RNA–Protein interactions for RNA: ENST00000446231.6

SMG1-202, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG1, Length 16,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-202ENST00000446231 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.39□□□□□ -0.75
SMG1-202ENST00000446231 USP35Q9P2H5 1018 aa10.39□□□□□ -0.75
SMG1-202ENST00000446231 SALL2Q9Y467 1007 aaPredicted RBP10.38□□□□□ -0.75
SMG1-202ENST00000446231 PNNQ9H307 717 aaKnown RBP10.38□□□□□ -0.75
SMG1-202ENST00000446231 SLC4A1APQ9BWU0 796 aaKnown RBP10.37□□□□□ -0.75
SMG1-202ENST00000446231 NCLP19338 710 aaKnown RBP10.37□□□□□ -0.75
SMG1-202ENST00000446231 KCNH8Q96L42 1107 aa10.36□□□□□ -0.75
SMG1-202ENST00000446231 TCERG1O14776 1098 aaKnown RBP10.35□□□□□ -0.75
SMG1-202ENST00000446231 EIF4G2P78344 907 aaKnown RBP eCLIP10.34□□□□□ -0.75
SMG1-202ENST00000446231 VSIG10Q8N0Z9 540 aa10.34□□□□□ -0.75
SMG1-202ENST00000446231 HSP90AA2PQ14568 343 aaPredicted RBP10.33□□□□□ -0.76
SMG1-202ENST00000446231 CEP162Q5TB80 1403 aa10.33□□□□□ -0.76
SMG1-202ENST00000446231 CLIP1P30622 1438 aa10.33□□□□□ -0.76
SMG1-202ENST00000446231 SENP3-EIF4A1A0A087X0R7 540 aa10.32□□□□□ -0.76
SMG1-202ENST00000446231 TNIKQ9UKE5 1360 aa10.31□□□□□ -0.76
SMG1-202ENST00000446231 SIN3AQ96ST3 1273 aa10.3□□□□□ -0.76
SMG1-202ENST00000446231 P3H3Q8IVL6 736 aa10.29□□□□□ -0.76
SMG1-202ENST00000446231 PKNOX2Q96KN3 472 aa10.29□□□□□ -0.76
SMG1-202ENST00000446231 TIMELESSQ9UNS1 1208 aa10.29□□□□□ -0.76
SMG1-202ENST00000446231 GOLGA6L22H0YM25 854 aa10.28□□□□□ -0.76
SMG1-202ENST00000446231 PTMAP06454 111 aaKnown RBP10.28□□□□□ -0.76
SMG1-202ENST00000446231 ARID4BQ4LE39 1312 aaPredicted RBP10.27□□□□□ -0.76
SMG1-202ENST00000446231 GSE1Q14687 1217 aa10.26□□□□□ -0.77
SMG1-202ENST00000446231 BRPF3Q9ULD4 1205 aa10.26□□□□□ -0.77
SMG1-202ENST00000446231 IL27Q8NEV9 243 aa10.25□□□□□ -0.77
SMG1-202ENST00000446231 RGS3P49796 1198 aa10.25□□□□□ -0.77
SMG1-202ENST00000446231 GOLGA6L3A6NEY3 463 aa10.23□□□□□ -0.77
SMG1-202ENST00000446231 MSH5O43196 834 aa10.21□□□□□ -0.77
SMG1-202ENST00000446231 RCAN3Q9UKA8 241 aa10.21□□□□□ -0.77
SMG1-202ENST00000446231 WDR43Q15061 677 aaKnown RBP eCLIP10.2□□□□□ -0.782e-6■■■■■ 28
SMG1-202ENST00000446231 CDK11BP21127 795 aaKnown RBP10.19□□□□□ -0.78
SMG1-202ENST00000446231 CHIC2Q9UKJ5 165 aa10.19□□□□□ -0.78
SMG1-202ENST00000446231 PDE4AP27815 886 aa10.18□□□□□ -0.78
SMG1-202ENST00000446231 UBE2Q2Q8WVN8 375 aa10.18□□□□□ -0.78
SMG1-202ENST00000446231 GZF1Q9H116 711 aaPredicted RBP10.17□□□□□ -0.78
SMG1-202ENST00000446231 MS4A1P11836 297 aa10.17□□□□□ -0.78
SMG1-202ENST00000446231 ZCCHC6Q5VYS8 1495 aaKnown RBP10.16□□□□□ -0.78
SMG1-202ENST00000446231 RSF1Q96T23 1441 aaPredicted RBP10.16□□□□□ -0.78
SMG1-202ENST00000446231 SPRYD3Q8NCJ5 442 aa10.16□□□□□ -0.78
SMG1-202ENST00000446231 PAK3O75914 559 aaPredicted RBP10.16□□□□□ -0.78
SMG1-202ENST00000446231 DNTTIP2Q5QJE6 756 aaKnown RBP10.16□□□□□ -0.78
SMG1-202ENST00000446231 RRP7BPQ9NSQ0 103 aa10.16□□□□□ -0.78
SMG1-202ENST00000446231 NUDCQ9Y266 331 aa10.16□□□□□ -0.78
SMG1-202ENST00000446231 PPP1R15AO75807 674 aaPredicted RBP10.15□□□□□ -0.78
SMG1-202ENST00000446231 EEA1Q15075 1411 aa10.15□□□□□ -0.79
SMG1-202ENST00000446231 KDM2AQ9Y2K7 1162 aa10.15□□□□□ -0.79
SMG1-202ENST00000446231 HSCBQ8IWL3 235 aa10.14□□□□□ -0.79
SMG1-202ENST00000446231 HSPA5P11021 654 aaKnown RBP10.14□□□□□ -0.79
SMG1-202ENST00000446231 ARID3CA6NKF2 412 aa10.13□□□□□ -0.79
SMG1-202ENST00000446231 SLKQ9H2G2 1235 aaPredicted RBP10.13□□□□□ -0.79
SMG1-202ENST00000446231 PABPN1Q86U42 306 aaKnown RBP eCLIP10.13□□□□□ -0.797e-7■□□□□ 10.4
SMG1-202ENST00000446231 MSNP26038 577 aaKnown RBP10.13□□□□□ -0.79
SMG1-202ENST00000446231 SLC4A3P48751 1232 aa10.13□□□□□ -0.79
SMG1-202ENST00000446231 FRAT1Q92837 279 aaPredicted RBP10.13□□□□□ -0.79
SMG1-202ENST00000446231 GBP4Q96PP9 640 aa10.13□□□□□ -0.79
SMG1-202ENST00000446231 PODXL2Q9NZ53 605 aa10.13□□□□□ -0.79
SMG1-202ENST00000446231 CCNB3Q8WWL7 1395 aa10.12□□□□□ -0.79
SMG1-202ENST00000446231 HSP90AB1P08238 724 aaKnown RBP10.12□□□□□ -0.79
SMG1-202ENST00000446231 ARID3AQ99856 593 aa10.12□□□□□ -0.79
SMG1-202ENST00000446231 FAM43AQ8N2R8 423 aa10.12□□□□□ -0.79
SMG1-202ENST00000446231 KANK4Q5T7N3 995 aaPredicted RBP10.1□□□□□ -0.79
SMG1-202ENST00000446231 CHAF1AQ13111 956 aaPredicted RBP10.1□□□□□ -0.79
SMG1-202ENST00000446231 A0A0U1RQG5 324 aaPredicted RBP10.09□□□□□ -0.79
SMG1-202ENST00000446231 MYH16Q9H6N6 1097 aa10.09□□□□□ -0.79
SMG1-202ENST00000446231 GOLGA3Q08378 1498 aa10.09□□□□□ -0.79
SMG1-202ENST00000446231 ZBED9Q6R2W3 1325 aa10.08□□□□□ -0.8
SMG1-202ENST00000446231 PTMSP20962 102 aa10.08□□□□□ -0.8
SMG1-202ENST00000446231 RRP9O43818 475 aaKnown RBP10.08□□□□□ -0.8
SMG1-202ENST00000446231 KIAA2012Q0VF49 1180 aa10.07□□□□□ -0.8
SMG1-202ENST00000446231 RALBP1Q15311 655 aa10.07□□□□□ -0.8
SMG1-202ENST00000446231 NFKBIBQ15653 356 aa10.07□□□□□ -0.8
SMG1-202ENST00000446231 FTSJ3Q8IY81 847 aaKnown RBP10.07□□□□□ -0.8
SMG1-202ENST00000446231 SETD5Q9C0A6 1442 aa10.06□□□□□ -0.8
SMG1-202ENST00000446231 ZNF777Q9ULD5 760 aaPredicted RBP10.06□□□□□ -0.8
SMG1-202ENST00000446231 PDE3BQ13370 1112 aa10.06□□□□□ -0.8
SMG1-202ENST00000446231 AMER1Q5JTC6 1135 aaPredicted RBP10.06□□□□□ -0.8
SMG1-202ENST00000446231 FAM13BQ9NYF5 915 aa10.05□□□□□ -0.8
SMG1-202ENST00000446231 DHX57Q6P158 1386 aaKnown RBP10.04□□□□□ -0.8
SMG1-202ENST00000446231 KNSTRNQ9Y448 316 aa10.04□□□□□ -0.8
SMG1-202ENST00000446231 WRNQ14191 1432 aaPredicted RBP eCLIP10.04□□□□□ -0.8
SMG1-202ENST00000446231 TPM2P07951 284 aa10.03□□□□□ -0.8
SMG1-202ENST00000446231 DDX11L8A8MPP1 907 aa10.03□□□□□ -0.8
SMG1-202ENST00000446231 FAM161AQ3B820 660 aa10.03□□□□□ -0.8
SMG1-202ENST00000446231 CASC1Q6TDU7 716 aa10.02□□□□□ -0.81
SMG1-202ENST00000446231 RAB3GAP2Q9H2M9 1393 aa10.02□□□□□ -0.81
SMG1-202ENST00000446231 RWDD1Q9H446 243 aaPredicted RBP10.02□□□□□ -0.81
SMG1-202ENST00000446231 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.02□□□□□ -0.81
SMG1-202ENST00000446231 EXOC6Q8TAG9 804 aa10.01□□□□□ -0.81
SMG1-202ENST00000446231 MAP7D2Q96T17 732 aa10□□□□□ -0.81
SMG1-202ENST00000446231 CC2D1BQ5T0F9 858 aaKnown RBP10□□□□□ -0.81
SMG1-202ENST00000446231 CARD11Q9BXL7 1154 aa9.99□□□□□ -0.81
SMG1-202ENST00000446231 TNNT3P45378 269 aaPredicted RBP9.99□□□□□ -0.81
SMG1-202ENST00000446231 FRAT2O75474 233 aaPredicted RBP9.99□□□□□ -0.81
SMG1-202ENST00000446231 TPRNQ4KMQ1 711 aa9.99□□□□□ -0.81
SMG1-202ENST00000446231 RRP1P56182 461 aaKnown RBP9.99□□□□□ -0.81
SMG1-202ENST00000446231 ZMYND15Q9H091 742 aa9.99□□□□□ -0.81
SMG1-202ENST00000446231 CENPQQ7L2Z9 268 aaPredicted RBP9.99□□□□□ -0.81
SMG1-202ENST00000446231 VPS8Q8N3P4 1428 aa9.98□□□□□ -0.81
SMG1-202ENST00000446231 SKOR2Q2VWA4 1001 aaPredicted RBP9.98□□□□□ -0.81
SMG1-202ENST00000446231 SLC24A1O60721 1099 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms