RNA–Protein interactions for RNA: ENST00000438700.7

PTCHD3-201, Transcript of patched domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD3, Length 2,529 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-201ENST00000438700 ZNF608Q9ULD9 1512 aaPredicted RBP21.26■□□□□ 0.99
PTCHD3-201ENST00000438700 SCAF1Q9H7N4 1312 aaKnown RBP21.25■□□□□ 0.99
PTCHD3-201ENST00000438700 CTTNBP2Q8WZ74 1663 aa21.24■□□□□ 0.99
PTCHD3-201ENST00000438700 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
PTCHD3-201ENST00000438700 ADAMTS12P58397 1594 aa21.18■□□□□ 0.98
PTCHD3-201ENST00000438700 EIF4G3O43432 1585 aaKnown RBP21.18■□□□□ 0.98
PTCHD3-201ENST00000438700 CCER1Q8TC90 406 aaPredicted RBP21.18■□□□□ 0.98
PTCHD3-201ENST00000438700 FHAD1B1AJZ9 1412 aa21.16■□□□□ 0.98
PTCHD3-201ENST00000438700 APLP2Q06481 763 aa21.15■□□□□ 0.98
PTCHD3-201ENST00000438700 EFCAB5A4FU69 1503 aa21.09■□□□□ 0.97
PTCHD3-201ENST00000438700 SNAPC4Q5SXM2 1469 aa21.08■□□□□ 0.97
PTCHD3-201ENST00000438700 P3H3Q8IVL6 736 aa21.07■□□□□ 0.96
PTCHD3-201ENST00000438700 PELP1Q8IZL8 1130 aaKnown RBP21.05■□□□□ 0.96
PTCHD3-201ENST00000438700 FHOD3Q2V2M9 1422 aa21.04■□□□□ 0.96
PTCHD3-201ENST00000438700 SAMD9Q5K651 1589 aa21.01■□□□□ 0.95
PTCHD3-201ENST00000438700 MAGI1Q96QZ7 1491 aaPredicted RBP20.99■□□□□ 0.95
PTCHD3-201ENST00000438700 PCF11O94913 1555 aaKnown RBP20.98■□□□□ 0.95
PTCHD3-201ENST00000438700 IQGAP2Q13576 1575 aa20.98■□□□□ 0.95
PTCHD3-201ENST00000438700 KANK4Q5T7N3 995 aaPredicted RBP20.97■□□□□ 0.95
PTCHD3-201ENST00000438700 GRIN2AQ12879 1464 aa20.96■□□□□ 0.95
PTCHD3-201ENST00000438700 SYNJ2O15056 1496 aa20.93■□□□□ 0.94
PTCHD3-201ENST00000438700 HNRNPUL2Q1KMD3 747 aaKnown RBP20.93■□□□□ 0.94
PTCHD3-201ENST00000438700 TIAM1Q13009 1591 aa20.92■□□□□ 0.94
PTCHD3-201ENST00000438700 FMN1Q68DA7 1419 aa20.9■□□□□ 0.94
PTCHD3-201ENST00000438700 MAP3K1Q13233 1512 aa20.9■□□□□ 0.94
PTCHD3-201ENST00000438700 FYCO1Q9BQS8 1478 aa20.9■□□□□ 0.94
PTCHD3-201ENST00000438700 CHMP7Q8WUX9 453 aaPredicted RBP20.89■□□□□ 0.93
PTCHD3-201ENST00000438700 CASKIN1Q8WXD9 1431 aa20.89■□□□□ 0.93
PTCHD3-201ENST00000438700 KIAA0586Q9BVV6 1533 aa20.88■□□□□ 0.93
PTCHD3-201ENST00000438700 CFAP43Q8NDM7 1665 aa20.87■□□□□ 0.93
PTCHD3-201ENST00000438700 ATP1B4Q9UN42 357 aaPredicted RBP20.87■□□□□ 0.93
PTCHD3-201ENST00000438700 FBLN2P98095 1184 aa20.86■□□□□ 0.93
PTCHD3-201ENST00000438700 CEP170Q5SW79 1584 aa20.85■□□□□ 0.93
PTCHD3-201ENST00000438700 UGGT2Q9NYU1 1516 aa20.85■□□□□ 0.93
PTCHD3-201ENST00000438700 LRRC9Q6ZRR7 1453 aa20.82■□□□□ 0.92
PTCHD3-201ENST00000438700 NEUROD1Q13562 356 aa20.8■□□□□ 0.92
PTCHD3-201ENST00000438700 NUP160Q12769 1436 aa20.78■□□□□ 0.92
PTCHD3-201ENST00000438700 LRRIQ1Q96JM4 1722 aa20.77■□□□□ 0.92
PTCHD3-201ENST00000438700 KIAA0556O60303 1618 aa20.77■□□□□ 0.92
PTCHD3-201ENST00000438700 DISP1Q96F81 1524 aa20.76■□□□□ 0.91
PTCHD3-201ENST00000438700 ACIN1Q9UKV3 1341 aaKnown RBP20.75■□□□□ 0.91
PTCHD3-201ENST00000438700 RRBP1Q9P2E9 1410 aaKnown RBP20.73■□□□□ 0.91
PTCHD3-201ENST00000438700 CHD1O14646 1710 aa20.71■□□□□ 0.91
PTCHD3-201ENST00000438700 HECW1Q76N89 1606 aa20.69■□□□□ 0.9
PTCHD3-201ENST00000438700 CCNB3Q8WWL7 1395 aa20.67■□□□□ 0.9
PTCHD3-201ENST00000438700 PHLDB1Q86UU1 1377 aa20.66■□□□□ 0.9
PTCHD3-201ENST00000438700 JPH4Q96JJ6 628 aa20.65■□□□□ 0.9
PTCHD3-201ENST00000438700 CCDC18Q5T9S5 1454 aa20.64■□□□□ 0.89
PTCHD3-201ENST00000438700 MTUS2Q5JR59 1369 aa20.63■□□□□ 0.89
PTCHD3-201ENST00000438700 GTF3C3Q9Y5Q9 886 aa20.63■□□□□ 0.89
PTCHD3-201ENST00000438700 EPRSP07814 1512 aaKnown RBP20.61■□□□□ 0.89
PTCHD3-201ENST00000438700 CARMIL2Q6F5E8 1435 aa20.61■□□□□ 0.89
PTCHD3-201ENST00000438700 DIEXFQ68CQ4 756 aaKnown RBP20.6■□□□□ 0.89
PTCHD3-201ENST00000438700 CDK13Q14004 1512 aaKnown RBP20.59■□□□□ 0.89
PTCHD3-201ENST00000438700 EHBP1L1Q8N3D4 1523 aa20.59■□□□□ 0.89
PTCHD3-201ENST00000438700 RAPGEF6Q8TEU7 1601 aa20.59■□□□□ 0.89
PTCHD3-201ENST00000438700 MAGI3Q5TCQ9 1506 aa20.58■□□□□ 0.89
PTCHD3-201ENST00000438700 ARID3CA6NKF2 412 aa20.56■□□□□ 0.88
PTCHD3-201ENST00000438700 SUPT6HQ7KZ85 1726 aaKnown RBP20.55■□□□□ 0.88
PTCHD3-201ENST00000438700 NUP153P49790 1475 aaKnown RBP20.55■□□□□ 0.88
PTCHD3-201ENST00000438700 NCOA2Q15596 1464 aa20.53■□□□□ 0.88
PTCHD3-201ENST00000438700 ITGAEP38570 1179 aa20.52■□□□□ 0.88
PTCHD3-201ENST00000438700 PLB1Q6P1J6 1458 aa20.52■□□□□ 0.88
PTCHD3-201ENST00000438700 PRG4Q92954 1404 aaPredicted RBP20.51■□□□□ 0.87
PTCHD3-201ENST00000438700 FAM50AQ14320 339 aaKnown RBP20.5■□□□□ 0.87
PTCHD3-201ENST00000438700 ZNF316A6NFI3 1004 aaPredicted RBP20.49■□□□□ 0.87
PTCHD3-201ENST00000438700 FGD6Q6ZV73 1430 aa20.48■□□□□ 0.87
PTCHD3-201ENST00000438700 SHROOM2Q13796 1616 aa20.48■□□□□ 0.87
PTCHD3-201ENST00000438700 ARHGEF11O15085 1522 aa20.47■□□□□ 0.87
PTCHD3-201ENST00000438700 MYOM3Q5VTT5 1437 aa20.46■□□□□ 0.87
PTCHD3-201ENST00000438700 DHX57Q6P158 1386 aaKnown RBP20.45■□□□□ 0.86
PTCHD3-201ENST00000438700 CENPBP07199 599 aaPredicted RBP20.44■□□□□ 0.86
PTCHD3-201ENST00000438700 ABCA8O94911 1581 aa20.44■□□□□ 0.86
PTCHD3-201ENST00000438700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.42■□□□□ 0.86
PTCHD3-201ENST00000438700 CLASP1Q7Z460 1538 aa20.42■□□□□ 0.86
PTCHD3-201ENST00000438700 PTPRGP23470 1445 aa20.39■□□□□ 0.86
PTCHD3-201ENST00000438700 ERCC6L2Q5T890 1561 aa20.39■□□□□ 0.85
PTCHD3-201ENST00000438700 CDK11AQ9UQ88 783 aaPredicted RBP20.38■□□□□ 0.85
PTCHD3-201ENST00000438700 PTPN23Q9H3S7 1636 aa20.37■□□□□ 0.85
PTCHD3-201ENST00000438700 TROQ12816 1431 aaPredicted RBP20.34■□□□□ 0.85
PTCHD3-201ENST00000438700 CLSPNQ9HAW4 1339 aa20.34■□□□□ 0.85
PTCHD3-201ENST00000438700 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
PTCHD3-201ENST00000438700 RAB3GAP2Q9H2M9 1393 aa20.32■□□□□ 0.84
PTCHD3-201ENST00000438700 ATP10BO94823 1461 aa20.32■□□□□ 0.84
PTCHD3-201ENST00000438700 SETD5Q9C0A6 1442 aa20.31■□□□□ 0.84
PTCHD3-201ENST00000438700 TCOF1Q13428 1488 aaKnown RBP20.31■□□□□ 0.84
PTCHD3-201ENST00000438700 MIA2Q96PC5 1412 aa20.29■□□□□ 0.84
PTCHD3-201ENST00000438700 KIF14Q15058 1648 aa20.29■□□□□ 0.84
PTCHD3-201ENST00000438700 ADCY10Q96PN6 1610 aa20.29■□□□□ 0.84
PTCHD3-201ENST00000438700 PTPRKQ15262 1439 aa20.28■□□□□ 0.84
PTCHD3-201ENST00000438700 UACAQ9BZF9 1416 aa20.28■□□□□ 0.84
PTCHD3-201ENST00000438700 PLEKHD1A6NEE1 506 aa20.24■□□□□ 0.83
PTCHD3-201ENST00000438700 ITSN2Q9NZM3 1697 aa20.22■□□□□ 0.83
PTCHD3-201ENST00000438700 ABCC2Q92887 1545 aa20.22■□□□□ 0.83
PTCHD3-201ENST00000438700 GPATCH8Q9UKJ3 1502 aaKnown RBP20.19■□□□□ 0.82
PTCHD3-201ENST00000438700 MIER1Q8N108 512 aa20.19■□□□□ 0.82
PTCHD3-201ENST00000438700 HFM1A2PYH4 1435 aa20.19■□□□□ 0.82
PTCHD3-201ENST00000438700 ZNF644Q9H582 1327 aaPredicted RBP20.16■□□□□ 0.82
PTCHD3-201ENST00000438700 ABCC10Q5T3U5 1492 aa20.16■□□□□ 0.82
PTCHD3-201ENST00000438700 CDC42BPAQ5VT25 1732 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms