RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 RUSC2Q8N2Y8 1516 aa33.76■■■■□ 3
COL9A3-202ENST00000452372 CUL7Q14999 1698 aa33.68■■■□□ 2.98
COL9A3-202ENST00000452372 KIAA0586Q9BVV6 1533 aa33.66■■■□□ 2.98
COL9A3-202ENST00000452372 CARMIL1Q5VZK9 1371 aa33.61■■■□□ 2.97
COL9A3-202ENST00000452372 CHIC1Q5VXU3 224 aa33.61■■■□□ 2.97
COL9A3-202ENST00000452372 KIF13AQ9H1H9 1805 aa33.45■■■□□ 2.95
COL9A3-202ENST00000452372 ADCY10Q96PN6 1610 aa33.42■■■□□ 2.94
COL9A3-202ENST00000452372 RAPGEF2Q9Y4G8 1499 aa33.41■■■□□ 2.94
COL9A3-202ENST00000452372 NPM1P06748 294 aaKnown RBP eCLIP33.37■■■□□ 2.93
COL9A3-202ENST00000452372 EEA1Q15075 1411 aa33.36■■■□□ 2.93
COL9A3-202ENST00000452372 CSRNP3Q8WYN3 585 aa33.34■■■□□ 2.93
COL9A3-202ENST00000452372 PTPRGP23470 1445 aa33.33■■■□□ 2.93
COL9A3-202ENST00000452372 MAPKBP1O60336 1514 aa33.33■■■□□ 2.93
COL9A3-202ENST00000452372 PRXQ9BXM0 1461 aa33.32■■■□□ 2.92
COL9A3-202ENST00000452372 ABCC10Q5T3U5 1492 aa33.31■■■□□ 2.92
COL9A3-202ENST00000452372 IQGAP2Q13576 1575 aa33.3■■■□□ 2.92
COL9A3-202ENST00000452372 FAM69CQ0P6D2 419 aa33.29■■■□□ 2.92
COL9A3-202ENST00000452372 TNIKQ9UKE5 1360 aa33.26■■■□□ 2.92
COL9A3-202ENST00000452372 CARMIL2Q6F5E8 1435 aa33.26■■■□□ 2.91
COL9A3-202ENST00000452372 TTBK1Q5TCY1 1321 aaPredicted RBP33.23■■■□□ 2.91
COL9A3-202ENST00000452372 DISP1Q96F81 1524 aa33.23■■■□□ 2.91
COL9A3-202ENST00000452372 FAM9AQ8IZU1 332 aaPredicted RBP33.21■■■□□ 2.91
COL9A3-202ENST00000452372 DIP2BQ9P265 1576 aa33.21■■■□□ 2.91
COL9A3-202ENST00000452372 UGGT2Q9NYU1 1516 aa33.14■■■□□ 2.9
COL9A3-202ENST00000452372 ABCC2Q92887 1545 aa33.11■■■□□ 2.89
COL9A3-202ENST00000452372 UHRF1BP1LA0JNW5 1464 aa33.09■■■□□ 2.89
COL9A3-202ENST00000452372 UACAQ9BZF9 1416 aa33.07■■■□□ 2.88
COL9A3-202ENST00000452372 CTTNBP2Q8WZ74 1663 aa33.06■■■□□ 2.88
COL9A3-202ENST00000452372 KIAA0556O60303 1618 aa33.01■■■□□ 2.87
COL9A3-202ENST00000452372 ASXL2Q76L83 1435 aa33.01■■■□□ 2.87
COL9A3-202ENST00000452372 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
COL9A3-202ENST00000452372 TSPOAP1O95153 1857 aa32.99■■■□□ 2.87
COL9A3-202ENST00000452372 KIF21BO75037 1637 aa32.99■■■□□ 2.87
COL9A3-202ENST00000452372 PLB1Q6P1J6 1458 aa32.95■■■□□ 2.87
COL9A3-202ENST00000452372 KDM5BQ9UGL1 1544 aa32.95■■■□□ 2.87
COL9A3-202ENST00000452372 GLI2P10070 1586 aa32.89■■■□□ 2.86
COL9A3-202ENST00000452372 KDM6BO15054 1643 aa32.84■■■□□ 2.85
COL9A3-202ENST00000452372 ZCCHC11Q5TAX3 1644 aaKnown RBP32.84■■■□□ 2.85
COL9A3-202ENST00000452372 PPRC1Q5VV67 1664 aaKnown RBP32.83■■■□□ 2.85
COL9A3-202ENST00000452372 GOLGA3Q08378 1498 aa32.82■■■□□ 2.84
COL9A3-202ENST00000452372 EPRSP07814 1512 aaKnown RBP32.8■■■□□ 2.84
COL9A3-202ENST00000452372 EHMT2Q96KQ7 1210 aa32.75■■■□□ 2.83
COL9A3-202ENST00000452372 ABCA8O94911 1581 aa32.75■■■□□ 2.83
COL9A3-202ENST00000452372 UBTFP17480 764 aaKnown RBP32.74■■■□□ 2.83
COL9A3-202ENST00000452372 MAP3K4Q9Y6R4 1608 aa32.7■■■□□ 2.83
COL9A3-202ENST00000452372 COL17A1Q9UMD9 1497 aaPredicted RBP32.67■■■□□ 2.82
COL9A3-202ENST00000452372 WDR7Q9Y4E6 1490 aa32.67■■■□□ 2.82
COL9A3-202ENST00000452372 P3H3Q8IVL6 736 aa32.66■■■□□ 2.82
COL9A3-202ENST00000452372 SAMD9Q5K651 1589 aa32.66■■■□□ 2.82
COL9A3-202ENST00000452372 KDM4FA0A1W2PPD8 638 aa32.63■■■□□ 2.81
COL9A3-202ENST00000452372 RANGAP1P46060 587 aaPredicted RBP32.62■■■□□ 2.81
COL9A3-202ENST00000452372 KCNH8Q96L42 1107 aa32.57■■■□□ 2.8
COL9A3-202ENST00000452372 TEX14Q8IWB6 1497 aa32.53■■■□□ 2.8
COL9A3-202ENST00000452372 EFCAB5A4FU69 1503 aa32.52■■■□□ 2.8
COL9A3-202ENST00000452372 ATP10BO94823 1461 aa32.52■■■□□ 2.8
COL9A3-202ENST00000452372 ARID3CA6NKF2 412 aa32.49■■■□□ 2.79
COL9A3-202ENST00000452372 CD109Q6YHK3 1445 aa32.48■■■□□ 2.79
COL9A3-202ENST00000452372 MAGI3Q5TCQ9 1506 aa32.46■■■□□ 2.79
COL9A3-202ENST00000452372 FHOD3Q2V2M9 1422 aa32.45■■■□□ 2.79
COL9A3-202ENST00000452372 CFAP43Q8NDM7 1665 aa32.44■■■□□ 2.78
COL9A3-202ENST00000452372 ARHGAP35Q9NRY4 1499 aa32.39■■■□□ 2.78
COL9A3-202ENST00000452372 RAPGEF6Q8TEU7 1601 aa32.37■■■□□ 2.77
COL9A3-202ENST00000452372 NUP153P49790 1475 aaKnown RBP32.31■■■□□ 2.76
COL9A3-202ENST00000452372 ADGRL1O94910 1474 aa32.27■■■□□ 2.76
COL9A3-202ENST00000452372 ABCA9Q8IUA7 1624 aa32.26■■■□□ 2.75
COL9A3-202ENST00000452372 FMN1Q68DA7 1419 aa32.24■■■□□ 2.75
COL9A3-202ENST00000452372 LOC105371045A0A1W2PR82 267 aa32.23■■■□□ 2.75
COL9A3-202ENST00000452372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.22■■■□□ 2.75
COL9A3-202ENST00000452372 HNRNPUL2Q1KMD3 747 aaKnown RBP32.22■■■□□ 2.75
COL9A3-202ENST00000452372 CLIP1P30622 1438 aa32.22■■■□□ 2.75
COL9A3-202ENST00000452372 ARAP3Q8WWN8 1544 aa32.21■■■□□ 2.75
COL9A3-202ENST00000452372 PHLDB1Q86UU1 1377 aa32.13■■■□□ 2.73
COL9A3-202ENST00000452372 PLEKHD1A6NEE1 506 aa32.12■■■□□ 2.73
COL9A3-202ENST00000452372 CEP162Q5TB80 1403 aa32.09■■■□□ 2.73
COL9A3-202ENST00000452372 RAPGEF3O95398 923 aa32.07■■■□□ 2.72
COL9A3-202ENST00000452372 NEO1Q92859 1461 aa32.07■■■□□ 2.72
COL9A3-202ENST00000452372 HECW1Q76N89 1606 aa32.05■■■□□ 2.72
COL9A3-202ENST00000452372 ATP1B4Q9UN42 357 aaPredicted RBP32.05■■■□□ 2.72
COL9A3-202ENST00000452372 CASKIN1Q8WXD9 1431 aa32■■■□□ 2.71
COL9A3-202ENST00000452372 CDK13Q14004 1512 aaKnown RBP31.99■■■□□ 2.71
COL9A3-202ENST00000452372 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.98■■■□□ 2.71
COL9A3-202ENST00000452372 PCF11O94913 1555 aaKnown RBP31.95■■■□□ 2.71
COL9A3-202ENST00000452372 FRMPD1Q5SYB0 1578 aa31.94■■■□□ 2.7
COL9A3-202ENST00000452372 TTC37Q6PGP7 1564 aa31.91■■■□□ 2.7
COL9A3-202ENST00000452372 FYCO1Q9BQS8 1478 aa31.91■■■□□ 2.7
COL9A3-202ENST00000452372 AKNAQ7Z591 1439 aa31.9■■■□□ 2.7
COL9A3-202ENST00000452372 LRRIQ1Q96JM4 1722 aa31.89■■■□□ 2.7
COL9A3-202ENST00000452372 CDK11AQ9UQ88 783 aaPredicted RBP31.89■■■□□ 2.7
COL9A3-202ENST00000452372 FANCAO15360 1455 aa31.87■■■□□ 2.69
COL9A3-202ENST00000452372 CCDC18Q5T9S5 1454 aa31.84■■■□□ 2.69
COL9A3-202ENST00000452372 DENND4BO75064 1496 aaPredicted RBP31.84■■■□□ 2.69
COL9A3-202ENST00000452372 RICTORQ6R327 1708 aa31.83■■■□□ 2.69
COL9A3-202ENST00000452372 PLCH2O75038 1416 aa31.8■■■□□ 2.68
COL9A3-202ENST00000452372 ADAMTSL3P82987 1691 aa31.79■■■□□ 2.68
COL9A3-202ENST00000452372 HECW2Q9P2P5 1572 aa31.77■■■□□ 2.68
COL9A3-202ENST00000452372 CFAP74Q9C0B2 1584 aa31.77■■■□□ 2.68
COL9A3-202ENST00000452372 TROQ12816 1431 aaPredicted RBP31.75■■■□□ 2.67
COL9A3-202ENST00000452372 BCORL1Q5H9F3 1711 aa31.7■■■□□ 2.67
COL9A3-202ENST00000452372 VPS8Q8N3P4 1428 aa31.7■■■□□ 2.67
COL9A3-202ENST00000452372 KIF14Q15058 1648 aa31.7■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms