RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 JPH4Q96JJ6 628 aa26.29■■□□□ 1.8
VARS-219ENST00000461328 PRG4Q92954 1404 aaPredicted RBP26.28■■□□□ 1.8
VARS-219ENST00000461328 CARMIL1Q5VZK9 1371 aa26.27■■□□□ 1.8
VARS-219ENST00000461328 KIAA0586Q9BVV6 1533 aa26.22■■□□□ 1.79
VARS-219ENST00000461328 RAPGEF2Q9Y4G8 1499 aa26.07■■□□□ 1.76
VARS-219ENST00000461328 IQGAP2Q13576 1575 aa26.03■■□□□ 1.76
VARS-219ENST00000461328 CARMIL2Q6F5E8 1435 aa25.97■■□□□ 1.75
VARS-219ENST00000461328 NPM1P06748 294 aaKnown RBP eCLIP25.93■■□□□ 1.74
VARS-219ENST00000461328 PTPRGP23470 1445 aa25.92■■□□□ 1.74
VARS-219ENST00000461328 ADCY10Q96PN6 1610 aa25.92■■□□□ 1.74
VARS-219ENST00000461328 TTBK1Q5TCY1 1321 aaPredicted RBP25.91■■□□□ 1.74
VARS-219ENST00000461328 TNIKQ9UKE5 1360 aa25.9■■□□□ 1.74
VARS-219ENST00000461328 PRXQ9BXM0 1461 aa25.88■■□□□ 1.73
VARS-219ENST00000461328 DISP1Q96F81 1524 aa25.86■■□□□ 1.73
VARS-219ENST00000461328 UGGT2Q9NYU1 1516 aa25.86■■□□□ 1.73
VARS-219ENST00000461328 CTTNBP2Q8WZ74 1663 aa25.83■■□□□ 1.73
VARS-219ENST00000461328 MAPKBP1O60336 1514 aa25.82■■□□□ 1.72
VARS-219ENST00000461328 CSRNP3Q8WYN3 585 aa25.79■■□□□ 1.72
VARS-219ENST00000461328 KIAA0556O60303 1618 aa25.78■■□□□ 1.72
VARS-219ENST00000461328 KIF13AQ9H1H9 1805 aa25.77■■□□□ 1.72
VARS-219ENST00000461328 ABCC10Q5T3U5 1492 aa25.75■■□□□ 1.71
VARS-219ENST00000461328 EEA1Q15075 1411 aa25.75■■□□□ 1.71
VARS-219ENST00000461328 UACAQ9BZF9 1416 aa25.73■■□□□ 1.71
VARS-219ENST00000461328 FAM69CQ0P6D2 419 aa25.73■■□□□ 1.71
VARS-219ENST00000461328 ABCC2Q92887 1545 aa25.73■■□□□ 1.71
VARS-219ENST00000461328 UHRF1BP1LA0JNW5 1464 aa25.72■■□□□ 1.71
VARS-219ENST00000461328 GOLGA3Q08378 1498 aa25.72■■□□□ 1.71
VARS-219ENST00000461328 CHIC1Q5VXU3 224 aa25.71■■□□□ 1.71
VARS-219ENST00000461328 DIP2BQ9P265 1576 aa25.69■■□□□ 1.7
VARS-219ENST00000461328 FAM9AQ8IZU1 332 aaPredicted RBP25.67■■□□□ 1.7
VARS-219ENST00000461328 ASXL2Q76L83 1435 aa25.61■■□□□ 1.69
VARS-219ENST00000461328 KDM5BQ9UGL1 1544 aa25.59■■□□□ 1.69
VARS-219ENST00000461328 PLB1Q6P1J6 1458 aa25.59■■□□□ 1.69
VARS-219ENST00000461328 ZCCHC11Q5TAX3 1644 aaKnown RBP25.55■■□□□ 1.68
VARS-219ENST00000461328 P3H3Q8IVL6 736 aa25.53■■□□□ 1.68
VARS-219ENST00000461328 ABCA8O94911 1581 aa25.51■■□□□ 1.67
VARS-219ENST00000461328 KIF21BO75037 1637 aa25.51■■□□□ 1.67
VARS-219ENST00000461328 TSPOAP1O95153 1857 aa25.49■■□□□ 1.67
VARS-219ENST00000461328 GLI2P10070 1586 aa25.48■■□□□ 1.67
VARS-219ENST00000461328 SAMD9Q5K651 1589 aa25.48■■□□□ 1.67
VARS-219ENST00000461328 RANGAP1P46060 587 aaPredicted RBP25.46■■□□□ 1.67
VARS-219ENST00000461328 EPRSP07814 1512 aaKnown RBP25.44■■□□□ 1.66
VARS-219ENST00000461328 WDR7Q9Y4E6 1490 aa25.42■■□□□ 1.66
VARS-219ENST00000461328 EHMT2Q96KQ7 1210 aa25.4■■□□□ 1.66
VARS-219ENST00000461328 KDM6BO15054 1643 aa25.4■■□□□ 1.66
VARS-219ENST00000461328 ARID3CA6NKF2 412 aa25.36■■□□□ 1.65
VARS-219ENST00000461328 MAP3K4Q9Y6R4 1608 aa25.36■■□□□ 1.65
VARS-219ENST00000461328 PPRC1Q5VV67 1664 aaKnown RBP25.35■■□□□ 1.65
VARS-219ENST00000461328 UBTFP17480 764 aaKnown RBP25.34■■□□□ 1.65
VARS-219ENST00000461328 FHOD3Q2V2M9 1422 aa25.34■■□□□ 1.65
VARS-219ENST00000461328 RAPGEF6Q8TEU7 1601 aa25.32■■□□□ 1.64
VARS-219ENST00000461328 EFCAB5A4FU69 1503 aa25.32■■□□□ 1.64
VARS-219ENST00000461328 KCNH8Q96L42 1107 aa25.31■■□□□ 1.64
VARS-219ENST00000461328 ATP10BO94823 1461 aa25.31■■□□□ 1.64
VARS-219ENST00000461328 TEX14Q8IWB6 1497 aa25.29■■□□□ 1.64
VARS-219ENST00000461328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.24■■□□□ 1.63
VARS-219ENST00000461328 HNRNPUL2Q1KMD3 747 aaKnown RBP25.24■■□□□ 1.63
VARS-219ENST00000461328 AEBP2Q6ZN18 517 aaPredicted RBP25.24■■□□□ 1.63
VARS-219ENST00000461328 CD109Q6YHK3 1445 aa25.23■■□□□ 1.63
VARS-219ENST00000461328 CFAP43Q8NDM7 1665 aa25.23■■□□□ 1.63
VARS-219ENST00000461328 NUP153P49790 1475 aaKnown RBP25.22■■□□□ 1.63
VARS-219ENST00000461328 MAGI3Q5TCQ9 1506 aa25.17■■□□□ 1.62
VARS-219ENST00000461328 COL17A1Q9UMD9 1497 aaPredicted RBP25.15■■□□□ 1.62
VARS-219ENST00000461328 ARHGAP35Q9NRY4 1499 aa25.13■■□□□ 1.61
VARS-219ENST00000461328 ABCA9Q8IUA7 1624 aa25.1■■□□□ 1.61
VARS-219ENST00000461328 FMN1Q68DA7 1419 aa25.1■■□□□ 1.61
VARS-219ENST00000461328 PLEKHD1A6NEE1 506 aa25.08■■□□□ 1.61
VARS-219ENST00000461328 ATP1B4Q9UN42 357 aaPredicted RBP25.05■■□□□ 1.6
VARS-219ENST00000461328 CDK13Q14004 1512 aaKnown RBP25.02■■□□□ 1.6
VARS-219ENST00000461328 HECW1Q76N89 1606 aa25.01■■□□□ 1.59
VARS-219ENST00000461328 PHLDB1Q86UU1 1377 aa24.97■■□□□ 1.59
VARS-219ENST00000461328 ARAP3Q8WWN8 1544 aa24.96■■□□□ 1.59
VARS-219ENST00000461328 KDM4FA0A1W2PPD8 638 aa24.96■■□□□ 1.59
VARS-219ENST00000461328 NEO1Q92859 1461 aa24.95■■□□□ 1.58
VARS-219ENST00000461328 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.92■■□□□ 1.58
VARS-219ENST00000461328 CDK11AQ9UQ88 783 aaPredicted RBP24.91■■□□□ 1.58
VARS-219ENST00000461328 TTC37Q6PGP7 1564 aa24.89■■□□□ 1.58
VARS-219ENST00000461328 CLIP1P30622 1438 aa24.88■■□□□ 1.57
VARS-219ENST00000461328 ADGRL1O94910 1474 aa24.88■■□□□ 1.57
VARS-219ENST00000461328 PCF11O94913 1555 aaKnown RBP24.86■■□□□ 1.57
VARS-219ENST00000461328 CASKIN1Q8WXD9 1431 aa24.86■■□□□ 1.57
VARS-219ENST00000461328 FANCAO15360 1455 aa24.85■■□□□ 1.57
VARS-219ENST00000461328 RAPGEF3O95398 923 aa24.85■■□□□ 1.57
VARS-219ENST00000461328 CFAP74Q9C0B2 1584 aa24.84■■□□□ 1.57
VARS-219ENST00000461328 LRRIQ1Q96JM4 1722 aa24.82■■□□□ 1.56
VARS-219ENST00000461328 TROQ12816 1431 aaPredicted RBP24.81■■□□□ 1.56
VARS-219ENST00000461328 AKNAQ7Z591 1439 aa24.81■■□□□ 1.56
VARS-219ENST00000461328 CCDC18Q5T9S5 1454 aa24.81■■□□□ 1.56
VARS-219ENST00000461328 KIF14Q15058 1648 aa24.8■■□□□ 1.56
VARS-219ENST00000461328 PLCH2O75038 1416 aa24.78■■□□□ 1.56
VARS-219ENST00000461328 DENND4BO75064 1496 aaPredicted RBP24.78■■□□□ 1.56
VARS-219ENST00000461328 FYCO1Q9BQS8 1478 aa24.78■■□□□ 1.56
VARS-219ENST00000461328 FRMPD1Q5SYB0 1578 aa24.78■■□□□ 1.56
VARS-219ENST00000461328 MYO5CQ9NQX4 1742 aa24.74■■□□□ 1.55
VARS-219ENST00000461328 CEP162Q5TB80 1403 aa24.73■■□□□ 1.55
VARS-219ENST00000461328 RICTORQ6R327 1708 aa24.72■■□□□ 1.55
VARS-219ENST00000461328 EFCAB2Q5VUJ9 269 aa24.7■■□□□ 1.54
VARS-219ENST00000461328 SCAPERQ9BY12 1400 aa24.68■■□□□ 1.54
VARS-219ENST00000461328 ARHGAP5Q13017 1502 aa24.67■■□□□ 1.54
VARS-219ENST00000461328 LOC105371045A0A1W2PR82 267 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms