RNA–Protein interactions for RNA: ENST00000447601.6

FAM3A-215, Transcript of family with sequence similarity 3 member A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FAM3A, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-215ENST00000447601 IFT140Q96RY7 1462 aa29.61■■■□□ 2.33
FAM3A-215ENST00000447601 MAP3K1Q13233 1512 aa29.6■■■□□ 2.33
FAM3A-215ENST00000447601 KANK4Q5T7N3 995 aaPredicted RBP29.6■■■□□ 2.33
FAM3A-215ENST00000447601 ERCC6Q03468 1493 aa29.57■■■□□ 2.32
FAM3A-215ENST00000447601 AQRO60306 1485 aaKnown RBP eCLIP29.53■■■□□ 2.324e-7■■■□□ 18.5
FAM3A-215ENST00000447601 PBRM1Q86U86 1689 aa29.53■■■□□ 2.32
FAM3A-215ENST00000447601 GRIN2BQ13224 1484 aa29.52■■■□□ 2.32
FAM3A-215ENST00000447601 TIAM1Q13009 1591 aa29.51■■■□□ 2.31
FAM3A-215ENST00000447601 FHOD3Q2V2M9 1422 aa29.51■■■□□ 2.31
FAM3A-215ENST00000447601 P3H3Q8IVL6 736 aa29.49■■■□□ 2.31
FAM3A-215ENST00000447601 HNRNPUL2Q1KMD3 747 aaKnown RBP29.48■■■□□ 2.31
FAM3A-215ENST00000447601 ADAMTS12P58397 1594 aa29.47■■■□□ 2.31
FAM3A-215ENST00000447601 PCF11O94913 1555 aaKnown RBP29.45■■■□□ 2.31
FAM3A-215ENST00000447601 RRBP1Q9P2E9 1410 aaKnown RBP29.45■■■□□ 2.3
FAM3A-215ENST00000447601 FYCO1Q9BQS8 1478 aa29.45■■■□□ 2.3
FAM3A-215ENST00000447601 FMN1Q68DA7 1419 aa29.44■■■□□ 2.3
FAM3A-215ENST00000447601 CASKIN1Q8WXD9 1431 aa29.42■■■□□ 2.3
FAM3A-215ENST00000447601 SAMD9Q5K651 1589 aa29.42■■■□□ 2.3
FAM3A-215ENST00000447601 ZNF608Q9ULD9 1512 aaPredicted RBP29.42■■■□□ 2.3
FAM3A-215ENST00000447601 THOC2Q8NI27 1593 aaKnown RBP29.41■■■□□ 2.3
FAM3A-215ENST00000447601 LRRC9Q6ZRR7 1453 aa29.39■■■□□ 2.3
FAM3A-215ENST00000447601 CFAP43Q8NDM7 1665 aa29.37■■■□□ 2.29
FAM3A-215ENST00000447601 CCNB3Q8WWL7 1395 aa29.33■■■□□ 2.29
FAM3A-215ENST00000447601 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
FAM3A-215ENST00000447601 SNAPC4Q5SXM2 1469 aa29.3■■■□□ 2.28
FAM3A-215ENST00000447601 ATP1B4Q9UN42 357 aaPredicted RBP29.29■■■□□ 2.28
FAM3A-215ENST00000447601 IQGAP2Q13576 1575 aa29.28■■■□□ 2.28
FAM3A-215ENST00000447601 MAGI1Q96QZ7 1491 aaPredicted RBP29.19■■■□□ 2.26
FAM3A-215ENST00000447601 PHLDB1Q86UU1 1377 aa29.17■■■□□ 2.26
FAM3A-215ENST00000447601 GRIN2AQ12879 1464 aa29.16■■■□□ 2.26
FAM3A-215ENST00000447601 KIAA0586Q9BVV6 1533 aa29.15■■■□□ 2.26
FAM3A-215ENST00000447601 UGGT2Q9NYU1 1516 aa29.15■■■□□ 2.26
FAM3A-215ENST00000447601 SYNJ2O15056 1496 aa29.09■■■□□ 2.25
FAM3A-215ENST00000447601 MTUS2Q5JR59 1369 aa29.07■■■□□ 2.24
FAM3A-215ENST00000447601 CCDC18Q5T9S5 1454 aa29.05■■■□□ 2.24
FAM3A-215ENST00000447601 CHMP7Q8WUX9 453 aaPredicted RBP29.03■■■□□ 2.24
FAM3A-215ENST00000447601 CLSPNQ9HAW4 1339 aa29.02■■■□□ 2.24
FAM3A-215ENST00000447601 HECW1Q76N89 1606 aa29.02■■■□□ 2.24
FAM3A-215ENST00000447601 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.01■■■□□ 2.23
FAM3A-215ENST00000447601 ITGAEP38570 1179 aa28.99■■■□□ 2.23
FAM3A-215ENST00000447601 EHBP1L1Q8N3D4 1523 aa28.98■■■□□ 2.23
FAM3A-215ENST00000447601 LRRIQ1Q96JM4 1722 aa28.98■■■□□ 2.23
FAM3A-215ENST00000447601 DHX57Q6P158 1386 aaKnown RBP28.98■■■□□ 2.23
FAM3A-215ENST00000447601 KIAA0556O60303 1618 aa28.97■■■□□ 2.23
FAM3A-215ENST00000447601 DISP1Q96F81 1524 aa28.97■■■□□ 2.23
FAM3A-215ENST00000447601 FAM50AQ14320 339 aaKnown RBP28.97■■■□□ 2.23
FAM3A-215ENST00000447601 CEP170Q5SW79 1584 aa28.93■■■□□ 2.22
FAM3A-215ENST00000447601 FGD6Q6ZV73 1430 aa28.92■■■□□ 2.22
FAM3A-215ENST00000447601 NUP160Q12769 1436 aa28.92■■■□□ 2.22
FAM3A-215ENST00000447601 NCOA2Q15596 1464 aa28.91■■■□□ 2.22
FAM3A-215ENST00000447601 EPRSP07814 1512 aaKnown RBP28.91■■■□□ 2.22
FAM3A-215ENST00000447601 FBLN2P98095 1184 aa28.89■■■□□ 2.22
FAM3A-215ENST00000447601 SUPT6HQ7KZ85 1726 aaKnown RBP28.89■■■□□ 2.21
FAM3A-215ENST00000447601 MYOM3Q5VTT5 1437 aa28.86■■■□□ 2.21
FAM3A-215ENST00000447601 SETD5Q9C0A6 1442 aa28.86■■■□□ 2.21
FAM3A-215ENST00000447601 RAB3GAP2Q9H2M9 1393 aa28.85■■■□□ 2.21
FAM3A-215ENST00000447601 ARHGEF11O15085 1522 aa28.83■■■□□ 2.21
FAM3A-215ENST00000447601 MAGI3Q5TCQ9 1506 aa28.83■■■□□ 2.21
FAM3A-215ENST00000447601 CARMIL2Q6F5E8 1435 aa28.79■■■□□ 2.2
FAM3A-215ENST00000447601 CDK13Q14004 1512 aaKnown RBP28.79■■■□□ 2.2
FAM3A-215ENST00000447601 RAPGEF6Q8TEU7 1601 aa28.76■■■□□ 2.19
FAM3A-215ENST00000447601 JPH4Q96JJ6 628 aa28.75■■■□□ 2.19
FAM3A-215ENST00000447601 NUP153P49790 1475 aaKnown RBP28.73■■■□□ 2.19
FAM3A-215ENST00000447601 PTPN23Q9H3S7 1636 aa28.67■■■□□ 2.18
FAM3A-215ENST00000447601 ZNF316A6NFI3 1004 aaPredicted RBP28.66■■■□□ 2.18
FAM3A-215ENST00000447601 TCOF1Q13428 1488 aaKnown RBP28.66■■■□□ 2.18
FAM3A-215ENST00000447601 CDK11AQ9UQ88 783 aaPredicted RBP28.66■■■□□ 2.18
FAM3A-215ENST00000447601 MIA2Q96PC5 1412 aa28.65■■■□□ 2.18
FAM3A-215ENST00000447601 ARID3CA6NKF2 412 aa28.65■■■□□ 2.18
FAM3A-215ENST00000447601 HFM1A2PYH4 1435 aa28.61■■■□□ 2.17
FAM3A-215ENST00000447601 PLB1Q6P1J6 1458 aa28.61■■■□□ 2.17
FAM3A-215ENST00000447601 PTPRKQ15262 1439 aa28.6■■■□□ 2.17
FAM3A-215ENST00000447601 MAPKBP1O60336 1514 aa28.59■■■□□ 2.17
FAM3A-215ENST00000447601 DIEXFQ68CQ4 756 aaKnown RBP28.56■■■□□ 2.16
FAM3A-215ENST00000447601 TROQ12816 1431 aaPredicted RBP28.54■■■□□ 2.16
FAM3A-215ENST00000447601 ABCA8O94911 1581 aa28.5■■■□□ 2.15
FAM3A-215ENST00000447601 PRG4Q92954 1404 aaPredicted RBP28.5■■■□□ 2.15
FAM3A-215ENST00000447601 NAIPQ13075 1403 aa28.5■■■□□ 2.15
FAM3A-215ENST00000447601 CHD1O14646 1710 aa28.49■■■□□ 2.15
FAM3A-215ENST00000447601 AKNAQ7Z591 1439 aa28.47■■■□□ 2.15
FAM3A-215ENST00000447601 UACAQ9BZF9 1416 aa28.43■■■□□ 2.14
FAM3A-215ENST00000447601 PTPRGP23470 1445 aa28.42■■■□□ 2.14
FAM3A-215ENST00000447601 ADCY10Q96PN6 1610 aa28.41■■■□□ 2.14
FAM3A-215ENST00000447601 SHROOM2Q13796 1616 aa28.38■■■□□ 2.13
FAM3A-215ENST00000447601 ATP10BO94823 1461 aa28.37■■■□□ 2.13
FAM3A-215ENST00000447601 TIMELESSQ9UNS1 1208 aa28.36■■■□□ 2.13
FAM3A-215ENST00000447601 PLEKHD1A6NEE1 506 aa28.35■■■□□ 2.13
FAM3A-215ENST00000447601 GCC2Q8IWJ2 1684 aa28.35■■■□□ 2.13
FAM3A-215ENST00000447601 DAPK1P53355 1430 aa28.34■■■□□ 2.13
FAM3A-215ENST00000447601 CHIC2Q9UKJ5 165 aa28.34■■■□□ 2.13
FAM3A-215ENST00000447601 ITSN2Q9NZM3 1697 aa28.33■■■□□ 2.13
FAM3A-215ENST00000447601 ROCK1Q13464 1354 aa28.32■■■□□ 2.12
FAM3A-215ENST00000447601 RRP7BPQ9NSQ0 103 aa28.32■■■□□ 2.12
FAM3A-215ENST00000447601 GPATCH8Q9UKJ3 1502 aaKnown RBP28.32■■■□□ 2.12
FAM3A-215ENST00000447601 DNMT1P26358 1616 aaKnown RBP28.31■■■□□ 2.12
FAM3A-215ENST00000447601 KIF14Q15058 1648 aa28.31■■■□□ 2.12
FAM3A-215ENST00000447601 CFDP1Q9UEE9 299 aaPredicted RBP28.3■■■□□ 2.12
FAM3A-215ENST00000447601 ABCC5O15440 1437 aa28.29■■■□□ 2.12
FAM3A-215ENST00000447601 SIN3AQ96ST3 1273 aa28.28■■■□□ 2.12
FAM3A-215ENST00000447601 ZNF644Q9H582 1327 aaPredicted RBP28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms