RNA–Protein interactions for RNA: ENST00000455383.5

MSH6-206, Transcript of mutS homolog 6, humanhuman

TSL 5

Gene MSH6, Length 578 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-206ENST00000455383 KIF13AQ9H1H9 1805 aa33.16■■■□□ 2.9
MSH6-206ENST00000455383 IGF1RP08069 1367 aa33.09■■■□□ 2.89
MSH6-206ENST00000455383 KIAA0586Q9BVV6 1533 aa33.05■■■□□ 2.88
MSH6-206ENST00000455383 ABCC10Q5T3U5 1492 aa33.03■■■□□ 2.88
MSH6-206ENST00000455383 MAPKBP1O60336 1514 aa33.02■■■□□ 2.88
MSH6-206ENST00000455383 KIF27Q86VH2 1401 aa33.02■■■□□ 2.88
MSH6-206ENST00000455383 ADCY10Q96PN6 1610 aa32.99■■■□□ 2.87
MSH6-206ENST00000455383 CUL7Q14999 1698 aa32.98■■■□□ 2.87
MSH6-206ENST00000455383 NPM1P06748 294 aaKnown RBP eCLIP32.97■■■□□ 2.87
MSH6-206ENST00000455383 FAM69CQ0P6D2 419 aa32.96■■■□□ 2.87
MSH6-206ENST00000455383 DIP2BQ9P265 1576 aa32.92■■■□□ 2.86
MSH6-206ENST00000455383 CARMIL1Q5VZK9 1371 aa32.83■■■□□ 2.85
MSH6-206ENST00000455383 PTPRGP23470 1445 aa32.77■■■□□ 2.84
MSH6-206ENST00000455383 TNIKQ9UKE5 1360 aa32.7■■■□□ 2.82
MSH6-206ENST00000455383 CARMIL2Q6F5E8 1435 aa32.68■■■□□ 2.82
MSH6-206ENST00000455383 KDM6BO15054 1643 aa32.66■■■□□ 2.82
MSH6-206ENST00000455383 ABCC2Q92887 1545 aa32.65■■■□□ 2.82
MSH6-206ENST00000455383 IQGAP2Q13576 1575 aa32.65■■■□□ 2.82
MSH6-206ENST00000455383 TSPOAP1O95153 1857 aa32.6■■■□□ 2.81
MSH6-206ENST00000455383 UHRF1BP1LA0JNW5 1464 aa32.6■■■□□ 2.81
MSH6-206ENST00000455383 DISP1Q96F81 1524 aa32.56■■■□□ 2.8
MSH6-206ENST00000455383 TTBK1Q5TCY1 1321 aaPredicted RBP32.56■■■□□ 2.8
MSH6-206ENST00000455383 PLB1Q6P1J6 1458 aa32.54■■■□□ 2.8
MSH6-206ENST00000455383 ASXL2Q76L83 1435 aa32.54■■■□□ 2.8
MSH6-206ENST00000455383 GLI2P10070 1586 aa32.53■■■□□ 2.8
MSH6-206ENST00000455383 UACAQ9BZF9 1416 aa32.52■■■□□ 2.8
MSH6-206ENST00000455383 KDM4FA0A1W2PPD8 638 aa32.5■■■□□ 2.79
MSH6-206ENST00000455383 RAPGEF2Q9Y4G8 1499 aa32.49■■■□□ 2.79
MSH6-206ENST00000455383 UGGT2Q9NYU1 1516 aa32.49■■■□□ 2.79
MSH6-206ENST00000455383 PPRC1Q5VV67 1664 aaKnown RBP32.46■■■□□ 2.79
MSH6-206ENST00000455383 KDM5BQ9UGL1 1544 aa32.44■■■□□ 2.78
MSH6-206ENST00000455383 KIAA0556O60303 1618 aa32.37■■■□□ 2.77
MSH6-206ENST00000455383 EPRSP07814 1512 aaKnown RBP32.36■■■□□ 2.77
MSH6-206ENST00000455383 MAP3K4Q9Y6R4 1608 aa32.32■■■□□ 2.76
MSH6-206ENST00000455383 ZCCHC11Q5TAX3 1644 aaKnown RBP32.31■■■□□ 2.76
MSH6-206ENST00000455383 COL17A1Q9UMD9 1497 aaPredicted RBP32.29■■■□□ 2.76
MSH6-206ENST00000455383 TEX14Q8IWB6 1497 aa32.23■■■□□ 2.75
MSH6-206ENST00000455383 CTTNBP2Q8WZ74 1663 aa32.2■■■□□ 2.74
MSH6-206ENST00000455383 WDR7Q9Y4E6 1490 aa32.18■■■□□ 2.74
MSH6-206ENST00000455383 GOLGA3Q08378 1498 aa32.16■■■□□ 2.74
MSH6-206ENST00000455383 ADGRL1O94910 1474 aa32.15■■■□□ 2.74
MSH6-206ENST00000455383 PRXQ9BXM0 1461 aa32.14■■■□□ 2.74
MSH6-206ENST00000455383 ABCA8O94911 1581 aa32.13■■■□□ 2.73
MSH6-206ENST00000455383 MAGI3Q5TCQ9 1506 aa32.05■■■□□ 2.72
MSH6-206ENST00000455383 CD109Q6YHK3 1445 aa32.01■■■□□ 2.72
MSH6-206ENST00000455383 CFAP43Q8NDM7 1665 aa32.01■■■□□ 2.71
MSH6-206ENST00000455383 KCNH8Q96L42 1107 aa31.95■■■□□ 2.71
MSH6-206ENST00000455383 ATP10BO94823 1461 aa31.85■■■□□ 2.69
MSH6-206ENST00000455383 ARAP3Q8WWN8 1544 aa31.81■■■□□ 2.68
MSH6-206ENST00000455383 P3H3Q8IVL6 736 aa31.79■■■□□ 2.68
MSH6-206ENST00000455383 HECW2Q9P2P5 1572 aa31.79■■■□□ 2.68
MSH6-206ENST00000455383 SAMD9Q5K651 1589 aa31.78■■■□□ 2.68
MSH6-206ENST00000455383 FAM9AQ8IZU1 332 aaPredicted RBP31.78■■■□□ 2.68
MSH6-206ENST00000455383 CSRNP3Q8WYN3 585 aa31.77■■■□□ 2.68
MSH6-206ENST00000455383 ARID3CA6NKF2 412 aa31.74■■■□□ 2.67
MSH6-206ENST00000455383 ILDR1Q86SU0 546 aaPredicted RBP31.74■■■□□ 2.67
MSH6-206ENST00000455383 ABCA9Q8IUA7 1624 aa31.74■■■□□ 2.67
MSH6-206ENST00000455383 PHLDB1Q86UU1 1377 aa31.71■■■□□ 2.67
MSH6-206ENST00000455383 KIF21BO75037 1637 aa31.69■■■□□ 2.66
MSH6-206ENST00000455383 RAPGEF6Q8TEU7 1601 aa31.68■■■□□ 2.66
MSH6-206ENST00000455383 NEO1Q92859 1461 aa31.61■■■□□ 2.65
MSH6-206ENST00000455383 NUP153P49790 1475 aaKnown RBP31.6■■■□□ 2.65
MSH6-206ENST00000455383 EEA1Q15075 1411 aa31.6■■■□□ 2.65
MSH6-206ENST00000455383 RAPGEF3O95398 923 aa31.55■■■□□ 2.64
MSH6-206ENST00000455383 ADAMTSL3P82987 1691 aa31.51■■■□□ 2.64
MSH6-206ENST00000455383 FHOD3Q2V2M9 1422 aa31.51■■■□□ 2.64
MSH6-206ENST00000455383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.51■■■□□ 2.63
MSH6-206ENST00000455383 HNRNPUL2Q1KMD3 747 aaKnown RBP31.51■■■□□ 2.63
MSH6-206ENST00000455383 FRMPD1Q5SYB0 1578 aa31.51■■■□□ 2.63
MSH6-206ENST00000455383 PTPRMP28827 1452 aa31.46■■■□□ 2.63
MSH6-206ENST00000455383 PLEKHD1A6NEE1 506 aa31.42■■■□□ 2.62
MSH6-206ENST00000455383 RANGAP1P46060 587 aaPredicted RBP31.42■■■□□ 2.62
MSH6-206ENST00000455383 EFCAB5A4FU69 1503 aa31.4■■■□□ 2.62
MSH6-206ENST00000455383 BCORL1Q5H9F3 1711 aa31.4■■■□□ 2.62
MSH6-206ENST00000455383 DENND4BO75064 1496 aaPredicted RBP31.36■■■□□ 2.61
MSH6-206ENST00000455383 AKNAQ7Z591 1439 aa31.36■■■□□ 2.61
MSH6-206ENST00000455383 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.35■■■□□ 2.61
MSH6-206ENST00000455383 ARHGEF40Q8TER5 1519 aa31.34■■■□□ 2.61
MSH6-206ENST00000455383 RICTORQ6R327 1708 aa31.34■■■□□ 2.61
MSH6-206ENST00000455383 FANCAO15360 1455 aa31.33■■■□□ 2.61
MSH6-206ENST00000455383 MADDQ8WXG6 1647 aa31.31■■■□□ 2.6
MSH6-206ENST00000455383 CFAP74Q9C0B2 1584 aa31.3■■■□□ 2.6
MSH6-206ENST00000455383 ARID4BQ4LE39 1312 aaPredicted RBP31.29■■■□□ 2.6
MSH6-206ENST00000455383 TTC37Q6PGP7 1564 aa31.29■■■□□ 2.6
MSH6-206ENST00000455383 ZMYM4Q5VZL5 1548 aa31.26■■■□□ 2.59
MSH6-206ENST00000455383 CDK13Q14004 1512 aaKnown RBP31.22■■■□□ 2.59
MSH6-206ENST00000455383 PCF11O94913 1555 aaKnown RBP31.22■■■□□ 2.59
MSH6-206ENST00000455383 LMTK3Q96Q04 1460 aa31.21■■■□□ 2.59
MSH6-206ENST00000455383 MAGI2Q86UL8 1455 aa31.19■■■□□ 2.58
MSH6-206ENST00000455383 PLCH2O75038 1416 aa31.17■■■□□ 2.58
MSH6-206ENST00000455383 ZFYVE16Q7Z3T8 1539 aa31.17■■■□□ 2.58
MSH6-206ENST00000455383 YEATS2Q9ULM3 1422 aa31.16■■■□□ 2.58
MSH6-206ENST00000455383 RIMS1Q86UR5 1692 aaKnown RBP31.16■■■□□ 2.58
MSH6-206ENST00000455383 FBXO41Q8TF61 875 aa31.16■■■□□ 2.58
MSH6-206ENST00000455383 SIGLEC1Q9BZZ2 1709 aa31.14■■■□□ 2.58
MSH6-206ENST00000455383 POGZQ7Z3K3 1410 aa31.14■■■□□ 2.58
MSH6-206ENST00000455383 HECW1Q76N89 1606 aa31.13■■■□□ 2.57
MSH6-206ENST00000455383 FMN1Q68DA7 1419 aa31.12■■■□□ 2.57
MSH6-206ENST00000455383 SCAPERQ9BY12 1400 aa31.11■■■□□ 2.57
MSH6-206ENST00000455383 ARHGAP35Q9NRY4 1499 aa31.09■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms