RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.26□□□□□ -1.25
RIF1-203ENST00000428287 ABCA5Q8WWZ7 1642 aa7.26□□□□□ -1.25
RIF1-203ENST00000428287 KAT6BQ8WYB5 2073 aa7.26□□□□□ -1.25
RIF1-203ENST00000428287 FKBP8Q14318 412 aa7.25□□□□□ -1.25
RIF1-203ENST00000428287 TIAM1Q13009 1591 aa7.24□□□□□ -1.25
RIF1-203ENST00000428287 BICRAQ9NZM4 1560 aa7.23□□□□□ -1.25
RIF1-203ENST00000428287 RAB3GAP2Q9H2M9 1393 aa7.22□□□□□ -1.25
RIF1-203ENST00000428287 NEFLP07196 543 aa7.21□□□□□ -1.25
RIF1-203ENST00000428287 ARHGAP35Q9NRY4 1499 aa7.21□□□□□ -1.26
RIF1-203ENST00000428287 KDM5BQ9UGL1 1544 aa7.2□□□□□ -1.26
RIF1-203ENST00000428287 SETD5Q9C0A6 1442 aa7.18□□□□□ -1.26
RIF1-203ENST00000428287 RNF123Q5XPI4 1314 aa7.18□□□□□ -1.26
RIF1-203ENST00000428287 C11orf95C9JLR9 678 aaPredicted RBP7.18□□□□□ -1.26
RIF1-203ENST00000428287 LRRIQ1Q96JM4 1722 aa7.18□□□□□ -1.26
RIF1-203ENST00000428287 KANK4Q5T7N3 995 aaPredicted RBP7.17□□□□□ -1.26
RIF1-203ENST00000428287 NCAPD3P42695 1498 aa7.17□□□□□ -1.26
RIF1-203ENST00000428287 FHAD1B1AJZ9 1412 aa7.17□□□□□ -1.26
RIF1-203ENST00000428287 NCOA2Q15596 1464 aa7.16□□□□□ -1.26
RIF1-203ENST00000428287 DDX10Q13206 875 aaKnown RBP7.16□□□□□ -1.26
RIF1-203ENST00000428287 LRRC9Q6ZRR7 1453 aa7.16□□□□□ -1.26
RIF1-203ENST00000428287 AK9Q5TCS8 1911 aa7.15□□□□□ -1.26
RIF1-203ENST00000428287 GCC2Q8IWJ2 1684 aa7.15□□□□□ -1.26
RIF1-203ENST00000428287 CDK11AQ9UQ88 783 aaPredicted RBP7.15□□□□□ -1.27
RIF1-203ENST00000428287 DEKP35659 375 aaKnown RBP7.14□□□□□ -1.27
RIF1-203ENST00000428287 WASHC2AQ641Q2 1341 aa7.14□□□□□ -1.27
RIF1-203ENST00000428287 HECW1Q76N89 1606 aa7.14□□□□□ -1.27
RIF1-203ENST00000428287 PPP4R2Q9NY27 417 aa7.13□□□□□ -1.27
RIF1-203ENST00000428287 ATAD2BQ9ULI0 1458 aa7.13□□□□□ -1.27
RIF1-203ENST00000428287 TRIM52Q96A61 297 aa7.13□□□□□ -1.27
RIF1-203ENST00000428287 CTTNBP2Q8WZ74 1663 aa7.12□□□□□ -1.27
RIF1-203ENST00000428287 ANP32CO43423 234 aa7.12□□□□□ -1.27
RIF1-203ENST00000428287 USP35Q9P2H5 1018 aa7.12□□□□□ -1.27
RIF1-203ENST00000428287 ITGAEP38570 1179 aa7.12□□□□□ -1.27
RIF1-203ENST00000428287 ZBED9Q6R2W3 1325 aa7.12□□□□□ -1.27
RIF1-203ENST00000428287 KIF27Q86VH2 1401 aa7.11□□□□□ -1.27
RIF1-203ENST00000428287 UACAQ9BZF9 1416 aa7.11□□□□□ -1.27
RIF1-203ENST00000428287 HFM1A2PYH4 1435 aa7.11□□□□□ -1.27
RIF1-203ENST00000428287 WASHC2CQ9Y4E1 1318 aa7.11□□□□□ -1.27
RIF1-203ENST00000428287 AQRO60306 1485 aaKnown RBP eCLIP7.1□□□□□ -1.274e-7■■■■■ 36.2
RIF1-203ENST00000428287 BCANQ96GW7 911 aa7.1□□□□□ -1.27
RIF1-203ENST00000428287 CUX1P39880 1505 aa7.09□□□□□ -1.27
RIF1-203ENST00000428287 KIF21AQ7Z4S6 1674 aa7.09□□□□□ -1.28
RIF1-203ENST00000428287 PTPN23Q9H3S7 1636 aa7.08□□□□□ -1.28
RIF1-203ENST00000428287 AKNAQ7Z591 1439 aa7.08□□□□□ -1.28
RIF1-203ENST00000428287 UBE2Q2Q8WVN8 375 aa7.08□□□□□ -1.28
RIF1-203ENST00000428287 PHLDB1Q86UU1 1377 aa7.08□□□□□ -1.28
RIF1-203ENST00000428287 SPATA31E1Q6ZUB1 1445 aa7.08□□□□□ -1.28
RIF1-203ENST00000428287 PAK3O75914 559 aaPredicted RBP7.07□□□□□ -1.28
RIF1-203ENST00000428287 HMGXB3Q12766 1538 aa7.07□□□□□ -1.28
RIF1-203ENST00000428287 NOP58Q9Y2X3 529 aaKnown RBP7.07□□□□□ -1.28
RIF1-203ENST00000428287 NCOA1Q15788 1441 aa7.07□□□□□ -1.28
RIF1-203ENST00000428287 ANO8Q9HCE9 1232 aaPredicted RBP7.06□□□□□ -1.28
RIF1-203ENST00000428287 CCDC18Q5T9S5 1454 aa7.06□□□□□ -1.28
RIF1-203ENST00000428287 FYCO1Q9BQS8 1478 aa7.06□□□□□ -1.28
RIF1-203ENST00000428287 NAIPQ13075 1403 aa7.06□□□□□ -1.28
RIF1-203ENST00000428287 PCF11O94913 1555 aaKnown RBP7.06□□□□□ -1.28
RIF1-203ENST00000428287 EFCAB5A4FU69 1503 aa7.05□□□□□ -1.28
RIF1-203ENST00000428287 IPO9Q96P70 1041 aaKnown RBP7.05□□□□□ -1.28
RIF1-203ENST00000428287 E9PCH4 1651 aa7.05□□□□□ -1.28
RIF1-203ENST00000428287 SUPT6HQ7KZ85 1726 aaKnown RBP7.04□□□□□ -1.28
RIF1-203ENST00000428287 THOC2Q8NI27 1593 aaKnown RBP7.04□□□□□ -1.28
RIF1-203ENST00000428287 BCORL1Q5H9F3 1711 aa7.04□□□□□ -1.28
RIF1-203ENST00000428287 HNRNPUQ00839 825 aaKnown RBP eCLIP7.04□□□□□ -1.28
RIF1-203ENST00000428287 DENND4BO75064 1496 aaPredicted RBP7.04□□□□□ -1.28
RIF1-203ENST00000428287 CFTRP13569 1480 aa7.04□□□□□ -1.28
RIF1-203ENST00000428287 SIN3AQ96ST3 1273 aa7.03□□□□□ -1.28
RIF1-203ENST00000428287 SMG6Q86US8 1419 aaKnown RBP7.03□□□□□ -1.28
RIF1-203ENST00000428287 FGD5Q6ZNL6 1462 aa7.03□□□□□ -1.28
RIF1-203ENST00000428287 PRKRIP1Q9H875 184 aaPredicted RBP7.03□□□□□ -1.28
RIF1-203ENST00000428287 CC2D2AQ9P2K1 1620 aa7.02□□□□□ -1.29
RIF1-203ENST00000428287 CNTLNQ9NXG0 1405 aa7.02□□□□□ -1.29
RIF1-203ENST00000428287 TONSLQ96HA7 1378 aa7.01□□□□□ -1.29
RIF1-203ENST00000428287 FGD6Q6ZV73 1430 aa7.01□□□□□ -1.29
RIF1-203ENST00000428287 CUL7Q14999 1698 aa7.01□□□□□ -1.29
RIF1-203ENST00000428287 SALL2Q9Y467 1007 aaPredicted RBP7.01□□□□□ -1.29
RIF1-203ENST00000428287 ARHGEF11O15085 1522 aa7.01□□□□□ -1.29
RIF1-203ENST00000428287 ZMYM4Q5VZL5 1548 aa7□□□□□ -1.29
RIF1-203ENST00000428287 IGF1RP08069 1367 aa7□□□□□ -1.29
RIF1-203ENST00000428287 SAMD9Q5K651 1589 aa7□□□□□ -1.29
RIF1-203ENST00000428287 CASKIN1Q8WXD9 1431 aa7□□□□□ -1.29
RIF1-203ENST00000428287 B4GALNT3Q6L9W6 998 aa6.99□□□□□ -1.29
RIF1-203ENST00000428287 CCDC136Q96JN2 1154 aa6.99□□□□□ -1.29
RIF1-203ENST00000428287 RPRD2Q5VT52 1461 aaKnown RBP6.99□□□□□ -1.29
RIF1-203ENST00000428287 MIA2Q96PC5 1412 aa6.98□□□□□ -1.29
RIF1-203ENST00000428287 CACNA1FO60840 1977 aa6.98□□□□□ -1.29
RIF1-203ENST00000428287 SNAPC4Q5SXM2 1469 aa6.98□□□□□ -1.29
RIF1-203ENST00000428287 MS4A1P11836 297 aa6.98□□□□□ -1.29
RIF1-203ENST00000428287 TEX14Q8IWB6 1497 aa6.98□□□□□ -1.29
RIF1-203ENST00000428287 PTPRKQ15262 1439 aa6.97□□□□□ -1.29
RIF1-203ENST00000428287 CCDC7Q96M83 1385 aa6.97□□□□□ -1.29
RIF1-203ENST00000428287 FMN1Q68DA7 1419 aa6.96□□□□□ -1.29
RIF1-203ENST00000428287 LRPPRCP42704 1394 aaKnown RBP6.96□□□□□ -1.29
RIF1-203ENST00000428287 IL27Q8NEV9 243 aa6.96□□□□□ -1.29
RIF1-203ENST00000428287 CCDC184Q52MB2 194 aa6.96□□□□□ -1.29
RIF1-203ENST00000428287 ANP32AP39687 249 aaKnown RBP6.96□□□□□ -1.3
RIF1-203ENST00000428287 ZBTB47Q9UFB7 747 aaPredicted RBP6.96□□□□□ -1.3
RIF1-203ENST00000428287 BACH2Q9BYV9 841 aa6.95□□□□□ -1.3
RIF1-203ENST00000428287 EIF4G2P78344 907 aaKnown RBP eCLIP6.95□□□□□ -1.3
RIF1-203ENST00000428287 INSRP06213 1382 aa6.94□□□□□ -1.3
RIF1-203ENST00000428287 DHX29Q7Z478 1369 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms