RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 SENP3-EIF4A1A0A087X0R7 540 aa18.77■□□□□ 0.6
ACTN1-204ENST00000438964 RRBP1Q9P2E9 1410 aaKnown RBP18.76■□□□□ 0.59
ACTN1-204ENST00000438964 CNGB1Q14028 1251 aaPredicted RBP18.76■□□□□ 0.59
ACTN1-204ENST00000438964 B4GALNT3Q6L9W6 998 aa18.72■□□□□ 0.59
ACTN1-204ENST00000438964 DEKP35659 375 aaKnown RBP18.71■□□□□ 0.59
ACTN1-204ENST00000438964 SETD5Q9C0A6 1442 aa18.65■□□□□ 0.58
ACTN1-204ENST00000438964 CCER2I3L3R5 266 aa18.65■□□□□ 0.58
ACTN1-204ENST00000438964 CCDC184Q52MB2 194 aa18.65■□□□□ 0.58
ACTN1-204ENST00000438964 FANCIQ9NVI1 1328 aa18.63■□□□□ 0.57
ACTN1-204ENST00000438964 PRKCSHP14314 528 aaPredicted RBP18.62■□□□□ 0.57
ACTN1-204ENST00000438964 FAM9BQ8IZU0 186 aa18.62■□□□□ 0.57
ACTN1-204ENST00000438964 PHLDB1Q86UU1 1377 aa18.62■□□□□ 0.57
ACTN1-204ENST00000438964 UNC13AQ9UPW8 1703 aa18.61■□□□□ 0.57
ACTN1-204ENST00000438964 PAK3O75914 559 aaPredicted RBP18.61■□□□□ 0.57
ACTN1-204ENST00000438964 ARHGAP35Q9NRY4 1499 aa18.6■□□□□ 0.57
ACTN1-204ENST00000438964 CUX2O14529 1486 aa18.6■□□□□ 0.57
ACTN1-204ENST00000438964 PRXQ9BXM0 1461 aa18.59■□□□□ 0.57
ACTN1-204ENST00000438964 ANO8Q9HCE9 1232 aaPredicted RBP18.56■□□□□ 0.56
ACTN1-204ENST00000438964 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
ACTN1-204ENST00000438964 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
ACTN1-204ENST00000438964 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
ACTN1-204ENST00000438964 PPP4R2Q9NY27 417 aa18.48■□□□□ 0.55
ACTN1-204ENST00000438964 ATAD2BQ9ULI0 1458 aa18.47■□□□□ 0.55
ACTN1-204ENST00000438964 CCDC136Q96JN2 1154 aa18.47■□□□□ 0.55
ACTN1-204ENST00000438964 NOP58Q9Y2X3 529 aaKnown RBP18.46■□□□□ 0.55
ACTN1-204ENST00000438964 ERICH3Q5RHP9 1530 aa18.45■□□□□ 0.54
ACTN1-204ENST00000438964 KIF27Q86VH2 1401 aa18.44■□□□□ 0.54
ACTN1-204ENST00000438964 WASHC2AQ641Q2 1341 aa18.43■□□□□ 0.54
ACTN1-204ENST00000438964 HSPA5P11021 654 aaKnown RBP18.42■□□□□ 0.54
ACTN1-204ENST00000438964 SALL2Q9Y467 1007 aaPredicted RBP18.42■□□□□ 0.54
ACTN1-204ENST00000438964 MRS2Q9HD23 443 aa18.41■□□□□ 0.54
ACTN1-204ENST00000438964 POLR3GLQ9BT43 218 aa18.41■□□□□ 0.54
ACTN1-204ENST00000438964 LRRC9Q6ZRR7 1453 aa18.4■□□□□ 0.54
ACTN1-204ENST00000438964 IL27Q8NEV9 243 aa18.4■□□□□ 0.54
ACTN1-204ENST00000438964 NPM2Q86SE8 214 aaKnown RBP18.39■□□□□ 0.54
ACTN1-204ENST00000438964 CHIC2Q9UKJ5 165 aa18.39■□□□□ 0.54
ACTN1-204ENST00000438964 TIAM1Q13009 1591 aa18.39■□□□□ 0.53
ACTN1-204ENST00000438964 FOXD1Q16676 465 aa18.38■□□□□ 0.53
ACTN1-204ENST00000438964 CUX1P39880 1505 aa18.37■□□□□ 0.53
ACTN1-204ENST00000438964 C11orf95C9JLR9 678 aaPredicted RBP18.37■□□□□ 0.53
ACTN1-204ENST00000438964 BICRAQ9NZM4 1560 aa18.37■□□□□ 0.53
ACTN1-204ENST00000438964 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.35■□□□□ 0.53
ACTN1-204ENST00000438964 RRP7BPQ9NSQ0 103 aa18.35■□□□□ 0.53
ACTN1-204ENST00000438964 TIMELESSQ9UNS1 1208 aa18.32■□□□□ 0.52
ACTN1-204ENST00000438964 AKNAQ7Z591 1439 aa18.31■□□□□ 0.52
ACTN1-204ENST00000438964 FHOD3Q2V2M9 1422 aa18.31■□□□□ 0.52
ACTN1-204ENST00000438964 RTL5Q5HYW3 569 aaPredicted RBP18.31■□□□□ 0.52
ACTN1-204ENST00000438964 LAS1LQ9Y4W2 734 aaKnown RBP18.31■□□□□ 0.52
ACTN1-204ENST00000438964 BIVM-ERCC5R4GMW8 1640 aa18.29■□□□□ 0.52
ACTN1-204ENST00000438964 AQRO60306 1485 aaKnown RBP eCLIP18.29■□□□□ 0.524e-7■■■■■ 30.8
ACTN1-204ENST00000438964 PEG3Q9GZU2 1588 aa18.29■□□□□ 0.52
ACTN1-204ENST00000438964 IGF1RP08069 1367 aa18.27■□□□□ 0.52
ACTN1-204ENST00000438964 CCDC18Q5T9S5 1454 aa18.27■□□□□ 0.51
ACTN1-204ENST00000438964 PRKRIP1Q9H875 184 aaPredicted RBP18.27■□□□□ 0.51
ACTN1-204ENST00000438964 PTPRKQ15262 1439 aa18.26■□□□□ 0.51
ACTN1-204ENST00000438964 ARID3CA6NKF2 412 aa18.26■□□□□ 0.51
ACTN1-204ENST00000438964 ANP32AP39687 249 aaKnown RBP18.26■□□□□ 0.51
ACTN1-204ENST00000438964 ZBTB47Q9UFB7 747 aaPredicted RBP18.25■□□□□ 0.51
ACTN1-204ENST00000438964 CARMIL1Q5VZK9 1371 aa18.25■□□□□ 0.51
ACTN1-204ENST00000438964 EIF4G2P78344 907 aaKnown RBP eCLIP18.24■□□□□ 0.516e-7■■■■■ 48.9
ACTN1-204ENST00000438964 PCF11O94913 1555 aaKnown RBP18.22■□□□□ 0.51
ACTN1-204ENST00000438964 MYT1LQ9UL68 1186 aa18.22■□□□□ 0.51
ACTN1-204ENST00000438964 IPO9Q96P70 1041 aaKnown RBP18.21■□□□□ 0.51
ACTN1-204ENST00000438964 L3MBTL2Q969R5 705 aa18.19■□□□□ 0.5
ACTN1-204ENST00000438964 SKAP1Q86WV1 359 aa18.19■□□□□ 0.5
ACTN1-204ENST00000438964 ZNF326Q5BKZ1 582 aaKnown RBP18.18■□□□□ 0.5
ACTN1-204ENST00000438964 ZBED9Q6R2W3 1325 aa18.18■□□□□ 0.5
ACTN1-204ENST00000438964 MTUS2Q5JR59 1369 aa18.15■□□□□ 0.5
ACTN1-204ENST00000438964 ERICH6BQ5W0A0 696 aa18.15■□□□□ 0.5
ACTN1-204ENST00000438964 FHAD1B1AJZ9 1412 aa18.15■□□□□ 0.5
ACTN1-204ENST00000438964 FGD6Q6ZV73 1430 aa18.14■□□□□ 0.49
ACTN1-204ENST00000438964 CNTLNQ9NXG0 1405 aa18.14■□□□□ 0.49
ACTN1-204ENST00000438964 UACAQ9BZF9 1416 aa18.14■□□□□ 0.49
ACTN1-204ENST00000438964 NEFMP07197 916 aa18.13■□□□□ 0.49
ACTN1-204ENST00000438964 NBPF8Q3BBV2 869 aa18.12■□□□□ 0.49
ACTN1-204ENST00000438964 KDM5BQ9UGL1 1544 aa18.11■□□□□ 0.49
ACTN1-204ENST00000438964 CCDC7Q96M83 1385 aa18.1■□□□□ 0.49
ACTN1-204ENST00000438964 NAIPQ13075 1403 aa18.09■□□□□ 0.49
ACTN1-204ENST00000438964 KIF7Q2M1P5 1343 aa18.09■□□□□ 0.49
ACTN1-204ENST00000438964 HFM1A2PYH4 1435 aa18.06■□□□□ 0.48
ACTN1-204ENST00000438964 MAP3K1Q13233 1512 aa18.06■□□□□ 0.48
ACTN1-204ENST00000438964 PTPN23Q9H3S7 1636 aa18.05■□□□□ 0.48
ACTN1-204ENST00000438964 SLC4A3P48751 1232 aa18.05■□□□□ 0.48
ACTN1-204ENST00000438964 NUDCQ9Y266 331 aa18.05■□□□□ 0.48
ACTN1-204ENST00000438964 BRPF3Q9ULD4 1205 aa18.05■□□□□ 0.48
ACTN1-204ENST00000438964 EXOC6Q8TAG9 804 aa18.04■□□□□ 0.48
ACTN1-204ENST00000438964 MPHOSPH9Q99550 1183 aa18.04■□□□□ 0.48
ACTN1-204ENST00000438964 EIF5BO60841 1220 aaKnown RBP18.02■□□□□ 0.48
ACTN1-204ENST00000438964 CFAP43Q8NDM7 1665 aa18.02■□□□□ 0.47
ACTN1-204ENST00000438964 FGD5Q6ZNL6 1462 aa18.01■□□□□ 0.47
ACTN1-204ENST00000438964 FMN1Q68DA7 1419 aa18■□□□□ 0.47
ACTN1-204ENST00000438964 NCOA2Q15596 1464 aa17.98■□□□□ 0.47
ACTN1-204ENST00000438964 NCOA1Q15788 1441 aa17.97■□□□□ 0.47
ACTN1-204ENST00000438964 DENND4BO75064 1496 aaPredicted RBP17.97■□□□□ 0.47
ACTN1-204ENST00000438964 PLIN1O60240 522 aa17.97■□□□□ 0.47
ACTN1-204ENST00000438964 CFTRP13569 1480 aa17.97■□□□□ 0.47
ACTN1-204ENST00000438964 TMC1Q8TDI8 760 aa17.97■□□□□ 0.47
ACTN1-204ENST00000438964 PDE4AP27815 886 aa17.96■□□□□ 0.47
ACTN1-204ENST00000438964 KDM6BO15054 1643 aa17.96■□□□□ 0.47
ACTN1-204ENST00000438964 RAD54L2Q9Y4B4 1467 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms