RNA–Protein interactions for RNA: ENST00000441580.5

CPSF4-206, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2 BASIC

Gene CPSF4, Length 942 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-206ENST00000441580 APLP2Q06481 763 aa20.34■□□□□ 0.85
CPSF4-206ENST00000441580 MAP3K1Q13233 1512 aa20.32■□□□□ 0.84
CPSF4-206ENST00000441580 SAMD9Q5K651 1589 aa20.31■□□□□ 0.84
CPSF4-206ENST00000441580 CFAP43Q8NDM7 1665 aa20.29■□□□□ 0.84
CPSF4-206ENST00000441580 RANGAP1P46060 587 aaPredicted RBP20.29■□□□□ 0.84
CPSF4-206ENST00000441580 PPARGC1BQ86YN6 1023 aaKnown RBP20.29■□□□□ 0.84
CPSF4-206ENST00000441580 PCF11O94913 1555 aaKnown RBP20.26■□□□□ 0.83
CPSF4-206ENST00000441580 AQRO60306 1485 aaKnown RBP eCLIP20.26■□□□□ 0.832e-7■■■■■ 81.6
CPSF4-206ENST00000441580 TIAM1Q13009 1591 aa20.25■□□□□ 0.83
CPSF4-206ENST00000441580 FYCO1Q9BQS8 1478 aa20.24■□□□□ 0.83
CPSF4-206ENST00000441580 ZNF608Q9ULD9 1512 aaPredicted RBP20.24■□□□□ 0.83
CPSF4-206ENST00000441580 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
CPSF4-206ENST00000441580 IQGAP2Q13576 1575 aa20.22■□□□□ 0.83
CPSF4-206ENST00000441580 FMN1Q68DA7 1419 aa20.2■□□□□ 0.82
CPSF4-206ENST00000441580 SNAPC4Q5SXM2 1469 aa20.2■□□□□ 0.82
CPSF4-206ENST00000441580 FHOD3Q2V2M9 1422 aa20.18■□□□□ 0.82
CPSF4-206ENST00000441580 ZEB1P37275 1124 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-206ENST00000441580 CASKIN1Q8WXD9 1431 aa20.16■□□□□ 0.82
CPSF4-206ENST00000441580 TTBK1Q5TCY1 1321 aaPredicted RBP20.15■□□□□ 0.82
CPSF4-206ENST00000441580 GRIN2AQ12879 1464 aa20.13■□□□□ 0.81
CPSF4-206ENST00000441580 UGGT2Q9NYU1 1516 aa20.12■□□□□ 0.81
CPSF4-206ENST00000441580 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
CPSF4-206ENST00000441580 LRRC9Q6ZRR7 1453 aa20.08■□□□□ 0.81
CPSF4-206ENST00000441580 RRBP1Q9P2E9 1410 aaKnown RBP20.08■□□□□ 0.8
CPSF4-206ENST00000441580 KIAA0586Q9BVV6 1533 aa20.07■□□□□ 0.8
CPSF4-206ENST00000441580 HECW1Q76N89 1606 aa20.05■□□□□ 0.8
CPSF4-206ENST00000441580 KIAA0556O60303 1618 aa20.03■□□□□ 0.8
CPSF4-206ENST00000441580 CCDC18Q5T9S5 1454 aa20.01■□□□□ 0.79
CPSF4-206ENST00000441580 CEP170Q5SW79 1584 aa20■□□□□ 0.79
CPSF4-206ENST00000441580 KANK4Q5T7N3 995 aaPredicted RBP19.99■□□□□ 0.79
CPSF4-206ENST00000441580 NUP160Q12769 1436 aa19.98■□□□□ 0.79
CPSF4-206ENST00000441580 EHBP1L1Q8N3D4 1523 aa19.97■□□□□ 0.79
CPSF4-206ENST00000441580 LRRIQ1Q96JM4 1722 aa19.96■□□□□ 0.79
CPSF4-206ENST00000441580 P3H3Q8IVL6 736 aa19.95■□□□□ 0.78
CPSF4-206ENST00000441580 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
CPSF4-206ENST00000441580 DISP1Q96F81 1524 aa19.92■□□□□ 0.78
CPSF4-206ENST00000441580 SUPT6HQ7KZ85 1726 aaKnown RBP19.9■□□□□ 0.78
CPSF4-206ENST00000441580 CCER1Q8TC90 406 aaPredicted RBP19.87■□□□□ 0.77
CPSF4-206ENST00000441580 CHMP7Q8WUX9 453 aaPredicted RBP19.87■□□□□ 0.77
CPSF4-206ENST00000441580 RAPGEF6Q8TEU7 1601 aa19.85■□□□□ 0.77
CPSF4-206ENST00000441580 MTUS2Q5JR59 1369 aa19.84■□□□□ 0.77
CPSF4-206ENST00000441580 CHD1O14646 1710 aa19.84■□□□□ 0.77
CPSF4-206ENST00000441580 PHLDB1Q86UU1 1377 aa19.83■□□□□ 0.77
CPSF4-206ENST00000441580 EPRSP07814 1512 aaKnown RBP19.83■□□□□ 0.77
CPSF4-206ENST00000441580 CARMIL2Q6F5E8 1435 aa19.83■□□□□ 0.76
CPSF4-206ENST00000441580 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.83■□□□□ 0.76
CPSF4-206ENST00000441580 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.82■□□□□ 0.76
CPSF4-206ENST00000441580 HNRNPUL2Q1KMD3 747 aaKnown RBP19.81■□□□□ 0.76
CPSF4-206ENST00000441580 ATP1B4Q9UN42 357 aaPredicted RBP19.8■□□□□ 0.76
CPSF4-206ENST00000441580 ARHGEF11O15085 1522 aa19.8■□□□□ 0.76
CPSF4-206ENST00000441580 NCOA2Q15596 1464 aa19.78■□□□□ 0.76
CPSF4-206ENST00000441580 FGD6Q6ZV73 1430 aa19.76■□□□□ 0.75
CPSF4-206ENST00000441580 MAGI3Q5TCQ9 1506 aa19.75■□□□□ 0.75
CPSF4-206ENST00000441580 MYOM3Q5VTT5 1437 aa19.75■□□□□ 0.75
CPSF4-206ENST00000441580 CDK13Q14004 1512 aaKnown RBP19.74■□□□□ 0.75
CPSF4-206ENST00000441580 NUP153P49790 1475 aaKnown RBP19.73■□□□□ 0.75
CPSF4-206ENST00000441580 SHROOM2Q13796 1616 aa19.73■□□□□ 0.75
CPSF4-206ENST00000441580 FBLN2P98095 1184 aa19.71■□□□□ 0.75
CPSF4-206ENST00000441580 ABCA8O94911 1581 aa19.68■□□□□ 0.74
CPSF4-206ENST00000441580 CLSPNQ9HAW4 1339 aa19.68■□□□□ 0.74
CPSF4-206ENST00000441580 ADCY10Q96PN6 1610 aa19.68■□□□□ 0.74
CPSF4-206ENST00000441580 PTPN23Q9H3S7 1636 aa19.68■□□□□ 0.74
CPSF4-206ENST00000441580 TCOF1Q13428 1488 aaKnown RBP19.67■□□□□ 0.74
CPSF4-206ENST00000441580 JPH4Q96JJ6 628 aa19.64■□□□□ 0.73
CPSF4-206ENST00000441580 ITSN2Q9NZM3 1697 aa19.63■□□□□ 0.73
CPSF4-206ENST00000441580 MIA2Q96PC5 1412 aa19.63■□□□□ 0.73
CPSF4-206ENST00000441580 CLASP1Q7Z460 1538 aa19.61■□□□□ 0.73
CPSF4-206ENST00000441580 PLB1Q6P1J6 1458 aa19.61■□□□□ 0.73
CPSF4-206ENST00000441580 DHX57Q6P158 1386 aaKnown RBP19.6■□□□□ 0.73
CPSF4-206ENST00000441580 FAM50AQ14320 339 aaKnown RBP19.6■□□□□ 0.73
CPSF4-206ENST00000441580 TROQ12816 1431 aaPredicted RBP19.59■□□□□ 0.73
CPSF4-206ENST00000441580 PRG4Q92954 1404 aaPredicted RBP19.59■□□□□ 0.73
CPSF4-206ENST00000441580 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
CPSF4-206ENST00000441580 CDK11AQ9UQ88 783 aaPredicted RBP19.58■□□□□ 0.72
CPSF4-206ENST00000441580 RAB3GAP2Q9H2M9 1393 aa19.57■□□□□ 0.72
CPSF4-206ENST00000441580 KIF14Q15058 1648 aa19.55■□□□□ 0.72
CPSF4-206ENST00000441580 AKNAQ7Z591 1439 aa19.55■□□□□ 0.72
CPSF4-206ENST00000441580 GCC2Q8IWJ2 1684 aa19.55■□□□□ 0.72
CPSF4-206ENST00000441580 HFM1A2PYH4 1435 aa19.52■□□□□ 0.72
CPSF4-206ENST00000441580 ITGAEP38570 1179 aa19.52■□□□□ 0.72
CPSF4-206ENST00000441580 PTPRGP23470 1445 aa19.51■□□□□ 0.71
CPSF4-206ENST00000441580 DNMT1P26358 1616 aaKnown RBP19.49■□□□□ 0.71
CPSF4-206ENST00000441580 ABCC2Q92887 1545 aa19.46■□□□□ 0.71
CPSF4-206ENST00000441580 MAPKBP1O60336 1514 aa19.45■□□□□ 0.7
CPSF4-206ENST00000441580 UACAQ9BZF9 1416 aa19.44■□□□□ 0.7
CPSF4-206ENST00000441580 ATP10BO94823 1461 aa19.44■□□□□ 0.7
CPSF4-206ENST00000441580 CROCC2H7BZ55 1655 aa19.43■□□□□ 0.7
CPSF4-206ENST00000441580 PTPRKQ15262 1439 aa19.42■□□□□ 0.7
CPSF4-206ENST00000441580 ADGBQ8N7X0 1667 aa19.41■□□□□ 0.7
CPSF4-206ENST00000441580 ARID3CA6NKF2 412 aa19.41■□□□□ 0.7
CPSF4-206ENST00000441580 NAIPQ13075 1403 aa19.41■□□□□ 0.7
CPSF4-206ENST00000441580 CAMSAP2Q08AD1 1489 aa19.41■□□□□ 0.7
CPSF4-206ENST00000441580 CDC42BPAQ5VT25 1732 aa19.4■□□□□ 0.7
CPSF4-206ENST00000441580 ABCC10Q5T3U5 1492 aa19.4■□□□□ 0.7
CPSF4-206ENST00000441580 ERCC6L2Q5T890 1561 aa19.4■□□□□ 0.7
CPSF4-206ENST00000441580 DAPK1P53355 1430 aa19.39■□□□□ 0.69
CPSF4-206ENST00000441580 UHRF1BP1LA0JNW5 1464 aa19.39■□□□□ 0.69
CPSF4-206ENST00000441580 ROCK1Q13464 1354 aa19.38■□□□□ 0.69
CPSF4-206ENST00000441580 GPATCH8Q9UKJ3 1502 aaKnown RBP19.38■□□□□ 0.69
CPSF4-206ENST00000441580 PREX2Q70Z35 1606 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms