RNA–Protein interactions for RNA: ENST00000424270.6

SDCBP-203, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SDCBP, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-203ENST00000424270 DIP2BQ9P265 1576 aa11.86□□□□□ -0.51
SDCBP-203ENST00000424270 TSPOAP1O95153 1857 aa11.86□□□□□ -0.51
SDCBP-203ENST00000424270 PRG4Q92954 1404 aaPredicted RBP11.86□□□□□ -0.51
SDCBP-203ENST00000424270 CUX1P39880 1505 aa11.82□□□□□ -0.52
SDCBP-203ENST00000424270 MAPKBP1O60336 1514 aa11.81□□□□□ -0.52
SDCBP-203ENST00000424270 NUP160Q12769 1436 aa11.81□□□□□ -0.52
SDCBP-203ENST00000424270 SHROOM2Q13796 1616 aa11.8□□□□□ -0.52
SDCBP-203ENST00000424270 PLPPR3Q6T4P5 718 aa11.78□□□□□ -0.52
SDCBP-203ENST00000424270 JPH4Q96JJ6 628 aa11.78□□□□□ -0.52
SDCBP-203ENST00000424270 ABCA5Q8WWZ7 1642 aa11.78□□□□□ -0.52
SDCBP-203ENST00000424270 ADAMTS12P58397 1594 aa11.77□□□□□ -0.53
SDCBP-203ENST00000424270 TTBK1Q5TCY1 1321 aaPredicted RBP11.76□□□□□ -0.53
SDCBP-203ENST00000424270 ABCA10Q8WWZ4 1543 aa11.76□□□□□ -0.53
SDCBP-203ENST00000424270 FHAD1B1AJZ9 1412 aa11.74□□□□□ -0.53
SDCBP-203ENST00000424270 SOCS7O14512 581 aa11.73□□□□□ -0.53
SDCBP-203ENST00000424270 ADCY10Q96PN6 1610 aa11.72□□□□□ -0.53
SDCBP-203ENST00000424270 DISP3Q9P2K9 1392 aa11.72□□□□□ -0.53
SDCBP-203ENST00000424270 TOP2BQ02880 1626 aa11.68□□□□□ -0.54
SDCBP-203ENST00000424270 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
SDCBP-203ENST00000424270 ILDR2Q71H61 639 aa11.66□□□□□ -0.54
SDCBP-203ENST00000424270 TEX14Q8IWB6 1497 aa11.62□□□□□ -0.55
SDCBP-203ENST00000424270 ASXL2Q76L83 1435 aa11.61□□□□□ -0.55
SDCBP-203ENST00000424270 RUSC2Q8N2Y8 1516 aa11.61□□□□□ -0.55
SDCBP-203ENST00000424270 PLB1Q6P1J6 1458 aa11.61□□□□□ -0.55
SDCBP-203ENST00000424270 ERICH3Q5RHP9 1530 aa11.6□□□□□ -0.55
SDCBP-203ENST00000424270 PTPRGP23470 1445 aa11.6□□□□□ -0.55
SDCBP-203ENST00000424270 COL17A1Q9UMD9 1497 aaPredicted RBP11.59□□□□□ -0.55
SDCBP-203ENST00000424270 PPRC1Q5VV67 1664 aaKnown RBP11.58□□□□□ -0.56
SDCBP-203ENST00000424270 GLI2P10070 1586 aa11.57□□□□□ -0.56
SDCBP-203ENST00000424270 ABCC2Q92887 1545 aa11.56□□□□□ -0.56
SDCBP-203ENST00000424270 CERKQ8TCT0 537 aa11.53□□□□□ -0.56
SDCBP-203ENST00000424270 CUL7Q14999 1698 aa11.51□□□□□ -0.57
SDCBP-203ENST00000424270 CARMIL2Q6F5E8 1435 aa11.51□□□□□ -0.57
SDCBP-203ENST00000424270 EPRSP07814 1512 aaKnown RBP11.5□□□□□ -0.57
SDCBP-203ENST00000424270 KIAA0586Q9BVV6 1533 aa11.5□□□□□ -0.57
SDCBP-203ENST00000424270 KIF21BO75037 1637 aa11.49□□□□□ -0.57
SDCBP-203ENST00000424270 MAP3K4Q9Y6R4 1608 aa11.49□□□□□ -0.57
SDCBP-203ENST00000424270 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
SDCBP-203ENST00000424270 PTPRMP28827 1452 aa11.49□□□□□ -0.57
SDCBP-203ENST00000424270 SPATA31D1Q6ZQQ2 1576 aa11.49□□□□□ -0.57
SDCBP-203ENST00000424270 ARID4BQ4LE39 1312 aaPredicted RBP11.48□□□□□ -0.57
SDCBP-203ENST00000424270 PCF11O94913 1555 aaKnown RBP11.47□□□□□ -0.57
SDCBP-203ENST00000424270 HSPA2P54652 639 aa11.46□□□□□ -0.57
SDCBP-203ENST00000424270 UACAQ9BZF9 1416 aa11.45□□□□□ -0.58
SDCBP-203ENST00000424270 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
SDCBP-203ENST00000424270 BIVM-ERCC5R4GMW8 1640 aa11.44□□□□□ -0.58
SDCBP-203ENST00000424270 CD109Q6YHK3 1445 aa11.43□□□□□ -0.58
SDCBP-203ENST00000424270 UHRF1BP1LA0JNW5 1464 aa11.42□□□□□ -0.58
SDCBP-203ENST00000424270 MSH5O43196 834 aa11.4□□□□□ -0.58
SDCBP-203ENST00000424270 WDR7Q9Y4E6 1490 aa11.39□□□□□ -0.59
SDCBP-203ENST00000424270 ZCCHC11Q5TAX3 1644 aaKnown RBP11.38□□□□□ -0.59
SDCBP-203ENST00000424270 PIAS4Q8N2W9 510 aaPredicted RBP11.38□□□□□ -0.59
SDCBP-203ENST00000424270 KDM5BQ9UGL1 1544 aa11.38□□□□□ -0.59
SDCBP-203ENST00000424270 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
SDCBP-203ENST00000424270 MAGI3Q5TCQ9 1506 aa11.35□□□□□ -0.59
SDCBP-203ENST00000424270 MADDQ8WXG6 1647 aa11.35□□□□□ -0.59
SDCBP-203ENST00000424270 PPP6R1Q9UPN7 881 aa11.34□□□□□ -0.59
SDCBP-203ENST00000424270 ADRA2BP18089 450 aa11.33□□□□□ -0.6
SDCBP-203ENST00000424270 CFAP43Q8NDM7 1665 aa11.33□□□□□ -0.6
SDCBP-203ENST00000424270 IQGAP2Q13576 1575 aa11.33□□□□□ -0.6
SDCBP-203ENST00000424270 IGF1RP08069 1367 aa11.31□□□□□ -0.6
SDCBP-203ENST00000424270 RIMS1Q86UR5 1692 aaKnown RBP11.31□□□□□ -0.6
SDCBP-203ENST00000424270 KIF27Q86VH2 1401 aa11.31□□□□□ -0.6
SDCBP-203ENST00000424270 RAPGEF3O95398 923 aa11.3□□□□□ -0.6
SDCBP-203ENST00000424270 BCORL1Q5H9F3 1711 aa11.29□□□□□ -0.6
SDCBP-203ENST00000424270 DMRT2Q9Y5R5 561 aa11.29□□□□□ -0.6
SDCBP-203ENST00000424270 ARAP3Q8WWN8 1544 aa11.28□□□□□ -0.6
SDCBP-203ENST00000424270 CARMIL1Q5VZK9 1371 aa11.28□□□□□ -0.6
SDCBP-203ENST00000424270 DISP1Q96F81 1524 aa11.27□□□□□ -0.61
SDCBP-203ENST00000424270 ARID3CA6NKF2 412 aa11.27□□□□□ -0.61
SDCBP-203ENST00000424270 SUPT5HO00267 1087 aaKnown RBP11.27□□□□□ -0.61
SDCBP-203ENST00000424270 MLECQ14165 292 aa11.26□□□□□ -0.61
SDCBP-203ENST00000424270 POGZQ7Z3K3 1410 aa11.26□□□□□ -0.61
SDCBP-203ENST00000424270 FAM9AQ8IZU1 332 aaPredicted RBP11.25□□□□□ -0.61
SDCBP-203ENST00000424270 PHLDB1Q86UU1 1377 aa11.23□□□□□ -0.61
SDCBP-203ENST00000424270 KIAA0556O60303 1618 aa11.21□□□□□ -0.61
SDCBP-203ENST00000424270 YEATS2Q9ULM3 1422 aa11.21□□□□□ -0.61
SDCBP-203ENST00000424270 FANCAO15360 1455 aa11.19□□□□□ -0.62
SDCBP-203ENST00000424270 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.19□□□□□ -0.62
SDCBP-203ENST00000424270 HNRNPUL2Q1KMD3 747 aaKnown RBP11.19□□□□□ -0.62
SDCBP-203ENST00000424270 UGGT2Q9NYU1 1516 aa11.18□□□□□ -0.62
SDCBP-203ENST00000424270 SCAF1Q9H7N4 1312 aaKnown RBP11.17□□□□□ -0.62
SDCBP-203ENST00000424270 UBAP1LF5GYI3 381 aa11.17□□□□□ -0.62
SDCBP-203ENST00000424270 AKNAQ7Z591 1439 aa11.17□□□□□ -0.62
SDCBP-203ENST00000424270 ARHGEF40Q8TER5 1519 aa11.16□□□□□ -0.62
SDCBP-203ENST00000424270 NEO1Q92859 1461 aa11.16□□□□□ -0.62
SDCBP-203ENST00000424270 CEBPAP49715 358 aaPredicted RBP11.14□□□□□ -0.63
SDCBP-203ENST00000424270 UHRF1BP1Q6BDS2 1440 aa11.14□□□□□ -0.63
SDCBP-203ENST00000424270 PREX1Q8TCU6 1659 aa11.14□□□□□ -0.63
SDCBP-203ENST00000424270 FER1L4A9Z1Z3 1794 aa11.13□□□□□ -0.63
SDCBP-203ENST00000424270 DENND4BO75064 1496 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-203ENST00000424270 GOLGA3Q08378 1498 aa11.12□□□□□ -0.63
SDCBP-203ENST00000424270 FRMPD1Q5SYB0 1578 aa11.12□□□□□ -0.63
SDCBP-203ENST00000424270 ABCA8O94911 1581 aa11.11□□□□□ -0.63
SDCBP-203ENST00000424270 ABCA9Q8IUA7 1624 aa11.1□□□□□ -0.63
SDCBP-203ENST00000424270 RAPGEF2Q9Y4G8 1499 aa11.1□□□□□ -0.63
SDCBP-203ENST00000424270 PTPRTO14522 1441 aa11.09□□□□□ -0.63
SDCBP-203ENST00000424270 ZFYVE16Q7Z3T8 1539 aa11.09□□□□□ -0.63
SDCBP-203ENST00000424270 TTC37Q6PGP7 1564 aa11.09□□□□□ -0.63
SDCBP-203ENST00000424270 IQSEC2Q5JU85 1478 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms