RNA–Protein interactions for RNA: ENST00000460110.5

NUDCD3-203, Transcript of NudC domain containing 3, humanhuman

TSL 1 (best)

Gene NUDCD3, Length 3,641 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-203ENST00000460110 ABCA10Q8WWZ4 1543 aa13.85□□□□□ -0.19
NUDCD3-203ENST00000460110 MTUS2Q5JR59 1369 aa13.82□□□□□ -0.2
NUDCD3-203ENST00000460110 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
NUDCD3-203ENST00000460110 ZNF608Q9ULD9 1512 aaPredicted RBP13.81□□□□□ -0.2
NUDCD3-203ENST00000460110 KIF21AQ7Z4S6 1674 aa13.8□□□□□ -0.2
NUDCD3-203ENST00000460110 CHIC2Q9UKJ5 165 aa13.8□□□□□ -0.2
NUDCD3-203ENST00000460110 NEUROD1Q13562 356 aa13.79□□□□□ -0.2
NUDCD3-203ENST00000460110 ZNF777Q9ULD5 760 aaPredicted RBP13.76□□□□□ -0.21
NUDCD3-203ENST00000460110 FHAD1B1AJZ9 1412 aa13.76□□□□□ -0.21
NUDCD3-203ENST00000460110 CCNB3Q8WWL7 1395 aa13.75□□□□□ -0.21
NUDCD3-203ENST00000460110 PRDM2Q13029 1718 aa13.74□□□□□ -0.21
NUDCD3-203ENST00000460110 TRIM52Q96A61 297 aa13.7□□□□□ -0.22
NUDCD3-203ENST00000460110 GRIN2BQ13224 1484 aa13.7□□□□□ -0.22
NUDCD3-203ENST00000460110 JPH4Q96JJ6 628 aa13.7□□□□□ -0.22
NUDCD3-203ENST00000460110 RRP7BPQ9NSQ0 103 aa13.69□□□□□ -0.22
NUDCD3-203ENST00000460110 PELP1Q8IZL8 1130 aaKnown RBP13.69□□□□□ -0.22
NUDCD3-203ENST00000460110 FMN1Q68DA7 1419 aa13.68□□□□□ -0.22
NUDCD3-203ENST00000460110 PHLDB1Q86UU1 1377 aa13.67□□□□□ -0.22
NUDCD3-203ENST00000460110 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
NUDCD3-203ENST00000460110 IFT140Q96RY7 1462 aa13.67□□□□□ -0.22
NUDCD3-203ENST00000460110 DIEXFQ68CQ4 756 aaKnown RBP13.66□□□□□ -0.22
NUDCD3-203ENST00000460110 CDK11AQ9UQ88 783 aaPredicted RBP13.65□□□□□ -0.22
NUDCD3-203ENST00000460110 YTHDC1Q96MU7 727 aaKnown RBP13.63□□□□□ -0.23
NUDCD3-203ENST00000460110 SIN3AQ96ST3 1273 aa13.62□□□□□ -0.23
NUDCD3-203ENST00000460110 LRRC9Q6ZRR7 1453 aa13.61□□□□□ -0.23
NUDCD3-203ENST00000460110 KCNH8Q96L42 1107 aa13.61□□□□□ -0.23
NUDCD3-203ENST00000460110 ZNF316A6NFI3 1004 aaPredicted RBP13.59□□□□□ -0.23
NUDCD3-203ENST00000460110 CUL7Q14999 1698 aa13.58□□□□□ -0.24
NUDCD3-203ENST00000460110 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.24
NUDCD3-203ENST00000460110 CASKIN1Q8WXD9 1431 aa13.58□□□□□ -0.24
NUDCD3-203ENST00000460110 PCF11O94913 1555 aaKnown RBP13.57□□□□□ -0.24
NUDCD3-203ENST00000460110 TARBP1Q13395 1621 aaKnown RBP13.57□□□□□ -0.24
NUDCD3-203ENST00000460110 PLEKHD1A6NEE1 506 aa13.57□□□□□ -0.24
NUDCD3-203ENST00000460110 HIRIP3Q9BW71 556 aaPredicted RBP13.56□□□□□ -0.24
NUDCD3-203ENST00000460110 ABCA5Q8WWZ7 1642 aa13.55□□□□□ -0.24
NUDCD3-203ENST00000460110 CFDP1Q9UEE9 299 aaPredicted RBP13.55□□□□□ -0.24
NUDCD3-203ENST00000460110 TIAM1Q13009 1591 aa13.55□□□□□ -0.24
NUDCD3-203ENST00000460110 MYT1LQ9UL68 1186 aa13.54□□□□□ -0.24
NUDCD3-203ENST00000460110 ZNF644Q9H582 1327 aaPredicted RBP13.54□□□□□ -0.24
NUDCD3-203ENST00000460110 DHX57Q6P158 1386 aaKnown RBP13.52□□□□□ -0.25
NUDCD3-203ENST00000460110 WDR62O43379 1518 aa13.52□□□□□ -0.25
NUDCD3-203ENST00000460110 GRIN2AQ12879 1464 aa13.52□□□□□ -0.25
NUDCD3-203ENST00000460110 RRBP1Q9P2E9 1410 aaKnown RBP13.51□□□□□ -0.25
NUDCD3-203ENST00000460110 FYCO1Q9BQS8 1478 aa13.51□□□□□ -0.25
NUDCD3-203ENST00000460110 CARMIL2Q6F5E8 1435 aa13.51□□□□□ -0.25
NUDCD3-203ENST00000460110 EFCAB5A4FU69 1503 aa13.51□□□□□ -0.25
NUDCD3-203ENST00000460110 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
NUDCD3-203ENST00000460110 IQGAP2Q13576 1575 aa13.5□□□□□ -0.25
NUDCD3-203ENST00000460110 FOXD1Q16676 465 aa13.5□□□□□ -0.25
NUDCD3-203ENST00000460110 CDK13Q14004 1512 aaKnown RBP13.49□□□□□ -0.25
NUDCD3-203ENST00000460110 KIAA0586Q9BVV6 1533 aa13.48□□□□□ -0.25
NUDCD3-203ENST00000460110 EIF4G3O43432 1585 aaKnown RBP13.47□□□□□ -0.25
NUDCD3-203ENST00000460110 NCOA2Q15596 1464 aa13.47□□□□□ -0.25
NUDCD3-203ENST00000460110 FGD6Q6ZV73 1430 aa13.46□□□□□ -0.25
NUDCD3-203ENST00000460110 SYNJ2O15056 1496 aa13.46□□□□□ -0.25
NUDCD3-203ENST00000460110 ADAMTS12P58397 1594 aa13.46□□□□□ -0.25
NUDCD3-203ENST00000460110 PLB1Q6P1J6 1458 aa13.45□□□□□ -0.26
NUDCD3-203ENST00000460110 ZNF326Q5BKZ1 582 aaKnown RBP13.45□□□□□ -0.26
NUDCD3-203ENST00000460110 PTPRGP23470 1445 aa13.45□□□□□ -0.26
NUDCD3-203ENST00000460110 PRG4Q92954 1404 aaPredicted RBP13.44□□□□□ -0.26
NUDCD3-203ENST00000460110 CTTNBP2Q8WZ74 1663 aa13.44□□□□□ -0.26
NUDCD3-203ENST00000460110 CNGB1Q14028 1251 aaPredicted RBP13.43□□□□□ -0.26
NUDCD3-203ENST00000460110 PBRM1Q86U86 1689 aa13.43□□□□□ -0.26
NUDCD3-203ENST00000460110 WDR97A6NE52 1622 aa13.43□□□□□ -0.26
NUDCD3-203ENST00000460110 MAGI1Q96QZ7 1491 aaPredicted RBP13.42□□□□□ -0.26
NUDCD3-203ENST00000460110 EPRSP07814 1512 aaKnown RBP13.42□□□□□ -0.26
NUDCD3-203ENST00000460110 MYOM3Q5VTT5 1437 aa13.41□□□□□ -0.26
NUDCD3-203ENST00000460110 TSPY4P0CV99 314 aa13.41□□□□□ -0.26
NUDCD3-203ENST00000460110 TSPY10P0CW01 314 aa13.41□□□□□ -0.26
NUDCD3-203ENST00000460110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.268e-7■□□□□ 9.5
NUDCD3-203ENST00000460110 HNRNPMP52272 730 aaKnown RBP eCLIP13.41□□□□□ -0.262e-6■■■■□ 19.5
NUDCD3-203ENST00000460110 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
NUDCD3-203ENST00000460110 MIER1Q8N108 512 aa13.4□□□□□ -0.26
NUDCD3-203ENST00000460110 POLR3GLQ9BT43 218 aa13.4□□□□□ -0.26
NUDCD3-203ENST00000460110 TONSLQ96HA7 1378 aa13.39□□□□□ -0.27
NUDCD3-203ENST00000460110 THOC2Q8NI27 1593 aaKnown RBP13.38□□□□□ -0.27
NUDCD3-203ENST00000460110 CCDC18Q5T9S5 1454 aa13.38□□□□□ -0.27
NUDCD3-203ENST00000460110 DISP1Q96F81 1524 aa13.36□□□□□ -0.27
NUDCD3-203ENST00000460110 DDX10Q13206 875 aaKnown RBP13.36□□□□□ -0.27
NUDCD3-203ENST00000460110 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
NUDCD3-203ENST00000460110 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
NUDCD3-203ENST00000460110 PTPRKQ15262 1439 aa13.35□□□□□ -0.27
NUDCD3-203ENST00000460110 NPM1P06748 294 aaKnown RBP eCLIP13.32□□□□□ -0.28
NUDCD3-203ENST00000460110 SAMD9Q5K651 1589 aa13.32□□□□□ -0.28
NUDCD3-203ENST00000460110 MPHOSPH9Q99550 1183 aa13.32□□□□□ -0.28
NUDCD3-203ENST00000460110 CEP170Q5SW79 1584 aa13.32□□□□□ -0.28
NUDCD3-203ENST00000460110 NUP153P49790 1475 aaKnown RBP13.32□□□□□ -0.28
NUDCD3-203ENST00000460110 HECW1Q76N89 1606 aa13.31□□□□□ -0.28
NUDCD3-203ENST00000460110 MAGI3Q5TCQ9 1506 aa13.31□□□□□ -0.28
NUDCD3-203ENST00000460110 UGGT2Q9NYU1 1516 aa13.31□□□□□ -0.28
NUDCD3-203ENST00000460110 CENPBP07199 599 aaPredicted RBP13.31□□□□□ -0.28
NUDCD3-203ENST00000460110 EHBP1L1Q8N3D4 1523 aa13.3□□□□□ -0.28
NUDCD3-203ENST00000460110 KDM2AQ9Y2K7 1162 aa13.29□□□□□ -0.28
NUDCD3-203ENST00000460110 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
NUDCD3-203ENST00000460110 KIAA0556O60303 1618 aa13.28□□□□□ -0.28
NUDCD3-203ENST00000460110 NUP160Q12769 1436 aa13.28□□□□□ -0.28
NUDCD3-203ENST00000460110 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.28
NUDCD3-203ENST00000460110 SUPT6HQ7KZ85 1726 aaKnown RBP13.26□□□□□ -0.29
NUDCD3-203ENST00000460110 CFAP43Q8NDM7 1665 aa13.26□□□□□ -0.29
NUDCD3-203ENST00000460110 MYT1Q01538 1121 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 935 ms