RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 RRBP1Q9P2E9 1410 aaKnown RBP25.15■■□□□ 1.62
LIMK1-203ENST00000435201 TARBP1Q13395 1621 aaKnown RBP25.14■■□□□ 1.61
LIMK1-203ENST00000435201 TDRD9Q8NDG6 1382 aaKnown RBP25.1■■□□□ 1.61
LIMK1-203ENST00000435201 CFAP43Q8NDM7 1665 aa25.09■■□□□ 1.61
LIMK1-203ENST00000435201 MRC2Q9UBG0 1479 aa25.08■■□□□ 1.6
LIMK1-203ENST00000435201 PCF11O94913 1555 aaKnown RBP25.07■■□□□ 1.6
LIMK1-203ENST00000435201 AQRO60306 1485 aaKnown RBP eCLIP25.03■■□□□ 1.63e-6■■■■□ 24
LIMK1-203ENST00000435201 FYCO1Q9BQS8 1478 aa25.03■■□□□ 1.6
LIMK1-203ENST00000435201 LRRC9Q6ZRR7 1453 aa25.02■■□□□ 1.6
LIMK1-203ENST00000435201 CCNB3Q8WWL7 1395 aa25.01■■□□□ 1.59
LIMK1-203ENST00000435201 FHOD3Q2V2M9 1422 aa25.01■■□□□ 1.59
LIMK1-203ENST00000435201 PBRM1Q86U86 1689 aa25.01■■□□□ 1.59
LIMK1-203ENST00000435201 CASKIN1Q8WXD9 1431 aa24.98■■□□□ 1.59
LIMK1-203ENST00000435201 SAMD9Q5K651 1589 aa24.98■■□□□ 1.59
LIMK1-203ENST00000435201 FMN1Q68DA7 1419 aa24.96■■□□□ 1.59
LIMK1-203ENST00000435201 P3H3Q8IVL6 736 aa24.94■■□□□ 1.58
LIMK1-203ENST00000435201 WDR62O43379 1518 aa24.92■■□□□ 1.58
LIMK1-203ENST00000435201 CLSPNQ9HAW4 1339 aa24.9■■□□□ 1.58
LIMK1-203ENST00000435201 ADAMTS12P58397 1594 aa24.89■■□□□ 1.58
LIMK1-203ENST00000435201 IFT140Q96RY7 1462 aa24.88■■□□□ 1.57
LIMK1-203ENST00000435201 SNAPC4Q5SXM2 1469 aa24.87■■□□□ 1.57
LIMK1-203ENST00000435201 GRIN2BQ13224 1484 aa24.85■■□□□ 1.57
LIMK1-203ENST00000435201 DHX57Q6P158 1386 aaKnown RBP24.83■■□□□ 1.57
LIMK1-203ENST00000435201 THOC2Q8NI27 1593 aaKnown RBP24.83■■□□□ 1.56
LIMK1-203ENST00000435201 PHLDB1Q86UU1 1377 aa24.82■■□□□ 1.56
LIMK1-203ENST00000435201 ATP1B4Q9UN42 357 aaPredicted RBP24.8■■□□□ 1.56
LIMK1-203ENST00000435201 IQGAP2Q13576 1575 aa24.77■■□□□ 1.56
LIMK1-203ENST00000435201 ZNF316A6NFI3 1004 aaPredicted RBP24.73■■□□□ 1.55
LIMK1-203ENST00000435201 LRRIQ1Q96JM4 1722 aa24.73■■□□□ 1.55
LIMK1-203ENST00000435201 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.72■■□□□ 1.55
LIMK1-203ENST00000435201 ERCC6Q03468 1493 aa24.72■■□□□ 1.55
LIMK1-203ENST00000435201 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
LIMK1-203ENST00000435201 DIEXFQ68CQ4 756 aaKnown RBP24.7■■□□□ 1.55
LIMK1-203ENST00000435201 ITGAEP38570 1179 aa24.68■■□□□ 1.54
LIMK1-203ENST00000435201 EIF4G3O43432 1585 aaKnown RBP24.68■■□□□ 1.54
LIMK1-203ENST00000435201 MTUS2Q5JR59 1369 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 CCDC18Q5T9S5 1454 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 EHBP1L1Q8N3D4 1523 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 UGGT2Q9NYU1 1516 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 RAB3GAP2Q9H2M9 1393 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 SETD5Q9C0A6 1442 aa24.65■■□□□ 1.54
LIMK1-203ENST00000435201 HECW1Q76N89 1606 aa24.64■■□□□ 1.54
LIMK1-203ENST00000435201 FAM50AQ14320 339 aaKnown RBP24.64■■□□□ 1.53
LIMK1-203ENST00000435201 SUPT6HQ7KZ85 1726 aaKnown RBP24.62■■□□□ 1.53
LIMK1-203ENST00000435201 FGD6Q6ZV73 1430 aa24.61■■□□□ 1.53
LIMK1-203ENST00000435201 KIAA0586Q9BVV6 1533 aa24.58■■□□□ 1.53
LIMK1-203ENST00000435201 GRIN2AQ12879 1464 aa24.57■■□□□ 1.52
LIMK1-203ENST00000435201 NCOA2Q15596 1464 aa24.57■■□□□ 1.52
LIMK1-203ENST00000435201 MAGI1Q96QZ7 1491 aaPredicted RBP24.56■■□□□ 1.52
LIMK1-203ENST00000435201 MYOM3Q5VTT5 1437 aa24.53■■□□□ 1.52
LIMK1-203ENST00000435201 ARHGEF11O15085 1522 aa24.52■■□□□ 1.52
LIMK1-203ENST00000435201 KIAA0556O60303 1618 aa24.52■■□□□ 1.52
LIMK1-203ENST00000435201 MAPKBP1O60336 1514 aa24.51■■□□□ 1.51
LIMK1-203ENST00000435201 EPRSP07814 1512 aaKnown RBP24.5■■□□□ 1.51
LIMK1-203ENST00000435201 MAGI3Q5TCQ9 1506 aa24.49■■□□□ 1.51
LIMK1-203ENST00000435201 SYNJ2O15056 1496 aa24.47■■□□□ 1.51
LIMK1-203ENST00000435201 DISP1Q96F81 1524 aa24.46■■□□□ 1.51
LIMK1-203ENST00000435201 PTPN23Q9H3S7 1636 aa24.44■■□□□ 1.5
LIMK1-203ENST00000435201 CEP170Q5SW79 1584 aa24.4■■□□□ 1.5
LIMK1-203ENST00000435201 CDK13Q14004 1512 aaKnown RBP24.4■■□□□ 1.5
LIMK1-203ENST00000435201 TCOF1Q13428 1488 aaKnown RBP24.39■■□□□ 1.49
LIMK1-203ENST00000435201 HFM1A2PYH4 1435 aa24.39■■□□□ 1.49
LIMK1-203ENST00000435201 RAPGEF6Q8TEU7 1601 aa24.37■■□□□ 1.49
LIMK1-203ENST00000435201 CHMP7Q8WUX9 453 aaPredicted RBP24.36■■□□□ 1.49
LIMK1-203ENST00000435201 PTPRKQ15262 1439 aa24.34■■□□□ 1.49
LIMK1-203ENST00000435201 NUP160Q12769 1436 aa24.33■■□□□ 1.49
LIMK1-203ENST00000435201 MIA2Q96PC5 1412 aa24.33■■□□□ 1.49
LIMK1-203ENST00000435201 NUP153P49790 1475 aaKnown RBP24.31■■□□□ 1.48
LIMK1-203ENST00000435201 NAIPQ13075 1403 aa24.28■■□□□ 1.48
LIMK1-203ENST00000435201 TIMELESSQ9UNS1 1208 aa24.27■■□□□ 1.48
LIMK1-203ENST00000435201 UACAQ9BZF9 1416 aa24.26■■□□□ 1.47
LIMK1-203ENST00000435201 CARMIL2Q6F5E8 1435 aa24.26■■□□□ 1.47
LIMK1-203ENST00000435201 GCC2Q8IWJ2 1684 aa24.26■■□□□ 1.47
LIMK1-203ENST00000435201 AKNAQ7Z591 1439 aa24.25■■□□□ 1.47
LIMK1-203ENST00000435201 CENPBP07199 599 aaPredicted RBP24.21■■□□□ 1.47
LIMK1-203ENST00000435201 FBLN2P98095 1184 aa24.21■■□□□ 1.47
LIMK1-203ENST00000435201 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
LIMK1-203ENST00000435201 ARID3CA6NKF2 412 aa24.17■■□□□ 1.46
LIMK1-203ENST00000435201 MIER1Q8N108 512 aa24.17■■□□□ 1.46
LIMK1-203ENST00000435201 ACIN1Q9UKV3 1341 aaKnown RBP24.17■■□□□ 1.46
LIMK1-203ENST00000435201 JPH4Q96JJ6 628 aa24.17■■□□□ 1.46
LIMK1-203ENST00000435201 SIN3AQ96ST3 1273 aa24.17■■□□□ 1.46
LIMK1-203ENST00000435201 ADCY10Q96PN6 1610 aa24.14■■□□□ 1.46
LIMK1-203ENST00000435201 TROQ12816 1431 aaPredicted RBP24.14■■□□□ 1.46
LIMK1-203ENST00000435201 PLB1Q6P1J6 1458 aa24.14■■□□□ 1.46
LIMK1-203ENST00000435201 NEUROD1Q13562 356 aa24.13■■□□□ 1.45
LIMK1-203ENST00000435201 ITSN2Q9NZM3 1697 aa24.13■■□□□ 1.45
LIMK1-203ENST00000435201 DNMT1P26358 1616 aaKnown RBP24.12■■□□□ 1.45
LIMK1-203ENST00000435201 ABCA8O94911 1581 aa24.09■■□□□ 1.45
LIMK1-203ENST00000435201 SCAF1Q9H7N4 1312 aaKnown RBP24.09■■□□□ 1.45
LIMK1-203ENST00000435201 DAPK1P53355 1430 aa24.08■■□□□ 1.44
LIMK1-203ENST00000435201 ROCK1Q13464 1354 aa24.07■■□□□ 1.44
LIMK1-203ENST00000435201 PRG4Q92954 1404 aaPredicted RBP24.06■■□□□ 1.44
LIMK1-203ENST00000435201 RRP7BPQ9NSQ0 103 aa24.06■■□□□ 1.44
LIMK1-203ENST00000435201 CHIC2Q9UKJ5 165 aa24.04■■□□□ 1.44
LIMK1-203ENST00000435201 TONSLQ96HA7 1378 aa24.04■■□□□ 1.44
LIMK1-203ENST00000435201 PPP1R15AO75807 674 aaPredicted RBP24.02■■□□□ 1.44
LIMK1-203ENST00000435201 ABCC5O15440 1437 aa24.02■■□□□ 1.44
LIMK1-203ENST00000435201 KIF14Q15058 1648 aa24.02■■□□□ 1.44
LIMK1-203ENST00000435201 CHD1O14646 1710 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms