RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 RUSC2Q8N2Y8 1516 aa16.96■□□□□ 0.31
ATG4A-206ENST00000457035 FHAD1B1AJZ9 1412 aa16.95■□□□□ 0.3
ATG4A-206ENST00000457035 ARAP1Q96P48 1450 aa16.94■□□□□ 0.3
ATG4A-206ENST00000457035 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
ATG4A-206ENST00000457035 MAPK8IP2Q13387 824 aaPredicted RBP16.91■□□□□ 0.3
ATG4A-206ENST00000457035 CLASP1Q7Z460 1538 aa16.91■□□□□ 0.3
ATG4A-206ENST00000457035 GRIN2AQ12879 1464 aa16.89■□□□□ 0.29
ATG4A-206ENST00000457035 PPP4R3CPQ6ZMV5 832 aa16.88■□□□□ 0.29
ATG4A-206ENST00000457035 CARMIL1Q5VZK9 1371 aa16.88■□□□□ 0.29
ATG4A-206ENST00000457035 CUL7Q14999 1698 aa16.87■□□□□ 0.29
ATG4A-206ENST00000457035 TRHP20396 242 aaPredicted RBP16.84■□□□□ 0.29
ATG4A-206ENST00000457035 NUP160Q12769 1436 aa16.82■□□□□ 0.28
ATG4A-206ENST00000457035 CSRNP3Q8WYN3 585 aa16.81■□□□□ 0.28
ATG4A-206ENST00000457035 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
ATG4A-206ENST00000457035 EEA1Q15075 1411 aa16.78■□□□□ 0.28
ATG4A-206ENST00000457035 DMRT2Q9Y5R5 561 aa16.77■□□□□ 0.28
ATG4A-206ENST00000457035 RAPGEF2Q9Y4G8 1499 aa16.77■□□□□ 0.28
ATG4A-206ENST00000457035 PRXQ9BXM0 1461 aa16.76■□□□□ 0.27
ATG4A-206ENST00000457035 FAM9AQ8IZU1 332 aaPredicted RBP16.76■□□□□ 0.27
ATG4A-206ENST00000457035 JPH4Q96JJ6 628 aa16.71■□□□□ 0.27
ATG4A-206ENST00000457035 KIAA0586Q9BVV6 1533 aa16.7■□□□□ 0.26
ATG4A-206ENST00000457035 SHROOM2Q13796 1616 aa16.68■□□□□ 0.26
ATG4A-206ENST00000457035 ERCC6L2Q5T890 1561 aa16.67■□□□□ 0.26
ATG4A-206ENST00000457035 PRG4Q92954 1404 aaPredicted RBP16.62■□□□□ 0.25
ATG4A-206ENST00000457035 IQGAP2Q13576 1575 aa16.6■□□□□ 0.25
ATG4A-206ENST00000457035 KIF21BO75037 1637 aa16.59■□□□□ 0.25
ATG4A-206ENST00000457035 CTTNBP2Q8WZ74 1663 aa16.59■□□□□ 0.25
ATG4A-206ENST00000457035 UGGT2Q9NYU1 1516 aa16.53■□□□□ 0.24
ATG4A-206ENST00000457035 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.24
ATG4A-206ENST00000457035 KIF13AQ9H1H9 1805 aa16.51■□□□□ 0.23
ATG4A-206ENST00000457035 DISP1Q96F81 1524 aa16.5■□□□□ 0.23
ATG4A-206ENST00000457035 CNKSR2Q8WXI2 1034 aa16.5■□□□□ 0.23
ATG4A-206ENST00000457035 CARMIL2Q6F5E8 1435 aa16.5■□□□□ 0.23
ATG4A-206ENST00000457035 GOLGA3Q08378 1498 aa16.49■□□□□ 0.23
ATG4A-206ENST00000457035 UBTFP17480 764 aaKnown RBP16.49■□□□□ 0.23
ATG4A-206ENST00000457035 TNIKQ9UKE5 1360 aa16.46■□□□□ 0.23
ATG4A-206ENST00000457035 PTPRGP23470 1445 aa16.45■□□□□ 0.22
ATG4A-206ENST00000457035 KIAA0556O60303 1618 aa16.44■□□□□ 0.22
ATG4A-206ENST00000457035 TTBK1Q5TCY1 1321 aaPredicted RBP16.41■□□□□ 0.22
ATG4A-206ENST00000457035 RANGAP1P46060 587 aaPredicted RBP16.4■□□□□ 0.22
ATG4A-206ENST00000457035 P3H3Q8IVL6 736 aa16.4■□□□□ 0.22
ATG4A-206ENST00000457035 SAMD9Q5K651 1589 aa16.38■□□□□ 0.21
ATG4A-206ENST00000457035 LOC105371045A0A1W2PR82 267 aa16.36■□□□□ 0.21
ATG4A-206ENST00000457035 ADCY10Q96PN6 1610 aa16.36■□□□□ 0.21
ATG4A-206ENST00000457035 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
ATG4A-206ENST00000457035 TSPOAP1O95153 1857 aa16.33■□□□□ 0.21
ATG4A-206ENST00000457035 UACAQ9BZF9 1416 aa16.33■□□□□ 0.2
ATG4A-206ENST00000457035 EFCAB5A4FU69 1503 aa16.31■□□□□ 0.2
ATG4A-206ENST00000457035 HOXD11P31277 338 aaPredicted RBP16.31■□□□□ 0.2
ATG4A-206ENST00000457035 UHRF1BP1LA0JNW5 1464 aa16.3■□□□□ 0.2
ATG4A-206ENST00000457035 DIP2BQ9P265 1576 aa16.3■□□□□ 0.2
ATG4A-206ENST00000457035 ARHGAP35Q9NRY4 1499 aa16.29■□□□□ 0.2
ATG4A-206ENST00000457035 FHOD3Q2V2M9 1422 aa16.29■□□□□ 0.2
ATG4A-206ENST00000457035 NPM1P06748 294 aaKnown RBP eCLIP16.29■□□□□ 0.2
ATG4A-206ENST00000457035 MAPKBP1O60336 1514 aa16.29■□□□□ 0.2
ATG4A-206ENST00000457035 PLB1Q6P1J6 1458 aa16.29■□□□□ 0.2
ATG4A-206ENST00000457035 ABCA8O94911 1581 aa16.27■□□□□ 0.2
ATG4A-206ENST00000457035 RNF216Q9NWF9 866 aaPredicted RBP16.27■□□□□ 0.2
ATG4A-206ENST00000457035 ABCC2Q92887 1545 aa16.27■□□□□ 0.2
ATG4A-206ENST00000457035 ABCC10Q5T3U5 1492 aa16.27■□□□□ 0.19
ATG4A-206ENST00000457035 FAM69CQ0P6D2 419 aa16.26■□□□□ 0.19
ATG4A-206ENST00000457035 KDM5BQ9UGL1 1544 aa16.23■□□□□ 0.19
ATG4A-206ENST00000457035 CLIP1P30622 1438 aa16.22■□□□□ 0.19
ATG4A-206ENST00000457035 KDM6BO15054 1643 aa16.2■□□□□ 0.18
ATG4A-206ENST00000457035 RAPGEF6Q8TEU7 1601 aa16.19■□□□□ 0.18
ATG4A-206ENST00000457035 ZCCHC11Q5TAX3 1644 aaKnown RBP16.18■□□□□ 0.18
ATG4A-206ENST00000457035 CEP162Q5TB80 1403 aa16.18■□□□□ 0.18
ATG4A-206ENST00000457035 FMN1Q68DA7 1419 aa16.18■□□□□ 0.18
ATG4A-206ENST00000457035 ATP10BO94823 1461 aa16.17■□□□□ 0.18
ATG4A-206ENST00000457035 ARID3CA6NKF2 412 aa16.15■□□□□ 0.18
ATG4A-206ENST00000457035 ASXL2Q76L83 1435 aa16.15■□□□□ 0.18
ATG4A-206ENST00000457035 NUP153P49790 1475 aaKnown RBP16.15■□□□□ 0.18
ATG4A-206ENST00000457035 PPRC1Q5VV67 1664 aaKnown RBP16.11■□□□□ 0.17
ATG4A-206ENST00000457035 ATP1B4Q9UN42 357 aaPredicted RBP16.1■□□□□ 0.17
ATG4A-206ENST00000457035 NPM3O75607 178 aaKnown RBP16.09■□□□□ 0.17
ATG4A-206ENST00000457035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.08■□□□□ 0.16
ATG4A-206ENST00000457035 HNRNPUL2Q1KMD3 747 aaKnown RBP16.08■□□□□ 0.16
ATG4A-206ENST00000457035 CASKIN1Q8WXD9 1431 aa16.08■□□□□ 0.16
ATG4A-206ENST00000457035 WDR7Q9Y4E6 1490 aa16.07■□□□□ 0.16
ATG4A-206ENST00000457035 LRRIQ1Q96JM4 1722 aa16.06■□□□□ 0.16
ATG4A-206ENST00000457035 HECW1Q76N89 1606 aa16.06■□□□□ 0.16
ATG4A-206ENST00000457035 EPRSP07814 1512 aaKnown RBP16.06■□□□□ 0.16
ATG4A-206ENST00000457035 KCNA4P22459 653 aa16.06■□□□□ 0.16
ATG4A-206ENST00000457035 KCNH8Q96L42 1107 aa16.06■□□□□ 0.16
ATG4A-206ENST00000457035 GLI2P10070 1586 aa16.05■□□□□ 0.16
ATG4A-206ENST00000457035 PLEKHD1A6NEE1 506 aa16.05■□□□□ 0.16
ATG4A-206ENST00000457035 PCF11O94913 1555 aaKnown RBP16.04■□□□□ 0.16
ATG4A-206ENST00000457035 CDK13Q14004 1512 aaKnown RBP16.04■□□□□ 0.16
ATG4A-206ENST00000457035 MAP3K4Q9Y6R4 1608 aa16.03■□□□□ 0.16
ATG4A-206ENST00000457035 FYCO1Q9BQS8 1478 aa16.02■□□□□ 0.15
ATG4A-206ENST00000457035 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
ATG4A-206ENST00000457035 CDK11AQ9UQ88 783 aaPredicted RBP15.99■□□□□ 0.15
ATG4A-206ENST00000457035 VPS8Q8N3P4 1428 aa15.98■□□□□ 0.15
ATG4A-206ENST00000457035 CCDC18Q5T9S5 1454 aa15.97■□□□□ 0.15
ATG4A-206ENST00000457035 KDM4FA0A1W2PPD8 638 aa15.96■□□□□ 0.15
ATG4A-206ENST00000457035 CFAP43Q8NDM7 1665 aa15.94■□□□□ 0.14
ATG4A-206ENST00000457035 CD109Q6YHK3 1445 aa15.94■□□□□ 0.14
ATG4A-206ENST00000457035 ABCA9Q8IUA7 1624 aa15.93■□□□□ 0.14
ATG4A-206ENST00000457035 TROQ12816 1431 aaPredicted RBP15.93■□□□□ 0.14
ATG4A-206ENST00000457035 TEX14Q8IWB6 1497 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms