RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FANCIQ9NVI1 1328 aa16.38■□□□□ 0.21
CPSF3-202ENST00000460593 DEKP35659 375 aaKnown RBP16.38■□□□□ 0.21
CPSF3-202ENST00000460593 ATP1B4Q9UN42 357 aaPredicted RBP16.37■□□□□ 0.21
CPSF3-202ENST00000460593 NBR1Q14596 966 aa16.37■□□□□ 0.21
CPSF3-202ENST00000460593 SETD5Q9C0A6 1442 aa16.36■□□□□ 0.21
CPSF3-202ENST00000460593 PRKCSHP14314 528 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-202ENST00000460593 PRXQ9BXM0 1461 aa16.35■□□□□ 0.21
CPSF3-202ENST00000460593 B4GALNT3Q6L9W6 998 aa16.33■□□□□ 0.2
CPSF3-202ENST00000460593 UNC13AQ9UPW8 1703 aa16.32■□□□□ 0.2
CPSF3-202ENST00000460593 ARHGAP35Q9NRY4 1499 aa16.32■□□□□ 0.2
CPSF3-202ENST00000460593 P3H3Q8IVL6 736 aa16.32■□□□□ 0.2
CPSF3-202ENST00000460593 PHLDB1Q86UU1 1377 aa16.31■□□□□ 0.2
CPSF3-202ENST00000460593 CCDC184Q52MB2 194 aa16.29■□□□□ 0.2
CPSF3-202ENST00000460593 PAK3O75914 559 aaPredicted RBP16.27■□□□□ 0.2
CPSF3-202ENST00000460593 TOP2BQ02880 1626 aa16.26■□□□□ 0.19
CPSF3-202ENST00000460593 ERICH3Q5RHP9 1530 aa16.25■□□□□ 0.19
CPSF3-202ENST00000460593 SENP3-EIF4A1A0A087X0R7 540 aa16.24■□□□□ 0.19
CPSF3-202ENST00000460593 ANO8Q9HCE9 1232 aaPredicted RBP16.24■□□□□ 0.19
CPSF3-202ENST00000460593 TONSLQ96HA7 1378 aa16.22■□□□□ 0.19
CPSF3-202ENST00000460593 FAM9BQ8IZU0 186 aa16.22■□□□□ 0.19
CPSF3-202ENST00000460593 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
CPSF3-202ENST00000460593 CNGB1Q14028 1251 aaPredicted RBP16.21■□□□□ 0.19
CPSF3-202ENST00000460593 PPP4R2Q9NY27 417 aa16.2■□□□□ 0.18
CPSF3-202ENST00000460593 NOP58Q9Y2X3 529 aaKnown RBP16.17■□□□□ 0.18
CPSF3-202ENST00000460593 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
CPSF3-202ENST00000460593 TIAM1Q13009 1591 aa16.15■□□□□ 0.18
CPSF3-202ENST00000460593 LRRC9Q6ZRR7 1453 aa16.15■□□□□ 0.18
CPSF3-202ENST00000460593 PEG3Q9GZU2 1588 aa16.14■□□□□ 0.17
CPSF3-202ENST00000460593 RTN4Q9NQC3 1192 aaKnown RBP16.14■□□□□ 0.17
CPSF3-202ENST00000460593 WASHC2AQ641Q2 1341 aa16.14■□□□□ 0.17
CPSF3-202ENST00000460593 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
CPSF3-202ENST00000460593 TIMELESSQ9UNS1 1208 aa16.13■□□□□ 0.17
CPSF3-202ENST00000460593 CUX1P39880 1505 aa16.12■□□□□ 0.17
CPSF3-202ENST00000460593 HSPA5P11021 654 aaKnown RBP16.12■□□□□ 0.17
CPSF3-202ENST00000460593 SALL2Q9Y467 1007 aaPredicted RBP16.12■□□□□ 0.17
CPSF3-202ENST00000460593 BIVM-ERCC5R4GMW8 1640 aa16.11■□□□□ 0.17
CPSF3-202ENST00000460593 CCDC136Q96JN2 1154 aa16.1■□□□□ 0.17
CPSF3-202ENST00000460593 IL27Q8NEV9 243 aa16.08■□□□□ 0.16
CPSF3-202ENST00000460593 MRS2Q9HD23 443 aa16.08■□□□□ 0.16
CPSF3-202ENST00000460593 C11orf95C9JLR9 678 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-202ENST00000460593 MYT1LQ9UL68 1186 aa16.06■□□□□ 0.16
CPSF3-202ENST00000460593 AQRO60306 1485 aaKnown RBP eCLIP16.02■□□□□ 0.161e-6■■■■□ 26.3
CPSF3-202ENST00000460593 IGF1RP08069 1367 aa16.02■□□□□ 0.16
CPSF3-202ENST00000460593 PTPRKQ15262 1439 aa16.01■□□□□ 0.15
CPSF3-202ENST00000460593 AKNAQ7Z591 1439 aa16.01■□□□□ 0.15
CPSF3-202ENST00000460593 CCDC18Q5T9S5 1454 aa16.01■□□□□ 0.15
CPSF3-202ENST00000460593 FHOD3Q2V2M9 1422 aa16.01■□□□□ 0.15
CPSF3-202ENST00000460593 NPM2Q86SE8 214 aaKnown RBP16.01■□□□□ 0.15
CPSF3-202ENST00000460593 ZBTB4Q9P1Z0 1013 aaPredicted RBP16■□□□□ 0.15
CPSF3-202ENST00000460593 RTL5Q5HYW3 569 aaPredicted RBP16■□□□□ 0.15
CPSF3-202ENST00000460593 ERICH6BQ5W0A0 696 aa15.99■□□□□ 0.15
CPSF3-202ENST00000460593 PRKRIP1Q9H875 184 aaPredicted RBP15.99■□□□□ 0.15
CPSF3-202ENST00000460593 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
CPSF3-202ENST00000460593 FOXD1Q16676 465 aa15.99■□□□□ 0.15
CPSF3-202ENST00000460593 RRP7BPQ9NSQ0 103 aa15.98■□□□□ 0.15
CPSF3-202ENST00000460593 PCF11O94913 1555 aaKnown RBP15.98■□□□□ 0.15
CPSF3-202ENST00000460593 CARMIL1Q5VZK9 1371 aa15.98■□□□□ 0.15
CPSF3-202ENST00000460593 ANP32AP39687 249 aaKnown RBP15.97■□□□□ 0.15
CPSF3-202ENST00000460593 IPO9Q96P70 1041 aaKnown RBP15.97■□□□□ 0.15
CPSF3-202ENST00000460593 ZBTB47Q9UFB7 747 aaPredicted RBP15.97■□□□□ 0.15
CPSF3-202ENST00000460593 FHAD1B1AJZ9 1412 aa15.96■□□□□ 0.15
CPSF3-202ENST00000460593 EIF4G2P78344 907 aaKnown RBP eCLIP15.96■□□□□ 0.15
CPSF3-202ENST00000460593 LAS1LQ9Y4W2 734 aaKnown RBP15.96■□□□□ 0.15
CPSF3-202ENST00000460593 POLR3GLQ9BT43 218 aa15.95■□□□□ 0.14
CPSF3-202ENST00000460593 ZBED9Q6R2W3 1325 aa15.95■□□□□ 0.14
CPSF3-202ENST00000460593 KDM5BQ9UGL1 1544 aa15.94■□□□□ 0.14
CPSF3-202ENST00000460593 MAP3K1Q13233 1512 aa15.94■□□□□ 0.14
CPSF3-202ENST00000460593 CNTLNQ9NXG0 1405 aa15.92■□□□□ 0.14
CPSF3-202ENST00000460593 UACAQ9BZF9 1416 aa15.92■□□□□ 0.14
CPSF3-202ENST00000460593 FGD6Q6ZV73 1430 aa15.91■□□□□ 0.14
CPSF3-202ENST00000460593 L3MBTL2Q969R5 705 aa15.9■□□□□ 0.14
CPSF3-202ENST00000460593 CCDC7Q96M83 1385 aa15.87■□□□□ 0.13
CPSF3-202ENST00000460593 NAIPQ13075 1403 aa15.87■□□□□ 0.13
CPSF3-202ENST00000460593 HFM1A2PYH4 1435 aa15.86■□□□□ 0.13
CPSF3-202ENST00000460593 CFAP43Q8NDM7 1665 aa15.86■□□□□ 0.13
CPSF3-202ENST00000460593 MTUS2Q5JR59 1369 aa15.86■□□□□ 0.13
CPSF3-202ENST00000460593 PTPN23Q9H3S7 1636 aa15.85■□□□□ 0.13
CPSF3-202ENST00000460593 NBPF8Q3BBV2 869 aa15.85■□□□□ 0.13
CPSF3-202ENST00000460593 NEFMP07197 916 aa15.84■□□□□ 0.13
CPSF3-202ENST00000460593 NCOA2Q15596 1464 aa15.84■□□□□ 0.13
CPSF3-202ENST00000460593 SKAP1Q86WV1 359 aa15.83■□□□□ 0.13
CPSF3-202ENST00000460593 KIF7Q2M1P5 1343 aa15.83■□□□□ 0.12
CPSF3-202ENST00000460593 NUDCQ9Y266 331 aa15.83■□□□□ 0.12
CPSF3-202ENST00000460593 ARID3CA6NKF2 412 aa15.81■□□□□ 0.12
CPSF3-202ENST00000460593 DENND4BO75064 1496 aaPredicted RBP15.79■□□□□ 0.12
CPSF3-202ENST00000460593 NCOA1Q15788 1441 aa15.79■□□□□ 0.12
CPSF3-202ENST00000460593 FMN1Q68DA7 1419 aa15.79■□□□□ 0.12
CPSF3-202ENST00000460593 ZNF326Q5BKZ1 582 aaKnown RBP15.78■□□□□ 0.12
CPSF3-202ENST00000460593 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.78■□□□□ 0.12
CPSF3-202ENST00000460593 BRPF3Q9ULD4 1205 aa15.78■□□□□ 0.12
CPSF3-202ENST00000460593 EXOC6Q8TAG9 804 aa15.77■□□□□ 0.12
CPSF3-202ENST00000460593 MPHOSPH9Q99550 1183 aa15.77■□□□□ 0.12
CPSF3-202ENST00000460593 SMG6Q86US8 1419 aaKnown RBP15.77■□□□□ 0.12
CPSF3-202ENST00000460593 FGD5Q6ZNL6 1462 aa15.77■□□□□ 0.12
CPSF3-202ENST00000460593 CFTRP13569 1480 aa15.77■□□□□ 0.12
CPSF3-202ENST00000460593 CASKIN1Q8WXD9 1431 aa15.77■□□□□ 0.12
CPSF3-202ENST00000460593 FYCO1Q9BQS8 1478 aa15.76■□□□□ 0.11
CPSF3-202ENST00000460593 KDM6BO15054 1643 aa15.74■□□□□ 0.11
CPSF3-202ENST00000460593 SLC4A3P48751 1232 aa15.73■□□□□ 0.11
CPSF3-202ENST00000460593 PDE4AP27815 886 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms