RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 DHX57Q6P158 1386 aaKnown RBP9.54□□□□□ -0.88
SYNE1-216ENST00000461872 EIF4G2P78344 907 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-216ENST00000461872 NCAPD3P42695 1498 aa9.53□□□□□ -0.88
SYNE1-216ENST00000461872 CARMIL1Q5VZK9 1371 aa9.53□□□□□ -0.88
SYNE1-216ENST00000461872 FKBP8Q14318 412 aa9.53□□□□□ -0.88
SYNE1-216ENST00000461872 SLC24A1O60721 1099 aa9.52□□□□□ -0.89
SYNE1-216ENST00000461872 SUPT16HQ9Y5B9 1047 aaKnown RBP9.52□□□□□ -0.89
SYNE1-216ENST00000461872 PRXQ9BXM0 1461 aa9.52□□□□□ -0.89
SYNE1-216ENST00000461872 BIVM-ERCC5R4GMW8 1640 aa9.51□□□□□ -0.89
SYNE1-216ENST00000461872 TRIM52Q96A61 297 aa9.51□□□□□ -0.89
SYNE1-216ENST00000461872 CUX2O14529 1486 aa9.5□□□□□ -0.89
SYNE1-216ENST00000461872 CCDC18Q5T9S5 1454 aa9.5□□□□□ -0.89
SYNE1-216ENST00000461872 ROCK2O75116 1388 aaKnown RBP9.49□□□□□ -0.89
SYNE1-216ENST00000461872 FYCO1Q9BQS8 1478 aa9.49□□□□□ -0.89
SYNE1-216ENST00000461872 SYNJ1O43426 1573 aa9.49□□□□□ -0.89
SYNE1-216ENST00000461872 RAB3GAP2Q9H2M9 1393 aa9.48□□□□□ -0.89
SYNE1-216ENST00000461872 HNRNPUQ00839 825 aaKnown RBP eCLIP9.48□□□□□ -0.89
SYNE1-216ENST00000461872 PPP4R2Q9NY27 417 aa9.48□□□□□ -0.89
SYNE1-216ENST00000461872 AQRO60306 1485 aaKnown RBP eCLIP9.47□□□□□ -0.89
SYNE1-216ENST00000461872 DDX10Q13206 875 aaKnown RBP9.47□□□□□ -0.89
SYNE1-216ENST00000461872 EIF5BO60841 1220 aaKnown RBP9.45□□□□□ -0.9
SYNE1-216ENST00000461872 CFTRP13569 1480 aa9.45□□□□□ -0.9
SYNE1-216ENST00000461872 DDRGK1Q96HY6 314 aa9.44□□□□□ -0.9
SYNE1-216ENST00000461872 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-216ENST00000461872 CADPSQ9ULU8 1353 aa9.44□□□□□ -0.9
SYNE1-216ENST00000461872 TIAM1Q13009 1591 aa9.44□□□□□ -0.9
SYNE1-216ENST00000461872 KTN1Q86UP2 1357 aaKnown RBP9.43□□□□□ -0.9
SYNE1-216ENST00000461872 CASKIN1Q8WXD9 1431 aa9.42□□□□□ -0.9
SYNE1-216ENST00000461872 THOC2Q8NI27 1593 aaKnown RBP9.42□□□□□ -0.9
SYNE1-216ENST00000461872 CUL7Q14999 1698 aa9.42□□□□□ -0.9
SYNE1-216ENST00000461872 LRRC9Q6ZRR7 1453 aa9.42□□□□□ -0.9
SYNE1-216ENST00000461872 UACAQ9BZF9 1416 aa9.42□□□□□ -0.9
SYNE1-216ENST00000461872 UNC13AQ9UPW8 1703 aa9.41□□□□□ -0.9
SYNE1-216ENST00000461872 MRS2Q9HD23 443 aa9.41□□□□□ -0.9
SYNE1-216ENST00000461872 PHLDB1Q86UU1 1377 aa9.4□□□□□ -0.9
SYNE1-216ENST00000461872 PPM1GO15355 546 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-216ENST00000461872 PPP1R15AO75807 674 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-216ENST00000461872 CDCA8Q53HL2 280 aa9.4□□□□□ -0.9
SYNE1-216ENST00000461872 FANCIQ9NVI1 1328 aa9.4□□□□□ -0.91
SYNE1-216ENST00000461872 CCDC136Q96JN2 1154 aa9.39□□□□□ -0.91
SYNE1-216ENST00000461872 CC2D2AQ9P2K1 1620 aa9.39□□□□□ -0.91
SYNE1-216ENST00000461872 PDS5BQ9NTI5 1447 aa9.39□□□□□ -0.91
SYNE1-216ENST00000461872 PRDM2Q13029 1718 aa9.39□□□□□ -0.91
SYNE1-216ENST00000461872 ZBTB47Q9UFB7 747 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-216ENST00000461872 BCANQ96GW7 911 aa9.39□□□□□ -0.91
SYNE1-216ENST00000461872 ARAP1Q96P48 1450 aa9.37□□□□□ -0.91
SYNE1-216ENST00000461872 AKNAQ7Z591 1439 aa9.37□□□□□ -0.91
SYNE1-216ENST00000461872 EHBP1L1Q8N3D4 1523 aa9.37□□□□□ -0.91
SYNE1-216ENST00000461872 FGD5Q6ZNL6 1462 aa9.37□□□□□ -0.91
SYNE1-216ENST00000461872 MYOM3Q5VTT5 1437 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 RUSC2Q8N2Y8 1516 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 USP35Q9P2H5 1018 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 UPF2Q9HAU5 1272 aaKnown RBP9.36□□□□□ -0.91
SYNE1-216ENST00000461872 HFM1A2PYH4 1435 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 FGD6Q6ZV73 1430 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 TMC1Q8TDI8 760 aa9.36□□□□□ -0.91
SYNE1-216ENST00000461872 PDE3BQ13370 1112 aa9.35□□□□□ -0.91
SYNE1-216ENST00000461872 SUPT6HQ7KZ85 1726 aaKnown RBP9.35□□□□□ -0.91
SYNE1-216ENST00000461872 GLIPR1L2Q4G1C9 344 aa9.34□□□□□ -0.91
SYNE1-216ENST00000461872 ZBED9Q6R2W3 1325 aa9.34□□□□□ -0.91
SYNE1-216ENST00000461872 KIF21AQ7Z4S6 1674 aa9.34□□□□□ -0.91
SYNE1-216ENST00000461872 MIA2Q96PC5 1412 aa9.34□□□□□ -0.91
SYNE1-216ENST00000461872 BICRAQ9NZM4 1560 aa9.33□□□□□ -0.92
SYNE1-216ENST00000461872 TSPY4P0CV99 314 aa9.33□□□□□ -0.92
SYNE1-216ENST00000461872 TSPY10P0CW01 314 aa9.33□□□□□ -0.92
SYNE1-216ENST00000461872 RALBP1Q15311 655 aa9.33□□□□□ -0.92
SYNE1-216ENST00000461872 NGEFQ8N5V2 710 aa9.33□□□□□ -0.92
SYNE1-216ENST00000461872 RSPH4AQ5TD94 716 aa9.32□□□□□ -0.92
SYNE1-216ENST00000461872 TSHZ2Q9NRE2 1034 aa9.31□□□□□ -0.92
SYNE1-216ENST00000461872 IGF1RP08069 1367 aa9.31□□□□□ -0.92
SYNE1-216ENST00000461872 CFAP43Q8NDM7 1665 aa9.31□□□□□ -0.92
SYNE1-216ENST00000461872 KANK4Q5T7N3 995 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-216ENST00000461872 DNMBPQ6XZF7 1577 aa9.31□□□□□ -0.92
SYNE1-216ENST00000461872 RBM19Q9Y4C8 960 aaKnown RBP9.31□□□□□ -0.92
SYNE1-216ENST00000461872 NOP58Q9Y2X3 529 aaKnown RBP9.31□□□□□ -0.92
SYNE1-216ENST00000461872 HECW1Q76N89 1606 aa9.3□□□□□ -0.92
SYNE1-216ENST00000461872 SLC4A1APQ9BWU0 796 aaKnown RBP9.3□□□□□ -0.92
SYNE1-216ENST00000461872 BECN1Q14457 450 aa9.29□□□□□ -0.92
SYNE1-216ENST00000461872 STAC3Q96MF2 364 aa9.29□□□□□ -0.92
SYNE1-216ENST00000461872 POLR3GLQ9BT43 218 aa9.29□□□□□ -0.92
SYNE1-216ENST00000461872 TCERG1O14776 1098 aaKnown RBP9.29□□□□□ -0.92
SYNE1-216ENST00000461872 CARMIL2Q6F5E8 1435 aa9.28□□□□□ -0.92
SYNE1-216ENST00000461872 FANCD2Q9BXW9 1451 aa9.28□□□□□ -0.92
SYNE1-216ENST00000461872 ANKRD30AQ9BXX3 1397 aa9.28□□□□□ -0.92
SYNE1-216ENST00000461872 ABCA10Q8WWZ4 1543 aa9.28□□□□□ -0.92
SYNE1-216ENST00000461872 CNTLNQ9NXG0 1405 aa9.26□□□□□ -0.93
SYNE1-216ENST00000461872 CHMP4BQ9H444 224 aaKnown RBP9.26□□□□□ -0.93
SYNE1-216ENST00000461872 P3H3Q8IVL6 736 aa9.26□□□□□ -0.93
SYNE1-216ENST00000461872 WASHC2AQ641Q2 1341 aa9.26□□□□□ -0.93
SYNE1-216ENST00000461872 WASHC2CQ9Y4E1 1318 aa9.26□□□□□ -0.93
SYNE1-216ENST00000461872 MS4A1P11836 297 aa9.26□□□□□ -0.93
SYNE1-216ENST00000461872 FAM9BQ8IZU0 186 aa9.25□□□□□ -0.93
SYNE1-216ENST00000461872 AAMPQ13685 434 aa9.25□□□□□ -0.93
SYNE1-216ENST00000461872 ROCK1Q13464 1354 aa9.25□□□□□ -0.93
SYNE1-216ENST00000461872 ANP32BQ92688 251 aaKnown RBP9.25□□□□□ -0.93
SYNE1-216ENST00000461872 CFDP1Q9UEE9 299 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-216ENST00000461872 NEFMP07197 916 aa9.24□□□□□ -0.93
SYNE1-216ENST00000461872 CFAP44Q96MT7 982 aa9.24□□□□□ -0.93
SYNE1-216ENST00000461872 KIF15Q9NS87 1388 aa9.24□□□□□ -0.93
SYNE1-216ENST00000461872 PLEKHD1A6NEE1 506 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms