RNA–Protein interactions for RNA: ENST00000426763.3

RPL28-202, Transcript of ribosomal protein L28, humanhuman

TSL 1 (best)

Gene RPL28, Length 5,620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-202ENST00000426763 ATAD2BQ9ULI0 1458 aa19.05■□□□□ 0.64
RPL28-202ENST00000426763 FHAD1B1AJZ9 1412 aa19.04■□□□□ 0.64
RPL28-202ENST00000426763 KDM2AQ9Y2K7 1162 aa19.02■□□□□ 0.64
RPL28-202ENST00000426763 ZBTB47Q9UFB7 747 aaPredicted RBP19.01■□□□□ 0.63
RPL28-202ENST00000426763 CANXP27824 592 aaKnown RBP19■□□□□ 0.63
RPL28-202ENST00000426763 SMARCA4P51532 1647 aa19■□□□□ 0.63
RPL28-202ENST00000426763 ABCC8Q09428 1581 aa19■□□□□ 0.63
RPL28-202ENST00000426763 TDRD9Q8NDG6 1382 aaKnown RBP18.96■□□□□ 0.63
RPL28-202ENST00000426763 ARID4BQ4LE39 1312 aaPredicted RBP18.96■□□□□ 0.63
RPL28-202ENST00000426763 CARMIL2Q6F5E8 1435 aa18.93■□□□□ 0.62
RPL28-202ENST00000426763 CCNB3Q8WWL7 1395 aa18.93■□□□□ 0.62
RPL28-202ENST00000426763 PPP1R15AO75807 674 aaPredicted RBP18.93■□□□□ 0.62
RPL28-202ENST00000426763 DDX10Q13206 875 aaKnown RBP18.89■□□□□ 0.61
RPL28-202ENST00000426763 EIF4G2P78344 907 aaKnown RBP eCLIP18.82■□□□□ 0.6
RPL28-202ENST00000426763 RGL3Q3MIN7 710 aa18.82■□□□□ 0.6
RPL28-202ENST00000426763 FANCD2Q9BXW9 1451 aa18.8■□□□□ 0.6
RPL28-202ENST00000426763 TRHP20396 242 aaPredicted RBP18.8■□□□□ 0.6
RPL28-202ENST00000426763 TMC1Q8TDI8 760 aa18.78■□□□□ 0.6
RPL28-202ENST00000426763 FMN1Q68DA7 1419 aa18.77■□□□□ 0.59
RPL28-202ENST00000426763 VPS8Q8N3P4 1428 aa18.76■□□□□ 0.59
RPL28-202ENST00000426763 FAM9BQ8IZU0 186 aa18.76■□□□□ 0.59
RPL28-202ENST00000426763 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
RPL28-202ENST00000426763 RAPGEF2Q9Y4G8 1499 aa18.75■□□□□ 0.59
RPL28-202ENST00000426763 GTF3C3Q9Y5Q9 886 aa18.74■□□□□ 0.59
RPL28-202ENST00000426763 C14orf37Q86TY3 774 aa18.74■□□□□ 0.59
RPL28-202ENST00000426763 WDR43Q15061 677 aaKnown RBP eCLIP18.73■□□□□ 0.59
RPL28-202ENST00000426763 BCL11AQ9H165 835 aa18.73■□□□□ 0.59
RPL28-202ENST00000426763 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
RPL28-202ENST00000426763 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
RPL28-202ENST00000426763 KANK1Q14678 1352 aa18.71■□□□□ 0.59
RPL28-202ENST00000426763 ARHGAP35Q9NRY4 1499 aa18.71■□□□□ 0.59
RPL28-202ENST00000426763 CDCA8Q53HL2 280 aa18.68■□□□□ 0.58
RPL28-202ENST00000426763 HIRIP3Q9BW71 556 aaPredicted RBP18.68■□□□□ 0.58
RPL28-202ENST00000426763 MRS2Q9HD23 443 aa18.67■□□□□ 0.58
RPL28-202ENST00000426763 NCAPD3P42695 1498 aa18.66■□□□□ 0.58
RPL28-202ENST00000426763 CARD11Q9BXL7 1154 aa18.64■□□□□ 0.58
RPL28-202ENST00000426763 SALL2Q9Y467 1007 aaPredicted RBP18.64■□□□□ 0.58
RPL28-202ENST00000426763 RTL5Q5HYW3 569 aaPredicted RBP18.64■□□□□ 0.57
RPL28-202ENST00000426763 EFCAB2Q5VUJ9 269 aa18.64■□□□□ 0.57
RPL28-202ENST00000426763 JPH4Q96JJ6 628 aa18.63■□□□□ 0.57
RPL28-202ENST00000426763 MLECQ14165 292 aa18.6■□□□□ 0.57
RPL28-202ENST00000426763 KANK4Q5T7N3 995 aaPredicted RBP18.59■□□□□ 0.57
RPL28-202ENST00000426763 ZBTB7CA1YPR0 619 aa18.58■□□□□ 0.56
RPL28-202ENST00000426763 FHOD3Q2V2M9 1422 aa18.58■□□□□ 0.56
RPL28-202ENST00000426763 POGKQ9P215 609 aa18.57■□□□□ 0.56
RPL28-202ENST00000426763 HDGFP51858 240 aaKnown RBP18.57■□□□□ 0.56
RPL28-202ENST00000426763 SIN3AQ96ST3 1273 aa18.56■□□□□ 0.56
RPL28-202ENST00000426763 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.55■□□□□ 0.56
RPL28-202ENST00000426763 GGT6Q6P531 493 aa18.55■□□□□ 0.56
RPL28-202ENST00000426763 KNSTRNQ9Y448 316 aa18.54■□□□□ 0.56
RPL28-202ENST00000426763 SETD5Q9C0A6 1442 aa18.54■□□□□ 0.56
RPL28-202ENST00000426763 PLEKHG5O94827 1062 aa18.54■□□□□ 0.56
RPL28-202ENST00000426763 FGD5Q6ZNL6 1462 aa18.53■□□□□ 0.56
RPL28-202ENST00000426763 MYT1Q01538 1121 aa18.52■□□□□ 0.56
RPL28-202ENST00000426763 CFAP53Q96M91 514 aa18.52■□□□□ 0.56
RPL28-202ENST00000426763 HAP1P54257 671 aaPredicted RBP18.51■□□□□ 0.55
RPL28-202ENST00000426763 CCDC18Q5T9S5 1454 aa18.51■□□□□ 0.55
RPL28-202ENST00000426763 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
RPL28-202ENST00000426763 ANKRD30AQ9BXX3 1397 aa18.5■□□□□ 0.55
RPL28-202ENST00000426763 DCAF11Q8TEB1 546 aa18.49■□□□□ 0.55
RPL28-202ENST00000426763 FKBP8Q14318 412 aa18.48■□□□□ 0.55
RPL28-202ENST00000426763 OSCARQ8IYS5 282 aa18.48■□□□□ 0.55
RPL28-202ENST00000426763 TIMELESSQ9UNS1 1208 aa18.47■□□□□ 0.55
RPL28-202ENST00000426763 A0A0G2JS52 829 aa18.46■□□□□ 0.55
RPL28-202ENST00000426763 RSPH4AQ5TD94 716 aa18.46■□□□□ 0.55
RPL28-202ENST00000426763 PKD2Q13563 968 aa18.46■□□□□ 0.55
RPL28-202ENST00000426763 PTPRGP23470 1445 aa18.46■□□□□ 0.55
RPL28-202ENST00000426763 MIER1Q8N108 512 aa18.45■□□□□ 0.54
RPL28-202ENST00000426763 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
RPL28-202ENST00000426763 RUSC2Q8N2Y8 1516 aa18.44■□□□□ 0.54
RPL28-202ENST00000426763 NPM2Q86SE8 214 aaKnown RBP18.43■□□□□ 0.54
RPL28-202ENST00000426763 HNRNPMP52272 730 aaKnown RBP eCLIP18.41■□□□□ 0.545e-6■■■■□ 20.3
RPL28-202ENST00000426763 NUP155O75694 1391 aa18.41■□□□□ 0.54
RPL28-202ENST00000426763 SPAG9O60271 1321 aaKnown RBP18.41■□□□□ 0.54
RPL28-202ENST00000426763 PPM1GO15355 546 aaPredicted RBP18.41■□□□□ 0.54
RPL28-202ENST00000426763 TMF1P82094 1093 aa18.4■□□□□ 0.54
RPL28-202ENST00000426763 IGF1RP08069 1367 aa18.4■□□□□ 0.54
RPL28-202ENST00000426763 ANP32AP39687 249 aaKnown RBP18.39■□□□□ 0.53
RPL28-202ENST00000426763 CC2D2AQ9P2K1 1620 aa18.39■□□□□ 0.53
RPL28-202ENST00000426763 KIF3BO15066 747 aa18.38■□□□□ 0.53
RPL28-202ENST00000426763 LMOD2Q6P5Q4 547 aa18.38■□□□□ 0.53
RPL28-202ENST00000426763 MPHOSPH9Q99550 1183 aa18.36■□□□□ 0.53
RPL28-202ENST00000426763 NUDCQ9Y266 331 aa18.36■□□□□ 0.53
RPL28-202ENST00000426763 CYB5RLQ6IPT4 315 aa18.36■□□□□ 0.53
RPL28-202ENST00000426763 CCDC136Q96JN2 1154 aa18.35■□□□□ 0.53
RPL28-202ENST00000426763 CFTRP13569 1480 aa18.35■□□□□ 0.53
RPL28-202ENST00000426763 UPF2Q9HAU5 1272 aaKnown RBP18.35■□□□□ 0.53
RPL28-202ENST00000426763 RAB3GAP2Q9H2M9 1393 aa18.34■□□□□ 0.53
RPL28-202ENST00000426763 HMGXB3Q12766 1538 aa18.33■□□□□ 0.53
RPL28-202ENST00000426763 AQRO60306 1485 aaKnown RBP eCLIP18.33■□□□□ 0.533e-8■■■■□ 26.2
RPL28-202ENST00000426763 FOXD1Q16676 465 aa18.33■□□□□ 0.52
RPL28-202ENST00000426763 MYH16Q9H6N6 1097 aa18.32■□□□□ 0.52
RPL28-202ENST00000426763 SRPK2P78362 688 aaKnown RBP18.32■□□□□ 0.52
RPL28-202ENST00000426763 MAPK8IP3Q9UPT6 1336 aa18.31■□□□□ 0.52
RPL28-202ENST00000426763 MRC2Q9UBG0 1479 aa18.3■□□□□ 0.52
RPL28-202ENST00000426763 WASHC2CQ9Y4E1 1318 aa18.29■□□□□ 0.52
RPL28-202ENST00000426763 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
RPL28-202ENST00000426763 NESP48681 1621 aa18.27■□□□□ 0.52
RPL28-202ENST00000426763 CC2D1BQ5T0F9 858 aaKnown RBP18.27■□□□□ 0.51
RPL28-202ENST00000426763 SAFB2Q14151 953 aaKnown RBP eCLIP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms