ENST00000464362 ARXQ96QS3 562 aa12.21□□□□□ -0.46
HPS4-208ENST00000464362 CUX2O14529 1486 aa12.2□□□□□ -0.46
HPS4-208ENST00000464362 RAPGEF2Q9Y4G8 1499 aa12.2□□□□□ -0.46
HPS4-208ENST00000464362 SMARCA4P51532 1647 aa12.2□□□□□ -0.46
HPS4-208ENST00000464362 CARMIL1Q5VZK9 1371 aa12.2□□□□□ -0.46
HPS4-208ENST00000464362 TSHZ2Q9NRE2 1034 aa12.2□□□□□ -0.46
HPS4-208ENST00000464362 RBM19Q9Y4C8 960 aaKnown RBP12.19□□□□□ -0.46
HPS4-208ENST00000464362 CHMP7Q8WUX9 453 aaPredicted RBP12.18□□□□□ -0.46
HPS4-208ENST00000464362 EIF5BO60841 1220 aaKnown RBP12.17□□□□□ -0.46
HPS4-208ENST00000464362 CFDP1Q9UEE9 299 aaPredicted RBP12.16□□□□□ -0.46
HPS4-208ENST00000464362 SLC24A1O60721 1099 aa12.15□□□□□ -0.46
HPS4-208ENST00000464362 SETD5Q9C0A6 1442 aa12.15□□□□□ -0.46
HPS4-208ENST00000464362 HSPA5P11021 654 aaKnown RBP12.15□□□□□ -0.46
HPS4-208ENST00000464362 CARD11Q9BXL7 1154 aa12.14□□□□□ -0.47
HPS4-208ENST00000464362 DHX57Q6P158 1386 aaKnown RBP12.14□□□□□ -0.47
HPS4-208ENST00000464362 PEG3Q9GZU2 1588 aa12.14□□□□□ -0.47
HPS4-208ENST00000464362 WDR43Q15061 677 aaKnown RBP eCLIP12.13□□□□□ -0.47
HPS4-208ENST00000464362 PPP1R15AO75807 674 aaPredicted RBP12.12□□□□□ -0.47
HPS4-208ENST00000464362 PPP4R2Q9NY27 417 aa12.11□□□□□ -0.47
HPS4-208ENST00000464362 LAS1LQ9Y4W2 734 aaKnown RBP12.1□□□□□ -0.47
HPS4-208ENST00000464362 TOP2AP11388 1531 aaKnown RBP12.08□□□□□ -0.48
HPS4-208ENST00000464362 PLEKHD1A6NEE1 506 aa12.08□□□□□ -0.48
HPS4-208ENST00000464362 CC2D1BQ5T0F9 858 aaKnown RBP12.08□□□□□ -0.48
HPS4-208ENST00000464362 RTN4Q9NQC3 1192 aaKnown RBP12.07□□□□□ -0.48
HPS4-208ENST00000464362 CCER2I3L3R5 266 aa12.07□□□□□ -0.48
HPS4-208ENST00000464362 TDRD9Q8NDG6 1382 aaKnown RBP12.07□□□□□ -0.48
HPS4-208ENST00000464362 FHAD1B1AJZ9 1412 aa12.06□□□□□ -0.48
HPS4-208ENST00000464362 NEUROD2Q15784 382 aa12.06□□□□□ -0.48
HPS4-208ENST00000464362 DCAF11Q8TEB1 546 aa12.05□□□□□ -0.48
HPS4-208ENST00000464362 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
HPS4-208ENST00000464362 NEFMP07197 916 aa12.05□□□□□ -0.48
HPS4-208ENST00000464362 PLPPR3Q6T4P5 718 aa12.04□□□□□ -0.48
HPS4-208ENST00000464362 FHOD3Q2V2M9 1422 aa12.04□□□□□ -0.48
HPS4-208ENST00000464362 RGS3P49796 1198 aa12.04□□□□□ -0.48
HPS4-208ENST00000464362 L3MBTL2Q969R5 705 aa12.04□□□□□ -0.48
HPS4-208ENST00000464362 TIMELESSQ9UNS1 1208 aa12.02□□□□□ -0.48
HPS4-208ENST00000464362 TNNT2P45379 298 aaPredicted RBP12.02□□□□□ -0.49
HPS4-208ENST00000464362 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.02□□□□□ -0.49
HPS4-208ENST00000464362 HSP90AA1P07900 732 aaKnown RBP12.02□□□□□ -0.49
HPS4-208ENST00000464362 MPHOSPH9Q99550 1183 aa12.02□□□□□ -0.49
HPS4-208ENST00000464362 ARHGAP35Q9NRY4 1499 aa12.01□□□□□ -0.49
HPS4-208ENST00000464362 PKD2Q13563 968 aa12□□□□□ -0.49
HPS4-208ENST00000464362 NOP58Q9Y2X3 529 aaKnown RBP12□□□□□ -0.49
HPS4-208ENST00000464362 UPF2Q9HAU5 1272 aaKnown RBP12□□□□□ -0.49
HPS4-208ENST00000464362 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
HPS4-208ENST00000464362 KNSTRNQ9Y448 316 aa11.98□□□□□ -0.49
HPS4-208ENST00000464362 ATAD2BQ9ULI0 1458 aa11.96□□□□□ -0.49
HPS4-208ENST00000464362 FRAT1Q92837 279 aaPredicted RBP11.95□□□□□ -0.5
HPS4-208ENST00000464362 DEKP35659 375 aaKnown RBP11.94□□□□□ -0.5
HPS4-208ENST00000464362 SMARCA2P51531 1590 aa11.94□□□□□ -0.5
HPS4-208ENST00000464362 PPM1GO15355 546 aaPredicted RBP11.91□□□□□ -0.5
HPS4-208ENST00000464362 PLEKHG5O94827 1062 aa11.91□□□□□ -0.5
HPS4-208ENST00000464362 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
HPS4-208ENST00000464362 PHLDB1Q86UU1 1377 aa11.88□□□□□ -0.51
HPS4-208ENST00000464362 PRKRIP1Q9H875 184 aaPredicted RBP11.88□□□□□ -0.51
HPS4-208ENST00000464362 FMN1Q68DA7 1419 aa11.87□□□□□ -0.51
HPS4-208ENST00000464362 KIF21BO75037 1637 aa11.87□□□□□ -0.51
HPS4-208ENST00000464362 NUP155O75694 1391 aa11.87□□□□□ -0.51
HPS4-208ENST00000464362 RCAN3Q9UKA8 241 aa11.86□□□□□ -0.51
HPS4-208ENST00000464362 SAFB2Q14151 953 aaKnown RBP eCLIP11.86□□□□□ -0.51
HPS4-208ENST00000464362 IGF1RP08069 1367 aa11.85□□□□□ -0.51
HPS4-208ENST00000464362 CADPSQ9ULU8 1353 aa11.85□□□□□ -0.51
HPS4-208ENST00000464362 CC2D2AQ9P2K1 1620 aa11.85□□□□□ -0.51
HPS4-208ENST00000464362 DDRGK1Q96HY6 314 aa11.85□□□□□ -0.51
HPS4-208ENST00000464362 HMGXB3Q12766 1538 aa11.85□□□□□ -0.51
HPS4-208ENST00000464362 ST20-MTHFSA0A0A6YYL1 179 aa11.84□□□□□ -0.51
HPS4-208ENST00000464362 GLIPR1L2Q4G1C9 344 aa11.84□□□□□ -0.51
HPS4-208ENST00000464362 ARAP1Q96P48 1450 aa11.84□□□□□ -0.51
HPS4-208ENST00000464362 HNRNPMP52272 730 aaKnown RBP eCLIP11.84□□□□□ -0.51
HPS4-208ENST00000464362 ESF1Q9H501 851 aaKnown RBP11.84□□□□□ -0.51
HPS4-208ENST00000464362 PLIN1O60240 522 aa11.84□□□□□ -0.51
HPS4-208ENST00000464362 TMF1P82094 1093 aa11.83□□□□□ -0.51
HPS4-208ENST00000464362 SPRYD3Q8NCJ5 442 aa11.83□□□□□ -0.51
HPS4-208ENST00000464362 NUDCQ9Y266 331 aa11.83□□□□□ -0.51
HPS4-208ENST00000464362 PRKCSHP14314 528 aaPredicted RBP11.83□□□□□ -0.52
HPS4-208ENST00000464362 ZNF644Q9H582 1327 aaPredicted RBP11.83□□□□□ -0.52
HPS4-208ENST00000464362 NCAPD3P42695 1498 aa11.82□□□□□ -0.52
HPS4-208ENST00000464362 U2SURPO15042 1029 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms