RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 CARMIL1Q5VZK9 1371 aa29.56■■■□□ 2.32
USP39-208ENST00000455732 JPH4Q96JJ6 628 aa29.54■■■□□ 2.32
USP39-208ENST00000455732 PRG4Q92954 1404 aaPredicted RBP29.52■■■□□ 2.32
USP39-208ENST00000455732 KIAA0586Q9BVV6 1533 aa29.51■■■□□ 2.32
USP39-208ENST00000455732 RAPGEF2Q9Y4G8 1499 aa29.36■■■□□ 2.29
USP39-208ENST00000455732 IQGAP2Q13576 1575 aa29.31■■■□□ 2.28
USP39-208ENST00000455732 PRXQ9BXM0 1461 aa29.2■■■□□ 2.26
USP39-208ENST00000455732 EEA1Q15075 1411 aa29.18■■■□□ 2.26
USP39-208ENST00000455732 CTTNBP2Q8WZ74 1663 aa29.18■■■□□ 2.26
USP39-208ENST00000455732 ADCY10Q96PN6 1610 aa29.17■■■□□ 2.26
USP39-208ENST00000455732 CHIC1Q5VXU3 224 aa29.16■■■□□ 2.26
USP39-208ENST00000455732 CARMIL2Q6F5E8 1435 aa29.16■■■□□ 2.26
USP39-208ENST00000455732 UGGT2Q9NYU1 1516 aa29.15■■■□□ 2.26
USP39-208ENST00000455732 DISP1Q96F81 1524 aa29.14■■■□□ 2.25
USP39-208ENST00000455732 PTPRGP23470 1445 aa29.11■■■□□ 2.25
USP39-208ENST00000455732 TNIKQ9UKE5 1360 aa29.11■■■□□ 2.25
USP39-208ENST00000455732 CSRNP3Q8WYN3 585 aa29.08■■■□□ 2.25
USP39-208ENST00000455732 KIF13AQ9H1H9 1805 aa29.07■■■□□ 2.24
USP39-208ENST00000455732 KIAA0556O60303 1618 aa29.05■■■□□ 2.24
USP39-208ENST00000455732 MAPKBP1O60336 1514 aa29.04■■■□□ 2.24
USP39-208ENST00000455732 NPM1P06748 294 aaKnown RBP eCLIP29.01■■■□□ 2.23
USP39-208ENST00000455732 TTBK1Q5TCY1 1321 aaPredicted RBP28.98■■■□□ 2.23
USP39-208ENST00000455732 UHRF1BP1LA0JNW5 1464 aa28.95■■■□□ 2.22
USP39-208ENST00000455732 ABCC10Q5T3U5 1492 aa28.93■■■□□ 2.22
USP39-208ENST00000455732 ABCC2Q92887 1545 aa28.93■■■□□ 2.22
USP39-208ENST00000455732 UACAQ9BZF9 1416 aa28.92■■■□□ 2.22
USP39-208ENST00000455732 GOLGA3Q08378 1498 aa28.91■■■□□ 2.22
USP39-208ENST00000455732 DIP2BQ9P265 1576 aa28.9■■■□□ 2.22
USP39-208ENST00000455732 FAM9AQ8IZU1 332 aaPredicted RBP28.87■■■□□ 2.21
USP39-208ENST00000455732 KIF21BO75037 1637 aa28.85■■■□□ 2.21
USP39-208ENST00000455732 FAM69CQ0P6D2 419 aa28.83■■■□□ 2.21
USP39-208ENST00000455732 KDM5BQ9UGL1 1544 aa28.82■■■□□ 2.2
USP39-208ENST00000455732 ZCCHC11Q5TAX3 1644 aaKnown RBP28.77■■■□□ 2.2
USP39-208ENST00000455732 AEBP2Q6ZN18 517 aaPredicted RBP28.77■■■□□ 2.2
USP39-208ENST00000455732 PLB1Q6P1J6 1458 aa28.77■■■□□ 2.2
USP39-208ENST00000455732 ASXL2Q76L83 1435 aa28.77■■■□□ 2.2
USP39-208ENST00000455732 SAMD9Q5K651 1589 aa28.76■■■□□ 2.19
USP39-208ENST00000455732 ABCA8O94911 1581 aa28.75■■■□□ 2.19
USP39-208ENST00000455732 TSPOAP1O95153 1857 aa28.7■■■□□ 2.19
USP39-208ENST00000455732 GLI2P10070 1586 aa28.68■■■□□ 2.18
USP39-208ENST00000455732 P3H3Q8IVL6 736 aa28.66■■■□□ 2.18
USP39-208ENST00000455732 EPRSP07814 1512 aaKnown RBP28.61■■■□□ 2.17
USP39-208ENST00000455732 PPRC1Q5VV67 1664 aaKnown RBP28.59■■■□□ 2.17
USP39-208ENST00000455732 WDR7Q9Y4E6 1490 aa28.57■■■□□ 2.16
USP39-208ENST00000455732 MAP3K4Q9Y6R4 1608 aa28.55■■■□□ 2.16
USP39-208ENST00000455732 RAPGEF6Q8TEU7 1601 aa28.54■■■□□ 2.16
USP39-208ENST00000455732 EFCAB5A4FU69 1503 aa28.53■■■□□ 2.16
USP39-208ENST00000455732 RANGAP1P46060 587 aaPredicted RBP28.53■■■□□ 2.16
USP39-208ENST00000455732 FHOD3Q2V2M9 1422 aa28.52■■■□□ 2.16
USP39-208ENST00000455732 KDM6BO15054 1643 aa28.51■■■□□ 2.15
USP39-208ENST00000455732 UBTFP17480 764 aaKnown RBP28.51■■■□□ 2.15
USP39-208ENST00000455732 ATP10BO94823 1461 aa28.5■■■□□ 2.15
USP39-208ENST00000455732 EHMT2Q96KQ7 1210 aa28.46■■■□□ 2.15
USP39-208ENST00000455732 CFAP43Q8NDM7 1665 aa28.42■■■□□ 2.14
USP39-208ENST00000455732 NUP153P49790 1475 aaKnown RBP28.42■■■□□ 2.14
USP39-208ENST00000455732 ARID3CA6NKF2 412 aa28.41■■■□□ 2.14
USP39-208ENST00000455732 KCNH8Q96L42 1107 aa28.37■■■□□ 2.13
USP39-208ENST00000455732 TEX14Q8IWB6 1497 aa28.37■■■□□ 2.13
USP39-208ENST00000455732 ARHGAP35Q9NRY4 1499 aa28.35■■■□□ 2.13
USP39-208ENST00000455732 CD109Q6YHK3 1445 aa28.33■■■□□ 2.13
USP39-208ENST00000455732 MAGI3Q5TCQ9 1506 aa28.33■■■□□ 2.13
USP39-208ENST00000455732 COL17A1Q9UMD9 1497 aaPredicted RBP28.3■■■□□ 2.12
USP39-208ENST00000455732 ABCA9Q8IUA7 1624 aa28.29■■■□□ 2.12
USP39-208ENST00000455732 FMN1Q68DA7 1419 aa28.26■■■□□ 2.11
USP39-208ENST00000455732 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.25■■■□□ 2.11
USP39-208ENST00000455732 HNRNPUL2Q1KMD3 747 aaKnown RBP28.25■■■□□ 2.11
USP39-208ENST00000455732 HECW1Q76N89 1606 aa28.18■■■□□ 2.1
USP39-208ENST00000455732 CDK13Q14004 1512 aaKnown RBP28.18■■■□□ 2.1
USP39-208ENST00000455732 PLEKHD1A6NEE1 506 aa28.16■■■□□ 2.1
USP39-208ENST00000455732 CLIP1P30622 1438 aa28.13■■■□□ 2.09
USP39-208ENST00000455732 LRRIQ1Q96JM4 1722 aa28.12■■■□□ 2.09
USP39-208ENST00000455732 KDM4FA0A1W2PPD8 638 aa28.11■■■□□ 2.09
USP39-208ENST00000455732 ARAP3Q8WWN8 1544 aa28.1■■■□□ 2.09
USP39-208ENST00000455732 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.08■■■□□ 2.09
USP39-208ENST00000455732 PHLDB1Q86UU1 1377 aa28.06■■■□□ 2.08
USP39-208ENST00000455732 TTC37Q6PGP7 1564 aa28.05■■■□□ 2.08
USP39-208ENST00000455732 NEO1Q92859 1461 aa28.05■■■□□ 2.08
USP39-208ENST00000455732 ATP1B4Q9UN42 357 aaPredicted RBP28.05■■■□□ 2.08
USP39-208ENST00000455732 PCF11O94913 1555 aaKnown RBP28.03■■■□□ 2.08
USP39-208ENST00000455732 CASKIN1Q8WXD9 1431 aa28.02■■■□□ 2.08
USP39-208ENST00000455732 ADGRL1O94910 1474 aa28■■■□□ 2.07
USP39-208ENST00000455732 CEP162Q5TB80 1403 aa27.99■■■□□ 2.07
USP39-208ENST00000455732 FYCO1Q9BQS8 1478 aa27.96■■■□□ 2.07
USP39-208ENST00000455732 CDK11AQ9UQ88 783 aaPredicted RBP27.95■■■□□ 2.06
USP39-208ENST00000455732 CFAP74Q9C0B2 1584 aa27.94■■■□□ 2.06
USP39-208ENST00000455732 CCDC18Q5T9S5 1454 aa27.94■■■□□ 2.06
USP39-208ENST00000455732 KIF14Q15058 1648 aa27.93■■■□□ 2.06
USP39-208ENST00000455732 TROQ12816 1431 aaPredicted RBP27.92■■■□□ 2.06
USP39-208ENST00000455732 FRMPD1Q5SYB0 1578 aa27.92■■■□□ 2.06
USP39-208ENST00000455732 FANCAO15360 1455 aa27.92■■■□□ 2.06
USP39-208ENST00000455732 MYO5CQ9NQX4 1742 aa27.9■■■□□ 2.06
USP39-208ENST00000455732 LOC105371045A0A1W2PR82 267 aa27.9■■■□□ 2.06
USP39-208ENST00000455732 AKNAQ7Z591 1439 aa27.89■■■□□ 2.06
USP39-208ENST00000455732 PLCH2O75038 1416 aa27.88■■■□□ 2.05
USP39-208ENST00000455732 RAPGEF3O95398 923 aa27.88■■■□□ 2.05
USP39-208ENST00000455732 RICTORQ6R327 1708 aa27.88■■■□□ 2.05
USP39-208ENST00000455732 DENND4BO75064 1496 aaPredicted RBP27.83■■■□□ 2.04
USP39-208ENST00000455732 CDC42BPBQ9Y5S2 1711 aa27.78■■■□□ 2.04
USP39-208ENST00000455732 ZMYM4Q5VZL5 1548 aa27.75■■■□□ 2.03
USP39-208ENST00000455732 EFCAB2Q5VUJ9 269 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms